Lsi05G001100 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G001100
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranscription factor Pcc1
Locationchr05 : 1837521 .. 1839409 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTATTTACGAAAGATTTTTTTTTCTTTATATTATTATTTAGGAAAAGGCCGTGCTCTGTTCTATTAGGTTTTTCAGTTGAACTGAAGCGATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGGTTGTTCTCTCTTTCTCTCTAAGCTCATAAATGTATAATTACGAGTTTTCCTTTGATTGTATGGCATATGCTTTTAAATCGATTTACTTGTAGCACTTGGGTGAGCTTTGCCTCTTTAACTTTATCGTAATTCTCTTCTGATTAATTCGTTTTGTTCTTTCTCTGCTTCACTGCAATTTTCACAAACAAAATAAGAAATGATGATCATCATCATCATGTTCTTGCTCTTGCTCTTCGCAACCCTTTTTTTTTAACCCTGAAATTTCTATTTTTTGTTCCTGAAACATCCAGAGTTTGTGACTAGAGTTGTGTCACAAAAGCTCACCATTGTATGCCTTGAATCTATTATTTAGTGCTTTGAATGACCAAGCACGGGTTTTGATTTATGTTGTTTACGATTTCAGCCTTAGTGTGTTATATTATATATAAACTCTCTACCTACATTTTTTTAAAAATATTCGTGAATGTCTGGCCCAATTTATATGCACCTCGACTAATCTCACGAGACAACCTGCTTAACCCTATAACATTTGAGTGTCGAGGAAACTCGTAGAAAATTAATTCTTAGATAAGTGGCCACCATAGATTGAACCCCTGACCTCTTAGTCATTGTTAGTCATTCATTGAGACTATGTCTCCTTTTTACCATTAAGTCAACCCTTGTAGTTAACACATAGTTAGTGAGACATGCAAATTTCTGTGTTGATGTCTCTACGGTTTACATTTTATGTTTCCTTTTATTGTTGATTTCATAACACTCACATATGTCATTGAATTCTTAATTGTTGAAATGAAATGGACCTTTTTAACTAGCCAAAGCTCTGTTCTTTTGCTGTGGTTTCTGGAAGCCAAAGTTGTTTTTTTTTTAGTCTTGTCAGCGTTCGACAATTGCTATTTGTTTCTGAAATGGTCATTGTAGTTGCTTCTTTCTTTAAAAGAGCAACAACTGTGTTGGATCATACATTGAAAACATGCTATTCAACTCATTGTTAGCGATCTTTCATCTCTTCTAGATTGCCTTCGTAGAGACAGGACAAGTAATTTGCTTCTTTTTCCGAGTGTATTGAATCTGGTTTGCTCTCTGCAGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGGTGCTTCTCGATGATATCAATCTTCACATTGTGCCTCAAAAGTTAACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACGTGAGCCTCTTTTGCTCCTTGCATTCCTAGTTTTTAATGTACTTTATAGCATAATACAGGATTCTTTAGAGCATTAGTAATGCTATTGCACTCTTAATTCCTTGCGATCATATTTTGTAGACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGATAGCCTTACTGATCTATTTACATGCCTCTCAAATATCAAGTGTCATTTTTTTCCTTAAAGTAACTGTGATTTTAATTCACATCTGACCTGTAATTTCATCACAATGTTTTGTTGTTTGATCGAGTGTGAAGGTCTTTCTGCACCCATCATTCGAACATTGAGATCTAACAAGCAATACACATTCTCCTATATTACTCCTTACATTCAGCCA

mRNA sequence

TATTATTTACGAAAGATTTTTTTTTCTTTATATTATTATTTAGGAAAAGGCCGTGCTCTGTTCTATTAGGTTTTTCAGTTGAACTGAAGCGATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGATAGCCTTACTGATCTATTTACATGCCTCTCAAATATCAAGTGTCATTTTTTTCCTTAAAGTAACTGTGATTTTAATTCACATCTGACCTGTAATTTCATCACAATGTTTTGTTGTTTGATCGAGTGTGAAGGTCTTTCTGCACCCATCATTCGAACATTGAGATCTAACAAGCAATACACATTCTCCTATATTACTCCTTACATTCAGCCA

Coding sequence (CDS)

ATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAACCAGACAAGGTGAAAAGGATGATGTCAGTTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGAAGTGGATTTCTGA

Protein sequence

MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
BLAST of Lsi05G001100 vs. TrEMBL
Match: A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.0e-41
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVAS GE KWEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR MS SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of Lsi05G001100 vs. TrEMBL
Match: M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-33
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1

