Lsi05G001100 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTATTTACGAAAGATTTTTTTTTCTTTATATTATTATTTAGGAAAAGGCCGTGCTCTGTTCTATTAGGTTTTTCAGTTGAACTGAAGCGATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGGTTGTTCTCTCTTTCTCTCTAAGCTCATAAATGTATAATTACGAGTTTTCCTTTGATTGTATGGCATATGCTTTTAAATCGATTTACTTGTAGCACTTGGGTGAGCTTTGCCTCTTTAACTTTATCGTAATTCTCTTCTGATTAATTCGTTTTGTTCTTTCTCTGCTTCACTGCAATTTTCACAAACAAAATAAGAAATGATGATCATCATCATCATGTTCTTGCTCTTGCTCTTCGCAACCCTTTTTTTTTAACCCTGAAATTTCTATTTTTTGTTCCTGAAACATCCAGAGTTTGTGACTAGAGTTGTGTCACAAAAGCTCACCATTGTATGCCTTGAATCTATTATTTAGTGCTTTGAATGACCAAGCACGGGTTTTGATTTATGTTGTTTACGATTTCAGCCTTAGTGTGTTATATTATATATAAACTCTCTACCTACATTTTTTTAAAAATATTCGTGAATGTCTGGCCCAATTTATATGCACCTCGACTAATCTCACGAGACAACCTGCTTAACCCTATAACATTTGAGTGTCGAGGAAACTCGTAGAAAATTAATTCTTAGATAAGTGGCCACCATAGATTGAACCCCTGACCTCTTAGTCATTGTTAGTCATTCATTGAGACTATGTCTCCTTTTTACCATTAAGTCAACCCTTGTAGTTAACACATAGTTAGTGAGACATGCAAATTTCTGTGTTGATGTCTCTACGGTTTACATTTTATGTTTCCTTTTATTGTTGATTTCATAACACTCACATATGTCATTGAATTCTTAATTGTTGAAATGAAATGGACCTTTTTAACTAGCCAAAGCTCTGTTCTTTTGCTGTGGTTTCTGGAAGCCAAAGTTGTTTTTTTTTTAGTCTTGTCAGCGTTCGACAATTGCTATTTGTTTCTGAAATGGTCATTGTAGTTGCTTCTTTCTTTAAAAGAGCAACAACTGTGTTGGATCATACATTGAAAACATGCTATTCAACTCATTGTTAGCGATCTTTCATCTCTTCTAGATTGCCTTCGTAGAGACAGGACAAGTAATTTGCTTCTTTTTCCGAGTGTATTGAATCTGGTTTGCTCTCTGCAGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGGTGCTTCTCGATGATATCAATCTTCACATTGTGCCTCAAAAGTTAACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACGTGAGCCTCTTTTGCTCCTTGCATTCCTAGTTTTTAATGTACTTTATAGCATAATACAGGATTCTTTAGAGCATTAGTAATGCTATTGCACTCTTAATTCCTTGCGATCATATTTTGTAGACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGATAGCCTTACTGATCTATTTACATGCCTCTCAAATATCAAGTGTCATTTTTTTCCTTAAAGTAACTGTGATTTTAATTCACATCTGACCTGTAATTTCATCACAATGTTTTGTTGTTTGATCGAGTGTGAAGGTCTTTCTGCACCCATCATTCGAACATTGAGATCTAACAAGCAATACACATTCTCCTATATTACTCCTTACATTCAGCCA TATTATTTACGAAAGATTTTTTTTTCTTTATATTATTATTTAGGAAAAGGCCGTGCTCTGTTCTATTAGGTTTTTCAGTTGAACTGAAGCGATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGATAGCCTTACTGATCTATTTACATGCCTCTCAAATATCAAGTGTCATTTTTTTCCTTAAAGTAACTGTGATTTTAATTCACATCTGACCTGTAATTTCATCACAATGTTTTGTTGTTTGATCGAGTGTGAAGGTCTTTCTGCACCCATCATTCGAACATTGAGATCTAACAAGCAATACACATTCTCCTATATTACTCCTTACATTCAGCCA ATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGA MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
BLAST of Lsi05G001100 vs. TrEMBL
Match: A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 5.0e-41 Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 1
BLAST of Lsi05G001100 vs. TrEMBL
Match: M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 1.3e-33 Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1
BLAST of Lsi05G001100 vs. TrEMBL
Match: A0A124SFY0_CYNCS (EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_017027 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 2.7e-31 Identity = 68/84 (80.95%), Postives = 78/84 (92.86%), Query Frame = 1
BLAST of Lsi05G001100 vs. TrEMBL
Match: B9I1X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02410g PE=4 SV=2) HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31 Identity = 71/94 (75.53%), Postives = 83/94 (88.30%), Query Frame = 1
BLAST of Lsi05G001100 vs. TrEMBL
Match: V7CVI7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G057400g PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 6.1e-31 Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 1
BLAST of Lsi05G001100 vs. TAIR10
Match: AT5G53045.1 (AT5G53045.1 unknown protein) HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29 Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 1
BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|659133652|ref|XP_008466840.1| (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo]) HSP 1 Score: 179.5 bits (454), Expect = 2.9e-42 Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 1
BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|449456983|ref|XP_004146228.1| (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 7.1e-41 Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 1
BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|700202525|gb|KGN57658.1| (hypothetical protein Csa_3G238730 [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 7.1e-41 Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 1
BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|596012112|ref|XP_007218647.1| (hypothetical protein PRUPE_ppa013862mg [Prunus persica]) HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33 Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1
BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|470144659|ref|XP_004307966.1| (PREDICTED: uncharacterized protein LOC101306760 [Fragaria vesca subsp. vesca]) HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33 Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |