CsaV3_3G015620 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G015620
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	SsrA-binding protein
Location	chr3 : 11628022 .. 11629641 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCTATAGCTTCCCCACGAACAAAAAGGGTTTCTTCTGTCAATTTTCACCATGTATATTAACATATGTTCTATAACTTTTGTAAGAATATGATGATGAAAAAATATACGAATTATTGGAAGGTGAAAAGGTTTAAATTATTTAATTAATATGAAAGAATGCGTTGTTTTATCGAAGTATTTGTGGAGACGGACGTAAATTGATTCATACACAACGATGATGATAATAATAATAATGATTTGAAGATAAGAAATAAAAAGTTTGTGTTGCTCATCCTTCGGATCTTGCCTACTCATCTTCTTCTCTTTCTCTCTCTTTTTCTTATCTATTGTTTATTAATAATTCTTTGTGTTCTATATATTGTGACCCATTTCACTTCCAACCCCTTTCAGCCAAACACATTCTCAAACCTCACCAAATTATTATCATTACTATTATTTGTTACTGCTACAACTACAACAACTCTAATGGCTTCTTGGAAGAAAACAATCATTTCTCCCTTCAGAAAAGCTTGCACCATCTTCAACCAAAACCCTCGAGATCATCCTAAAAAGTCTCATTCCGACTCAGGTAATTTTACGACCCCCCATGCATCCACTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAACAACACACGAGACCTTACTTTTCTTTTTTAAATCATCATCTCTTACATTTTTACAATTGTTTAATTCTCTGTTTCTTTAGTATATAATATATATGTGTGTGTGTGTGTGTGTGTGTATATATATCCAGCGTCTGAACATACATAGCTTCTTCTTTTTGTTTGTTTTTTAGAGCAAGAGAAGAGAGTGGATGTGAGGAATCTCCAAGGAGAGGTTATGGCATGTGGGTATGAAGACGTGCATGTGATGTGGTCTATTTTAGATCACAAGGCCAACTCCGCTGCCACCACCGCTACCGCTACTTGCAATGTCTCTTCTTAACAACCACCACCACCACGACCAATGTCTCAGACTATGACTACTGCTTAATTAAATTTGTTGTAGATAAAGCTTGCTGCTGCTGCTCAATACATGATGATCGATCTCTATGGTATTTTGTGATCAGTTGATGATGATGATGATTTTGTTTATTTAATTATGTGTAGGGAATGAATATATTATCAAATGAATCCCCATGATTTGAAGCTCTTAATCATGGTGAGATTTAAGGTTTAAAAAAACTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTATTTTCTAGGAAATGGAACCTTATCTCTTGAGGAAAGTGGTTCATCAGATCTGATTGGTTGGTCAGATTTTAGTTATAATTTATGTAAACCACTTCCCAATGTCTTCATTTTCAGAAAGAATTCAAGAGAGAAAGAGAAAGAGATAGAGAGTCTTCAATTTTTCAATTTTCTCTTTTGTAAATTACAAATAATATTAACTTTTAGTCATTCATCTTTTTATTTTTGTTTTTAGTTAGTTAAGGATATCAATCTTGACATGACATGCAGTATTGTTAATCATTTGCTTTATTATAATAGTAGAATCCGATGTACTCAAAATCACTTATTATGATGAAGACTTTGATTGATACAATTAATGGTGACAATCTCTTTAACCTCTTTTTAAACTTT

mRNA sequence

ATGGCTTCTTGGAAGAAAACAATCATTTCTCCCTTCAGAAAAGCTTGCACCATCTTCAACCAAAACCCTCGAGATCATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGAGAGTGGATGTGAGGAATCTCCAAGGAGAGGTTATGGCATGTGGGTATGAAGACGTGCATGTGATGTGGTCTATTTTAGATCACAAGGCCAACTCCGCTGCCACCACCGCTACCGCTACTTGCAATGTCTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACAATCATTTCTCCCTTCAGAAAAGCTTGCACCATCTTCAACCAAAACCCTCGAGATCATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGAGAGTGGATGTGAGGAATCTCCAAGGAGAGGTTATGGCATGTGGGTATGAAGACGTGCATGTGATGTGGTCTATTTTAGATCACAAGGCCAACTCCGCTGCCACCACCGCTACCGCTACTTGCAATGTCTCTTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMWSILDHKANSAATTATATCNVSS

Homology

[Close]

BLAST of CsaV3_3G015620 vs. NCBI nr
Match: XP_004147637.1 (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical protein Csa_3G171230 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 2.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILDHKANSAATTATATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of CsaV3_3G015620 vs. NCBI nr
Match: XP_008439007.1 (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 5.5e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILDHKANSAATTATATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 82

[Close]

BLAST of CsaV3_3G015620 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 142.1 bits (357), Expect = 8.5e-31
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
           MASWKKTIISPFRKACTIFNQ PRD PKKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVM
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRD-PKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVM 117

Query: 61  WSILDHKANSAATTATATCNVSS 84
           WSILD KANS A  ATA CNVSS
Sbjct: 118 WSILD-KANSGA-AATAACNVSS 137

[Close]

BLAST of CsaV3_3G015620 vs. NCBI nr
Match: XP_022980000.1 (uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharacterized protein LOC111790878 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQ+PRD PKKS SDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRD-PKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILD KANS  T ATA CNVSS
Sbjct: 61 WSILD-KANSTTTAATA-CNVSS 80

[Close]

BLAST of CsaV3_3G015620 vs. NCBI nr
Match: XP_022935724.1 (uncharacterized protein LOC111442547 [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVH 60
          MASWKKTI SP RKACTIFNQ+PRD  KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV 
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRD-SKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQ 60

