CmaCh14G015510 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G015510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Genomic DNA, chromosome 3, P1 clone: MKP6
Location	Cma_Chr14 : 11690362 .. 11691358 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCATCCTTCGGATCTTGCCTTCTTTCTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCACACTTCGCTATAAATTGTGAGCCATTTCACTTCCAACGCCTTTCAGCCAAACACATTCTCACACCTTCATATTCCCATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAGCACCCTCGAGATCCCAAAAAGTCTCCCTCCGATTCAGGTTAGCTCTCGGGTTTTTTTTAACCACTTCAAAACTCATTTCAAACCCGCTTCATACTCTTTCTTCTCTCTCTAAATTCAAAGAAATTATCTATGATTATCAATTTAAACATAGCTCACCTGTTATGATTTGAATTTGTAGAGCAAGAGAAGCGAGTAGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTACGAAGACGTGCATGTGATGTGGTCTATTTTAGACAAGGCCAATTCAACTACGACCGCCGCTACTGCTTGCAATGTGTCTTCTTAACCGTCGTCGAGGCCGCCACCGACACCGACAGATGGTGGTGGTTGGTTAATTGGTGTAGATAAAGCATAATACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTCATGTTATTTTGTGAGTTATGATGATTTTGTTTGTGTAGGAAATGAATCCCCATGATTTGAAGGTTTTAATCATGGTGAGATTTAAGTTTTATAATTATTACTCTTTTTAAGTCCTAAAAATCTCTCCTTTTTTTCTTTTTTTTCTTATGGGGAATGGAACCTTATCTCTGATCAAATTGGCTCAGATCTGATTGGTTTGTCATTTTTAGTTATAATTTATGTGCACCACCTTCCAAGGCATCAAATTGAGAGACAATGAGAGAAGCTTGGACTTTTAGAATTTTTTTTTTTTTCCTTTTTTAAGATGAATTATTATTTTTTTGCTTCTAGTTTAATGATATCAAGGATGATTTGACC

mRNA sequence

GCTCATCCTTCGGATCTTGCCTTCTTTCTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCACACTTCGCTATAAATTGTGAGCCATTTCACTTCCAACGCCTTTCAGCCAAACACATTCTCACACCTTCATATTCCCATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAGCACCCTCGAGATCCCAAAAAGTCTCCCTCCGATTCAGAGCAAGAGAAGCGAGTAGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTACGAAGACGTGCATGTGATGTGGTCTATTTTAGACAAGGCCAATTCAACTACGACCGCCGCTACTGCTTGCAATGTGTCTTCTTAACCGTCGTCGAGGCCGCCACCGACACCGACAGATGGTGGTGGTTGGTTAATTGGTGTAGATAAAGCATAATACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTCATGTTATTTTGTGAGTTATGATGATTTTGTTTGTGTAGGAAATGAATCCCCATGATTTGAAGGTTTTAATCATGGTGAGATTTAAGTTTTATAATTATTACTCTTTTTAAGTCCTAAAAATCTCTCCTTTTTTTCTTTTTTTTCTTATGGGGAATGGAACCTTATCTCTGATCAAATTGGCTCAGATCTGATTGGTTTGTCATTTTTAGTTATAATTTATGTGCACCACCTTCCAAGGCATCAAATTGAGAGACAATGAGAGAAGCTTGGACTTTTAGAATTTTTTTTTTTTTCCTTTTTTAAGATGAATTATTATTTTTTTGCTTCTAGTTTAATGATATCAAGGATGATTTGACC

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAGCACCCTCGAGATCCCAAAAAGTCTCCCTCCGATTCAGAGCAAGAGAAGCGAGTAGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTACGAAGACGTGCATGTGATGTGGTCTATTTTAGACAAGGCCAATTCAACTACGACCGCCGCTACTGCTTGCAATGTGTCTTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMWSILDKANSTTTAATACNVSS

Homology

[Close]

BLAST of CmaCh14G015510 vs. TrEMBL
Match: A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.4e-31
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHPRD-PKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQ+PRD PKKS SDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTTTAATA-CNVSS 81
          WSILD KANS  T ATA CNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of CmaCh14G015510 vs. TrEMBL
Match: A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-19
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPF+KACT FNQ PRD KKS  +   E RV V +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD-KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSTTTAATACNVSS 81
          SILDK+ ST      CN++S
Sbjct: 61 SILDKSKSTN-----CNLTS 74

[Close]

BLAST of CmaCh14G015510 vs. TrEMBL
Match: A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.4e-19
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTI SPFRKACT FNQ P   KK  S  E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKK--SHQEHEKRVNMMNLQGEVMACAYEDVQVMW 101

Query: 61  SILDKANSTT 71
           SILDK+ + T
Sbjct: 102 SILDKSKAIT 109

[Close]

BLAST of CmaCh14G015510 vs. TrEMBL
Match: A0A0L9T617_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan213s004100 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-18
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHP-RDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI +PF+KACT FNQ P RDPKKS   +EQE R+   +L GEVMACGYEDV VM
Sbjct: 1  MASWKKTIATPFKKACTFFNQQPPRDPKKS--QTEQENRI--MDLHGEVMACGYEDVQVM 60

Query: 61 WSILDKANSTTTAATACNVSS 81
          WSILDK+ S     +ACN++S
Sbjct: 61 WSILDKSKS-----SACNITS 72

[Close]

BLAST of CmaCh14G015510 vs. TrEMBL
Match: A0A0S3RH73_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G294300 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-18
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHP-RDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI +PF+KACT FNQ P RDPKKS   +EQE R+   +L GEVMACGYEDV VM
Sbjct: 1  MASWKKTIATPFKKACTFFNQQPPRDPKKS--QTEQENRI--MDLHGEVMACGYEDVQVM 60

