Bhi01G000833 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G000833
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	SsrA-binding
Location	chr1 : 22336179 .. 22337423 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATTTAGATAAGAATAAAAAGTTGTGTTGCTCATCCTTCGGATCTTGCCGTCTCTTCTTCTTCTTCTCTCTCTTTTACTAATTTTTCTCTCTATATATTGTGACCCATTTCACTTCCAACGCCTTTCAGCCAAAGGCATTCTCAAACCTCAACATTACTTTACTATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGGAAGGCTTGCACCATCTTCAACCAAAACACTCGAGATCCTAAAAAGTCTCATTCCGATTCAGGTTGGCTCTCGAATCTTTTAAGTACATATTCGAATAGTCATTCTATATCGACTTTAGTTTCTCATATATGTTATATTGTTCGAGTTTTTTTCCTTTCTTGTTTTGAAGTTACAATTCTTTGTTTTAATTTCTTACTACGTATCTATCTAAACATAGTTTACCTGTTTATTAATATCTTCTTCGAAGAATTTGAATTTTCATTCTACAATTGAATTTTTCCCAATTTCATTCTTTGTTTAATTCGGTTTTTCCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAGGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCCATTTTAGACAAGGCCAATTCTATTGCCACTGCTACCACTATCACTTGTAATGTGTCTTCTTAACGACCGATCCCGTCATTCGATGGATGTTAATTACTTAATTGTTGTAGATAAAGTATAATACGTCTCTCTCCCGCTTTCTCTACGTTATTTTGTGAGTTGATGATTTTGTTTATGTGTAGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGATTTTTATTACTCTTAAATCTTGATTAATGCCAAAAAAAGAAAAAGAAAATCCTCTCTCTCTTTTTTCTGGGAAATAGAGCCTTATCTCTGAGGAAAGTGGCTCAGATCTGATTGGTTGGTCATATTTATTTATAATTTATGTATACCACTTTTCAAGGCCTTTATTTGAGAGAGAATAAAAGAGGCTTGGATTTTTATAATGATTTTTTTTCTTGCTGTAAATTACAATAATTTTTAGTCTTACTTATTACATTTTTTTTTTCTATTTTGTTTCTAGTTTGTTAAGGATATCAATCTTGACATGACATGTAGTTTTAATCATTTGCTTTATGAATAGATGTTTACCATTAATGGACAAGTTTGGAGTTTTGAATTATGAAATTGGATGTTGATTAATTAATATGATGAAG

mRNA sequence

ATTTATTTAGATAAGAATAAAAAGTTGTGTTGCTCATCCTTCGGATCTTGCCGTCTCTTCTTCTTCTTCTCTCTCTTTTACTAATTTTTCTCTCTATATATTGTGACCCATTTCACTTCCAACGCCTTTCAGCCAAAGGCATTCTCAAACCTCAACATTACTTTACTATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGGAAGGCTTGCACCATCTTCAACCAAAACACTCGAGATCCTAAAAAGTCTCATTCCGATTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAGGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCCATTTTAGACAAGGCCAATTCTATTGCCACTGCTACCACTATCACTTGTAATGTGTCTTCTTAACGACCGATCCCGTCATTCGATGGATGTTAATTACTTAATTGTTGTAGATAAAGTATAATACGTCTCTCTCCCGCTTTCTCTACGTTATTTTGTGAGTTGATGATTTTGTTTATGTGTAGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGATTTTTATTACTCTTAAATCTTGATTAATGCCAAAAAAAGAAAAAGAAAATCCTCTCTCTCTTTTTTCTGGGAAATAGAGCCTTATCTCTGAGGAAAGTGGCTCAGATCTGATTGGTTGGTCATATTTATTTATAATTTATGTATACCACTTTTCAAGGCCTTTATTTGAGAGAGAATAAAAGAGGCTTGGATTTTTATAATGATTTTTTTTCTTGCTGTAAATTACAATAATTTTTAGTCTTACTTATTACATTTTTTTTTTCTATTTTGTTTCTAGTTTGTTAAGGATATCAATCTTGACATGACATGTAGTTTTAATCATTTGCTTTATGAATAGATGTTTACCATTAATGGACAAGTTTGGAGTTTTGAATTATGAAATTGGATGTTGATTAATTAATATGATGAAG

