ClCG05G006950 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006950
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Genomic DNA, chromosome 3, P1 clone: MKP6
Location	CG_Chr05 : 7040424 .. 7041149 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTTTTATTAATTATTTTTCTCTCTATATATTGTGACCCATTTCACTTCCAACGCCTTTCAGCCAAACACATTCTCAAACCTCAACATTAGTTTCCTATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGGTTAGGTCTCGAGTTTTTTAAGCAGTTGAAAAGTCATTTCAAACAACAAACTTTTTAATTTCTGAATAGAGTTTGTTTGATTGTTTGTTAATAATTGTAATTTTAAAAGTTAATTGACAATTGTGTTCTGTTTGTTTTTCAGAGCAAGAGAAGCGAGTGGATGTGAGGAATCTTCAAGGGGAGGTGATGGCGTGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCAACAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAACCACGGACGACTGACGTCGCTGCTGCTGCCGCCGTCGTCACCGGTTGCTTAATTGTTGTTGTACATAAACCCAGCAATACCTCTCTTTCTCTGTGTTATTTTGGAGTTTGATGATTTTTGTTTATTTGTAGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTATTACTCTTAAATCTTAATTAATGCAAAAAAAAAAAAAAAAAAAAAA

mRNA sequence

CTCTCTCTCTCTTTTATTAATTATTTTTCTCTCTATATATTGTGACCCATTTCACTTCCAACGCCTTTCAGCCAAACACATTCTCAAACCTCAACATTAGTTTCCTATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGATGTGAGGAATCTTCAAGGGGAGGTGATGGCGTGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCAACAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAACCACGGACGACTGACGTCGCTGCTGCTGCCGCCGTCGTCACCGGTTGCTTAATTGTTGTTGTACATAAACCCAGCAATACCTCTCTTTCTCTGTGTTATTTTGGAGTTTGATGATTTTTGTTTATTTGTAGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTATTACTCTTAAATCTTAATTAATGCAAAAAAAAAAAAAAAAAAAAAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGATGTGAGGAATCTTCAAGGGGAGGTGATGGCGTGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCAACAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMWSILDKANSTATATAATCNVSS

Homology

[Close]

BLAST of ClCG05G006950 vs. TrEMBL
Match: A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTATATAATCNVSS 82
          WSILD KANS AT   ATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of ClCG05G006950 vs. TrEMBL
Match: A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTI SPFRKACT FNQ+P   KKSH   E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVMW 101

Query: 61  SILDKANS 69
           SILDK+ +
Sbjct: 102 SILDKSKA 107

[Close]

BLAST of ClCG05G006950 vs. TrEMBL
Match: A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPF+KACT FNQ PRD KKS  +   E RV V +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD-KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDK+ ST       CN++S
Sbjct: 61 SILDKSKST------NCNLTS 74

[Close]

BLAST of ClCG05G006950 vs. TrEMBL
Match: G7JR35_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g124250 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-18
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNP--RDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KACT F + P  RDPKKS +  EQE+R+   +LQGEVMACGYEDV V
Sbjct: 1  MASWKKTITTPFKKACTFFKEQPTTRDPKKSQT--EQERRI--MDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKANSTATATAATCNVSS 82
          MWS+LD++ STAT     CN++S
Sbjct: 61 MWSMLDRSKSTAT----ECNITS 75

[Close]

BLAST of ClCG05G006950 vs. TrEMBL
Match: V7B116_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G221600g PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-18
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNP-RDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI +PF+KACT FNQ P RDPKKS +  EQE R+   +L GEVMACGYEDV VM
Sbjct: 1  MASWKKTIATPFKKACTFFNQQPPRDPKKSQT--EQENRI--MDLHGEVMACGYEDVQVM 60

Query: 61 WSILDKANSTATATAATCNVSS 82
          WSILDK+ S+A      CN++S
Sbjct: 61 WSILDKSKSSA------CNITS 72

[Close]

BLAST of ClCG05G006950 vs. TAIR10
Match: AT3G17580.1 (AT3G17580.1 unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-18
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKK-------SHSDSEQEKRVDVRNLQGEVMACGY 60
          MASWKKTI +PF+KA T FNQ  + PKK       + +  E EKR+ V+ LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVHVMWSILDKANST 70
          +DV VMWSILDK+NS+
Sbjct: 61 DDVLVMWSILDKSNSS 75

