CmoCh06G015890 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SsrA-binding
Location	Cmo_Chr06 : 11142705 .. 11143340 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGGTTTTCTTTTGAATTTTCAACGACGGAGCAAAAAACAAAGAAAACGGTCTTATTTTAAGTTTCTTTTGTAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAATCATCGTCGTGGTGGTCGCCGTTGTCTCGGCCGTGGCCAAAAGATTGTAGATAACTCTTTTTCTCTATTTCTCAATCAGTTATGATTTCGTTTTGTTTATAGGGAAGGAATGAATCCCCATGATTTGAAGAAGCTCTTAATCATGGTGAGACTTATTACTCTTAGTTAATGTAAAAATGAAATCTCTTTCCTCGTGGGAAATGGAACCTCATCTTTCTCGGTATTTTGATTTAGAGAGATAATTTTTTAAATTAGATACCAATTTTGTTACCAATAATTTCAAATAGAA

mRNA sequence

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAATCATCGTCGTGGTGGTCGCCGTTGTCTCGGCCGTGGCCAAAAGATTGTAGATAACTCTTTTTCTCTATTTCTCAATCAGTTATGATTTCGTTTTGTTTATAGGGAAGGAATGAATCCCCATGATTTGAAGAAGCTCTTAATCATGGTGAGACTTATTACTCTTAGTTAATGTAAAAATGAAATCTCTTTCCTCGTGGGAAATGGAACCTCATCTTTCTCGGTATTTTGATTTAGAGAGATAATTTTTTAAATTAGATACCAATTTTGTTACCAATAATTTCAAATAGAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAA

Homology

[Close]

BLAST of CmoCh06G015890 vs. TrEMBL
Match: A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-23
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDS-KKSHSDSDSGELSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI SP RKACTIFNQ+PRD  KKSHSDS      EQEKRVDVR+LQGEVMACGY
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDS------EQEKRVDVRNLQGEVMACGY 60

Query: 61 EDVQVMWSILD-KTNSTTTAAAATTSTVYNVSS 92
          EDV VMWSILD K NS  T A AT     NVSS
Sbjct: 61 EDVHVMWSILDHKANSAATTATATC----NVSS 83

[Close]

BLAST of CmoCh06G015890 vs. TrEMBL
Match: A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-18
Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
           MASWKKTITSP RKACT FNQ P   KKSH         E EKRV++ +LQGEVMAC YE
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--------EHEKRVNMMNLQGEVMACAYE 101

Query: 61  DVQVMWSILDKTNSTT 77
           DVQVMWSILDK+ + T
Sbjct: 102 DVQVMWSILDKSKAIT 109

[Close]

BLAST of CmoCh06G015890 vs. TrEMBL
Match: A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-17
Identity = 51/75 (68.00%), Postives = 54/75 (72.00%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI SP +KACT FNQ PRD K   S  + G     E RV V DL GEVMACGYE
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRDKK---SQPEPGN----ENRVMVMDLHGEVMACGYE 60

Query: 61 DVQVMWSILDKTNST 76
          DVQVMWSILDK+ ST
Sbjct: 61 DVQVMWSILDKSKST 68

[Close]

BLAST of CmoCh06G015890 vs. TrEMBL
Match: V7CC75_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G124400g PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.6e-17
Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFN-QHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTIT+P +KACT FN Q PRD KKS          EQE+RV   DLQGEVMACGY
Sbjct: 1  MASWKKTITTPFKKACTFFNNQPPRDQKKSQP--------EQERRV--MDLQGEVMACGY 60

Query: 61 EDVQVMWSILDKTNST 76
          EDVQVMWSILDK+ ST
Sbjct: 61 EDVQVMWSILDKSKST 66

[Close]

BLAST of CmoCh06G015890 vs. TrEMBL
Match: A0A0B2QDD6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_005984 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQH--PRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACG 60
          MASWKKTIT+P +KACT+F Q   PRD KKS +        EQE++V   DLQGEVMACG
Sbjct: 1  MASWKKTITTPFKKACTVFKQQQPPRDQKKSQT--------EQERQV--MDLQGEVMACG 60

Query: 61 YEDVQVMWSILDKTNSTTTAAAATT 84
          YEDVQVMWSILDK+ ST     ++T
Sbjct: 61 YEDVQVMWSILDKSKSTNCNITSST 75

[Close]

BLAST of CmoCh06G015890 vs. TAIR10
Match: AT3G17580.1 (AT3G17580.1 unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-16
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKS-HSDSDSGELSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI +P +KA T FNQ  +  KK      D+    E EKR+ V++LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVQVMWSILDKTNSTTTAAA 81
          +DV VMWSILDK+NS+   ++
Sbjct: 61 DDVLVMWSILDKSNSSNNLSS 80

[Close]

BLAST of CmoCh06G015890 vs. TAIR10
Match: AT1G48330.1 (AT1G48330.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-16
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI +P +KA T FNQ  + ++  H+++ + E  E EKR  V++LQG+VMACGYE
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNR--HANAKARE--EHEKRT-VQELQGDVMACGYE 60

Query: 61 DVQVMWSILDKTNSTTTAAA 81
          DV VMWSILDK+NS+   ++
Sbjct: 61 DVLVMWSILDKSNSSNNLSS 75

[Close]