Query: 61 WSILDKANSTTTAATACNVSS 81
          WSILDK+ S     +ACN++S
Sbjct: 61 WSILDKSKS-----SACNITS 72

[Close]

BLAST of CmaCh14G015510 vs. TAIR10
Match: AT3G17580.1 (AT3G17580.1 unknown protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-18
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHPRDPKK-------SPSDSEQEKRVDVRNLQGEVMACGY 60
          MASWKKTI +PF+KA T FNQ  + PKK       + +  E EKR+ V+ LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVHVMWSILDKANSTTTAAT 75
          +DV VMWSILDK+NS+   ++
Sbjct: 61 DDVLVMWSILDKSNSSNNLSS 80

[Close]

BLAST of CmaCh14G015510 vs. TAIR10
Match: AT1G48330.1 (AT1G48330.1 unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KA T FNQ  +  + + + +  E EKR  V+ LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKANSTTTAAT 75
          MWSILDK+NS+   ++
Sbjct: 61 MWSILDKSNSSNNLSS 75

[Close]

BLAST of CmaCh14G015510 vs. NCBI nr
Match: gi|659077054|ref|XP_008439007.1| (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 4.9e-32
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQ+PRDPKKS SDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSTTTAATA-CNVSS 81
          SILD KANS  T ATA CNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of CmaCh14G015510 vs. NCBI nr
Match: gi|449459806|ref|XP_004147637.1| (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHPRD-PKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQ+PRD PKKS SDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTTTAATA-CNVSS 81
          WSILD KANS  T ATA CNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of CmaCh14G015510 vs. NCBI nr
Match: gi|802706977|ref|XP_012084229.1| (PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas])

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-19
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPF+KACT FNQ PRD KKS  +   E RV V +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD-KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSTTTAATACNVSS 81
          SILDK+ ST      CN++S
Sbjct: 61 SILDKSKSTN-----CNLTS 74

[Close]

BLAST of CmaCh14G015510 vs. NCBI nr
Match: gi|502086264|ref|XP_004488161.1| (PREDICTED: uncharacterized protein LOC101488468 [Cicer arietinum])

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-19
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQHP-RDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI SPF+KACT FNQ P RD KKS  + +Q + +D   L GEVMACGYEDVHVM
Sbjct: 1  MASWKKTITSPFKKACTFFNQQPPRDHKKSQIEQDQNRGMD---LHGEVMACGYEDVHVM 60

Query: 61 WSILDKANSTTTAATACNVSS 81
          WSILDK+ S     TACN++S
Sbjct: 61 WSILDKSKS-----TACNITS 73

[Close]

BLAST of CmaCh14G015510 vs. NCBI nr
Match: gi|629095418|gb|KCW61413.1| (hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTI SPFRKACT FNQ P   KK  S  E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKK--SHQEHEKRVNMMNLQGEVMACAYEDVQVMW 101

Query: 61  SILDKANSTT 71
           SILDK+ + T
Sbjct: 102 SILDKSKAIT 109

The following BLAST results are available for this feature:

BLAST of CmaCh14G015510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G015510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5H1_CUCSA	8.4e-31	90.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1	[more]
A0A067K874_JATCU	3.3e-19	66.25	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1	[more]
A0A059B5L7_EUCGR	7.4e-19	71.43	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 ...	[more]
A0A0L9T617_PHAAN	2.8e-18	65.43	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan213s004100 PE=4 SV=1	[more]
A0A0S3RH73_PHAAN	2.8e-18	65.43	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G294300 PE=...	[more]

BLAST of CmaCh14G015510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17580.1	2.5e-18	56.79	unknown protein	[more]
AT1G48330.1	1.1e-16	56.58	unknown protein	[more]

BLAST of CmaCh14G015510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077054\|ref\|XP_008439007.1\|	4.9e-32	91.46	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
gi\|449459806\|ref\|XP_004147637.1\|	1.2e-30	90.36	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus]	[more]
gi\|802706977\|ref\|XP_012084229.1\|	4.8e-19	66.25	PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]	[more]
gi\|502086264\|ref\|XP_004488161.1\|	8.1e-19	65.43	PREDICTED: uncharacterized protein LOC101488468 [Cicer arietinum]	[more]
gi\|629095418\|gb\|KCW61413.1\|	1.1e-18	71.43	hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015969	guanosine tetraphosphate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G015510.1	CmaCh14G015510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 2..70 score: 8.7
None	No IPR available	PANTHER	PTHR33181:SF10	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MKP6	coord: 2..70 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G015510	Cucsa.252090	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G015510	Cla021837	Watermelon (97103) v1	cmawmB242
CmaCh14G015510	Csa3G171230	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G015510	MELO3C006761	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G015510	ClCG05G006950	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G015510	CSPI03G15450	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G015510	CmoCh06G015890	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G015510	CmoCh14G015870	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G015510	Lsi05G013760	Bottle gourd (USVL1VR-Ls)	cmalsiB246
CmaCh14G015510	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G015510	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G015510	CsaV3_3G015620	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G015510	Cla97C05G088600	Watermelon (97103) v2	cmawmbB263
CmaCh14G015510	Bhi01G000833	Wax gourd	cmawgoB0328
CmaCh14G015510	CsGy3G015520	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G015510	Carg25663	Silver-seed gourd	carcmaB1035
CmaCh14G015510	Carg19589	Silver-seed gourd	carcmaB0391

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G015510	CmaCh06G015940	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G015510	Melon (DHL92) v3.6.1	cmamedB273