[Close]

BLAST of ClCG05G006950 vs. TAIR10
Match: AT1G48330.1 (AT1G48330.1 unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-17
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KA T FNQ  +  + +++ +  E EKR  V+ LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKANST 70
          MWSILDK+NS+
Sbjct: 61 MWSILDKSNSS 70

[Close]

BLAST of ClCG05G006950 vs. NCBI nr
Match: gi|659077054|ref|XP_008439007.1| (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 7.4e-36
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSTATATAATCNVSS 82
          SILD KANS AT   ATCNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of ClCG05G006950 vs. NCBI nr
Match: gi|449459806|ref|XP_004147637.1| (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTATATAATCNVSS 82
          WSILD KANS AT   ATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of ClCG05G006950 vs. NCBI nr
Match: gi|629095418|gb|KCW61413.1| (hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTI SPFRKACT FNQ+P   KKSH   E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVMW 101

Query: 61  SILDKANS 69
           SILDK+ +
Sbjct: 102 SILDKSKA 107

[Close]

BLAST of ClCG05G006950 vs. NCBI nr
Match: gi|702447391|ref|XP_010024889.1| (PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPFRKACT FNQ+P   KKSH   E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 1  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVMW 60

Query: 61 SILDKANS 69
          SILDK+ +
Sbjct: 61 SILDKSKA 66

[Close]

BLAST of ClCG05G006950 vs. NCBI nr
Match: gi|802706977|ref|XP_012084229.1| (PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas])

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPF+KACT FNQ PRD KKS  +   E RV V +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD-KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDK+ ST       CN++S
Sbjct: 61 SILDKSKST------NCNLTS 74

The following BLAST results are available for this feature:

BLAST of ClCG05G006950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5H1_CUCSA	1.3e-34	92.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1	[more]
A0A059B5L7_EUCGR	1.2e-19	73.53	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 ...	[more]
A0A067K874_JATCU	1.5e-19	65.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1	[more]
G7JR35_MEDTR	1.3e-18	62.65	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g124250 PE=4 SV=1	[more]
V7B116_PHAVU	1.7e-18	64.63	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G221600g PE=4 SV=1	[more]

BLAST of ClCG05G006950 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17580.1	1.5e-18	60.53	unknown protein	[more]
AT1G48330.1	3.7e-17	60.56	unknown protein	[more]

BLAST of ClCG05G006950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077054\|ref\|XP_008439007.1\|	7.4e-36	93.90	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
gi\|449459806\|ref\|XP_004147637.1\|	1.8e-34	92.77	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus]	[more]
gi\|629095418\|gb\|KCW61413.1\|	1.7e-19	73.53	hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis]	[more]
gi\|702447391\|ref\|XP_010024889.1\|	1.7e-19	73.53	PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis]	[more]
gi\|802706977\|ref\|XP_012084229.1\|	2.2e-19	65.43	PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G006950.1	ClCG05G006950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 2..70 score: 3.1
None	No IPR available	PANTHER	PTHR33181:SF10	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MKP6	coord: 2..70 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G006950	Csa3G171230	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G006950	MELO3C006761	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G006950	Cla021837	Watermelon (97103) v1	wcgwmB286
ClCG05G006950	Cla97C05G088600	Watermelon (97103) v2	wcgwmbB229
ClCG05G006950	Bhi01G000833	Wax gourd	wcgwgoB426
ClCG05G006950	CSPI03G15450	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G006950	Cucsa.252090	Cucumber (Gy14) v1	cgywcgB451
ClCG05G006950	CmaCh14G015510	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G006950	CmaCh06G015940	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G006950	CmoCh14G015870	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G006950	CmoCh06G015890	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G006950	Lsi05G013760	Bottle gourd (USVL1VR-Ls)	lsiwcgB336
ClCG05G006950	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G006950	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G006950	CsGy3G015520	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G006950	Carg25663	Silver-seed gourd	carwcgB0718
ClCG05G006950	CsaV3_3G015620	Cucumber (Chinese Long) v3	cucwcgB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G006950	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G006950	Silver-seed gourd	carwcgB0271