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGGAAGGCTTGCACCATCTTCAACCAAAACACTCGAGATCCTAAAAAGTCTCATTCCGATTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAGGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCCATTTTAGACAAGGCCAATTCTATTGCCACTGCTACCACTATCACTTGTAATGTGTCTTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMWSILDKANSIATATTITCNVSS

Homology

[Close]

BLAST of Bhi01G000833 vs. TAIR10
Match: AT3G17580.1 (unknown protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-18
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRDPKK-------SHSDSEQEKRVDVRNLQGEVMACGY 60
          MASWKKTI +PF+KA T FNQ  + PKK       + +  E EKR+ V+ LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVHVMWSILDKANS 69
          +DV VMWSILDK+NS
Sbjct: 61 DDVLVMWSILDKSNS 74

[Close]

BLAST of Bhi01G000833 vs. TAIR10
Match: AT1G48330.1 (unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 6.2e-17
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFN--QNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KA T FN  Q T     + +  E EKR  V+ LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKANS 69
          MWSILDK+NS
Sbjct: 61 MWSILDKSNS 69

[Close]

BLAST of Bhi01G000833 vs. TrEMBL
Match: tr|A0A1S3AXS6|A0A1S3AXS6_CUCME (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.8e-34
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQN RDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSIATATTITCNVSS 82
          SILD KANS AT  T TCNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of Bhi01G000833 vs. TrEMBL
Match: tr|A0A0A0L5H1|A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQN RD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSIATATTITCNVSS 82
          WSILD KANS AT  T TCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Bhi01G000833 vs. TrEMBL
Match: tr|A0A059B5L7|A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.1e-19
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTI SPFRKACT FNQ+    KKSH   E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSH--QEHEKRVNMMNLQGEVMACAYEDVQVMW 101

Query: 61  SILDKANSI 70
           SILDK+ +I
Sbjct: 102 SILDKSKAI 108

[Close]

BLAST of Bhi01G000833 vs. TrEMBL
Match: tr|A0A067K874|A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-17
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPF+KACT FNQ  RD KKS  +   E RV V +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD-KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSIATATTITCNVSS 82
          SILDK+ S        CN++S
Sbjct: 61 SILDKSKS------TNCNLTS 74

[Close]

BLAST of Bhi01G000833 vs. TrEMBL
Match: tr|A0A1S2XGT5|A0A1S2XGT5_CICAR (uncharacterized protein LOC101488468 OS=Cicer arietinum OX=3827 GN=LOC101488468 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-17
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQN-TRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTI SPF+KACT FNQ   RD KKS  + +Q + +D   L GEVMACGYEDVHVM
Sbjct: 1  MASWKKTITSPFKKACTFFNQQPPRDHKKSQIEQDQNRGMD---LHGEVMACGYEDVHVM 60

Query: 61 WSILDKANSIATATTITCNVSS 82
          WSILDK+ S A      CN++S
Sbjct: 61 WSILDKSKSTA------CNITS 73

[Close]

BLAST of Bhi01G000833 vs. NCBI nr
Match: XP_008439007.1 (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQN RDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSIATATTITCNVSS 82
          SILD KANS AT  T TCNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of Bhi01G000833 vs. NCBI nr
Match: XP_004147637.1 (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical protein Csa_3G171230 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.5e-32
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQN RD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSIATATTITCNVSS 82
          WSILD KANS AT  T TCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Bhi01G000833 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTIISPFRKACTIFNQ  RDPKKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 117

Query: 61  SILDKANSIATATTITCNVSS 82
           SILDKANS A AT   CNVSS
Sbjct: 118 SILDKANSGAAATA-ACNVSS 137

[Close]