Query: 61 VMWSILDHKANS 71
          VMWSILD K NS
Sbjct: 61 VMWSILD-KTNS 70

[Close]

BLAST of CsaV3_3G015620 vs. TAIR10
Match: AT3G17580.1 (unknown protein)

HSP 1 Score: 83.2 bits (204), Expect = 8.5e-17
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKK-------SHSDSEQEKRVDVRNLQGEVMACG 60
          MASWKKTI +PF+KA T FNQ P+  PKK       + +  E EKR+ V+ LQGEVMACG
Sbjct: 1  MASWKKTIATPFKKAATFFNQ-PQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACG 60

Query: 61 YEDVHVMWSILDHKANSA 72
          Y+DV VMWSILD K+NS+
Sbjct: 61 YDDVLVMWSILD-KSNSS 75

[Close]

BLAST of CsaV3_3G015620 vs. TAIR10
Match: AT1G48330.1 (unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-16
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI +PF+KA T FNQ  + +   +    E+ ++  V+ LQG+VMACGYEDV VM
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRTVQELQGDVMACGYEDVLVM 60

Query: 61 WSILDHKANSA 72
          WSILD K+NS+
Sbjct: 61 WSILD-KSNSS 70

[Close]

BLAST of CsaV3_3G015620 vs. TrEMBL
Match: tr|A0A0A0L5H1|A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILDHKANSAATTATATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of CsaV3_3G015620 vs. TrEMBL
Match: tr|A0A1S3AXS6|A0A1S3AXS6_CUCME (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.6e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILDHKANSAATTATATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 82

[Close]

BLAST of CsaV3_3G015620 vs. TrEMBL
Match: tr|A0A059B5L7|A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
           MASWKKTI SPFRKACT FNQ+P    KKSH   E EKRV++ NLQGEVMAC YEDV VM
Sbjct: 42  MASWKKTITSPFRKACTFFNQSP-SRDKKSH--QEHEKRVNMMNLQGEVMACAYEDVQVM 101

Query: 61  WSILD 66
           WSILD
Sbjct: 102 WSILD 103

[Close]

BLAST of CsaV3_3G015620 vs. TrEMBL
Match: tr|A0A067K874|A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI SPF+KACT FNQ PRD  KKS  +   E RV V +L GEVMACGYEDV VM
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD--KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVM 60

Query: 61 WSILDHKANSAATTATATCNVSS 84
          WSILD        + +  CN++S
Sbjct: 61 WSILD-------KSKSTNCNLTS 74

[Close]

BLAST of CsaV3_3G015620 vs. TrEMBL
Match: tr|A0A1S2XGT5|A0A1S2XGT5_CICAR (uncharacterized protein LOC101488468 OS=Cicer arietinum OX=3827 GN=LOC101488468 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQN-PRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI SPF+KACT FNQ  PRDH KKS  + +Q + +D   L GEVMACGYEDVHV
Sbjct: 1  MASWKKTITSPFKKACTFFNQQPPRDH-KKSQIEQDQNRGMD---LHGEVMACGYEDVHV 60

Query: 61 MWSILDHKANSAATTATATCNVSS 84
          MWSILD   ++A       CN++S
Sbjct: 61 MWSILDKSKSTA-------CNITS 73

The following BLAST results are available for this feature:

BLAST of CsaV3_3G015620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147637.1	2.6e-40	100.00	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hy...	[more]
XP_008439007.1	5.5e-38	98.80	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
XP_022138108.1	8.5e-31	90.36	uncharacterized protein LOC111009357 [Momordica charantia]	[more]
XP_022980000.1	1.4e-30	90.36	uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharac...	[more]
XP_022935724.1	1.1e-22	84.72	uncharacterized protein LOC111442547 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G015620 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17580.1	8.5e-17	60.26	unknown protein	[more]
AT1G48330.1	7.2e-16	56.34	unknown protein	[more]

BLAST of CsaV3_3G015620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G015620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5H1\|A0A0A0L5H1_CUCSA	1.7e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1	[more]
tr\|A0A1S3AXS6\|A0A1S3AXS6_CUCME	3.6e-38	98.80	uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A059B5L7\|A0A059B5L7_EUCGR	1.6e-17	75.38	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04...	[more]
tr\|A0A067K874\|A0A067K874_JATCU	1.0e-16	60.24	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19104 PE=4 SV=1	[more]
tr\|A0A1S2XGT5\|A0A1S2XGT5_CICAR	1.0e-16	60.71	uncharacterized protein LOC101488468 OS=Cicer arietinum OX=3827 GN=LOC101488468 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G015620.1	CsaV3_3G015620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..39
None	No IPR available	PANTHER	PTHR33181:SF10	SUBFAMILY NOT NAMED	coord: 1..71
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 1..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G015620	CSPI03G15450	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G015620	Cucsa.252090	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G015620	CmaCh06G015940	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G015620	CmaCh14G015510	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G015620	CmoCh14G015870	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G015620	CmoCh06G015890	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G015620	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G015620	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	cpecucB1056
CsaV3_3G015620	CsGy3G015520	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G015620	Carg25663	Silver-seed gourd	carcucB0777
CsaV3_3G015620	Cla021837	Watermelon (97103) v1	cucwmB239
CsaV3_3G015620	MELO3C006761	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G015620	ClCG05G006950	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G015620	Lsi05G013760	Bottle gourd (USVL1VR-Ls)	cuclsiB229
CsaV3_3G015620	Cla97C05G088600	Watermelon (97103) v2	cucwmbB206
CsaV3_3G015620	Bhi01G000833	Wax gourd	cucwgoB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G015620	Bottle gourd (USVL1VR-Ls)	cuclsiB245
CsaV3_3G015620	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G015620	Silver-seed gourd	carcucB0309