BLAST of CmoCh06G015890 vs. NCBI nr
Match: gi|659077054|ref|XP_008439007.1| (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 3.3e-24
Identity = 69/92 (75.00%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI SP RKACTIFNQ+PRD KKSHSDS      EQEKRVDVR+LQGEVMACGYE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS------EQEKRVDVRNLQGEVMACGYE 60

Query: 61 DVQVMWSILD-KTNSTTTAAAATTSTVYNVSS 92
          DV VMWSILD K NS  T A AT     NVSS
Sbjct: 61 DVHVMWSILDHKANSAATTATATC----NVSS 82

[Close]

BLAST of CmoCh06G015890 vs. NCBI nr
Match: gi|449459806|ref|XP_004147637.1| (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 8.1e-23
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDS-KKSHSDSDSGELSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI SP RKACTIFNQ+PRD  KKSHSDS      EQEKRVDVR+LQGEVMACGY
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDS------EQEKRVDVRNLQGEVMACGY 60

Query: 61 EDVQVMWSILD-KTNSTTTAAAATTSTVYNVSS 92
          EDV VMWSILD K NS  T A AT     NVSS
Sbjct: 61 EDVHVMWSILDHKANSAATTATATC----NVSS 83

[Close]

BLAST of CmoCh06G015890 vs. NCBI nr
Match: gi|629095418|gb|KCW61413.1| (hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis])

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18
Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
           MASWKKTITSP RKACT FNQ P   KKSH         E EKRV++ +LQGEVMAC YE
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--------EHEKRVNMMNLQGEVMACAYE 101

Query: 61  DVQVMWSILDKTNSTT 77
           DVQVMWSILDK+ + T
Sbjct: 102 DVQVMWSILDKSKAIT 109

[Close]

BLAST of CmoCh06G015890 vs. NCBI nr
Match: gi|702447391|ref|XP_010024889.1| (PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis])

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18
Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTITSP RKACT FNQ P   KKSH         E EKRV++ +LQGEVMAC YE
Sbjct: 1  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--------EHEKRVNMMNLQGEVMACAYE 60

Query: 61 DVQVMWSILDKTNSTT 77
          DVQVMWSILDK+ + T
Sbjct: 61 DVQVMWSILDKSKAIT 68

[Close]

BLAST of CmoCh06G015890 vs. NCBI nr
Match: gi|802706977|ref|XP_012084229.1| (PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-17
Identity = 51/75 (68.00%), Postives = 54/75 (72.00%), Query Frame = 1


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI SP +KACT FNQ PRD K   S  + G     E RV V DL GEVMACGYE
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRDKK---SQPEPGN----ENRVMVMDLHGEVMACGYE 60

Query: 61 DVQVMWSILDKTNST 76
          DVQVMWSILDK+ ST
Sbjct: 61 DVQVMWSILDKSKST 68

The following BLAST results are available for this feature:

BLAST of CmoCh06G015890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G015890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5H1_CUCSA	5.6e-23	74.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1	[more]
A0A059B5L7_EUCGR	2.4e-18	67.11	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 ...	[more]
A0A067K874_JATCU	3.5e-17	68.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1	[more]
V7CC75_PHAVU	4.6e-17	69.74	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G124400g PE=4 SV=1	[more]
A0A0B2QDD6_GLYSO	3.0e-16	61.18	Uncharacterized protein OS=Glycine soja GN=glysoja_005984 PE=4 SV=1	[more]

BLAST of CmoCh06G015890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17580.1	1.2e-16	55.56	unknown protein	[more]
AT1G48330.1	5.9e-16	55.00	unknown protein	[more]

BLAST of CmoCh06G015890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077054\|ref\|XP_008439007.1\|	3.3e-24	75.00	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
gi\|449459806\|ref\|XP_004147637.1\|	8.1e-23	74.19	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus]	[more]
gi\|629095418\|gb\|KCW61413.1\|	3.5e-18	67.11	hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis]	[more]
gi\|702447391\|ref\|XP_010024889.1\|	3.5e-18	67.11	PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis]	[more]
gi\|802706977\|ref\|XP_012084229.1\|	5.1e-17	68.00	PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015969	guanosine tetraphosphate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015890.1	CmoCh06G015890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 2..76 score: 3.6
None	No IPR available	PANTHER	PTHR33181:SF10	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MKP6	coord: 2..76 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015890	Cucsa.252090	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015890	CmaCh14G015510	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G015890	CmaCh06G015940	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015890	Cla021837	Watermelon (97103) v1	cmowmB793
CmoCh06G015890	Csa3G171230	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015890	MELO3C006761	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015890	ClCG05G006950	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015890	CSPI03G15450	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015890	Lsi05G013760	Bottle gourd (USVL1VR-Ls)	cmolsiB759
CmoCh06G015890	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015890	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015890	CsaV3_3G015620	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015890	Cla97C05G088600	Watermelon (97103) v2	cmowmbB833
CmoCh06G015890	Bhi01G000833	Wax gourd	cmowgoB1005
CmoCh06G015890	CsGy3G015520	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015890	Carg25663	Silver-seed gourd	carcmoB1007
CmoCh06G015890	Carg19589	Silver-seed gourd	carcmoB0390

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G015890	CmoCh14G015870	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G015890	Melon (DHL92) v3.6.1	cmomedB857