BLAST of Bhi01G000833 vs. NCBI nr
Match: XP_022980000.1 (uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharacterized protein LOC111790878 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 73/81 (90.12%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQ+ RDPKKS SDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSIATATTITCNVSS 82
          SILDKANS  TA T  CNVSS
Sbjct: 61 SILDKANSTTTAAT-ACNVSS 80

[Close]

BLAST of Bhi01G000833 vs. NCBI nr
Match: XP_022935724.1 (uncharacterized protein LOC111442547 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI SP RKACTIFNQ+ RD KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKANS 69
          MWSILDK NS
Sbjct: 61 MWSILDKTNS 70

The following BLAST results are available for this feature:

BLAST of Bhi01G000833 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17580.1	2.5e-18	61.33	unknown protein	[more]
AT1G48330.1	6.2e-17	62.86	unknown protein	[more]

BLAST of Bhi01G000833 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G000833 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXS6\|A0A1S3AXS6_CUCME	6.8e-34	92.68	uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L5H1\|A0A0A0L5H1_CUCSA	1.7e-32	91.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1	[more]
tr\|A0A059B5L7\|A0A059B5L7_EUCGR	8.1e-19	72.46	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04...	[more]
tr\|A0A067K874\|A0A067K874_JATCU	4.4e-17	62.96	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19104 PE=4 SV=1	[more]
tr\|A0A1S2XGT5\|A0A1S2XGT5_CICAR	4.4e-17	62.20	uncharacterized protein LOC101488468 OS=Cicer arietinum OX=3827 GN=LOC101488468 ...	[more]

BLAST of Bhi01G000833 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439007.1	1.0e-33	92.68	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
XP_004147637.1	2.5e-32	91.57	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hy...	[more]
XP_022138108.1	1.6e-31	90.12	uncharacterized protein LOC111009357 [Momordica charantia]	[more]
XP_022980000.1	1.6e-31	90.12	uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharac...	[more]
XP_022935724.1	1.9e-24	85.71	uncharacterized protein LOC111442547 [Cucurbita moschata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000833	Bhi01M000833	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 1..72
None	No IPR available	PANTHER	PTHR33181:SF10	SUBFAMILY NOT NAMED	coord: 1..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G000833	Csa3G171230	Cucumber (Chinese Long) v2	cuwgoB269
Bhi01G000833	MELO3C006761	Melon (DHL92) v3.5.1	mewgoB529
Bhi01G000833	ClCG05G006950	Watermelon (Charleston Gray)	wcgwgoB426
Bhi01G000833	CSPI03G15450	Wild cucumber (PI 183967)	cpiwgoB269
Bhi01G000833	Cucsa.252090	Cucumber (Gy14) v1	cgywgoB522
Bhi01G000833	CmaCh06G015940	Cucurbita maxima (Rimu)	cmawgoB1006
Bhi01G000833	CmaCh14G015510	Cucurbita maxima (Rimu)	cmawgoB0328
Bhi01G000833	CmoCh06G015890	Cucurbita moschata (Rifu)	cmowgoB1005
Bhi01G000833	CmoCh14G015870	Cucurbita moschata (Rifu)	cmowgoB0317
Bhi01G000833	Lsi05G013760	Bottle gourd (USVL1VR-Ls)	lsiwgoB444
Bhi01G000833	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	cpewgoB0783
Bhi01G000833	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	cpewgoB1110
Bhi01G000833	CsGy3G015520	Cucumber (Gy14) v2	cgybwgoB257
Bhi01G000833	Carg25663	Silver-seed gourd	carwgoB0876
Bhi01G000833	CsaV3_3G015620	Cucumber (Chinese Long) v3	cucwgoB272
Bhi01G000833	Cla021837	Watermelon (97103) v1	wgowmB201
Bhi01G000833	Cla97C05G088600	Watermelon (97103) v2	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G000833	Melon (DHL92) v3.6.1	medwgoB530
Bhi01G000833	Silver-seed gourd	carwgoB0365