Query: 1  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
          MA  AS  +DG+ +WEFSCD EVDYESE+ ASIVY AL +DKELQPDKVKR MSVS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD 99
          S HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+ ++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of Lsi05G001100 vs. TrEMBL
Match: A0A124SFY0_CYNCS (EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_017027 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-31
Identity = 68/84 (80.95%), Postives = 78/84 (92.86%), Query Frame = 1

Query: 15  WEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHFEAVEARFLRA 74
           WEFSCD EVDY+SE+KA IVY+AL +DKELQPDKV+R+MS+SDGKLS HFEAVEARFLRA
Sbjct: 20  WEFSCDLEVDYKSEEKAGIVYSALAVDKELQPDKVRRLMSISDGKLSVHFEAVEARFLRA 79

Query: 75  SFSAFVDVLTLATKTIEDFGQEVD 99
           SFSAFVDVLTLATKTIE FG+ ++
Sbjct: 80  SFSAFVDVLTLATKTIEQFGEGIE 103

BLAST of Lsi05G001100 vs. TrEMBL
Match: B9I1X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02410g PE=4 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 71/94 (75.53%), Postives = 83/94 (88.30%), Query Frame = 1

Query: 2   APTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLS 61
           A  A+ A+  +A+W+FSCDFEVD+ SE+ ASIVY AL +DKELQPDKVKR+MSVS+GKLS
Sbjct: 36  AAAAAAAAAMDAQWDFSCDFEVDFGSEENASIVYAALAVDKELQPDKVKRLMSVSNGKLS 95

Query: 62  THFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
            HFEAVEARFLRASFSAFVDVLTL TKTIE+FG+
Sbjct: 96  VHFEAVEARFLRASFSAFVDVLTLTTKTIEEFGK 129

BLAST of Lsi05G001100 vs. TrEMBL
Match: V7CVI7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G057400g PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-31
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 1

Query: 5  ASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKLSTHF 64
          AS     + +WEFSCD E+D+ SE+ ASIVY AL +DKELQPDKVKR MSVSDGKLS HF
Sbjct: 2  ASTTPHSQPQWEFSCDMEMDFGSEENASIVYTALAVDKELQPDKVKRGMSVSDGKLSVHF 61

Query: 65 EAVEARFLRASFSAFVDVLTLATKTIEDFGQEV 98
          EA EARFLRASFSAFVDVLTLATKTIE+FGQE+
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEEFGQEM 94

BLAST of Lsi05G001100 vs. TAIR10
Match: AT5G53045.1 (AT5G53045.1 unknown protein)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 1

Query: 1  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
          MA T    +  +  W+FSC+ +V +ESE+ A I Y +L +DKELQPDKV+R+MSVS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          S HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ+
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQK 96

BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|659133652|ref|XP_008466840.1| (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-42
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 1

Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALI+DKELQPDKVKR MS+S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|449456983|ref|XP_004146228.1| (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 7.1e-41
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVAS GE KWEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR MS SDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|700202525|gb|KGN57658.1| (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 7.1e-41
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
           M PTASVAS GE KWEFSCDFEVDYESEKKASIVY AL++DKELQPDKVKR MS SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 100
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|596012112|ref|XP_007218647.1| (hypothetical protein PRUPE_ppa013862mg [Prunus persica])

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1

Query: 1  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
          MA  AS  +DG+ +WEFSCD EVDYESE+ ASIVY AL +DKELQPDKVKR MSVS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD 99
          S HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+ ++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of Lsi05G001100 vs. NCBI nr
Match: gi|470144659|ref|XP_004307966.1| (PREDICTED: uncharacterized protein LOC101306760 [Fragaria vesca subsp. vesca])

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1

Query: 1  MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIIDKELQPDKVKRMMSVSDGKL 60
          MA  AS  +DG+ +WEFSCD EVDYESE+ ASIVYN L +DKELQPDKVKR MSVS+GKL
Sbjct: 1  MAAMASDKADGQTQWEFSCDMEVDYESEEIASIVYNTLAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD 99
          S HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+ ++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7A2_CUCSA5.0e-4189.90Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1[more]
M5X2X8_PRUPE1.3e-3376.53Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1[more]
A0A124SFY0_CYNCS2.7e-3180.95EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_0170... [more]
B9I1X5_POPTR4.7e-3175.53Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02410g PE=4 SV=2[more]
V7CVI7_PHAVU6.1e-3176.34Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G057400g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G53045.11.8e-2962.50 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659133652|ref|XP_008466840.1|2.9e-4290.91PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo][more]
gi|449456983|ref|XP_004146228.1|7.1e-4189.90PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
gi|700202525|gb|KGN57658.1|7.1e-4189.90hypothetical protein Csa_3G238730 [Cucumis sativus][more]
gi|596012112|ref|XP_007218647.1|1.9e-3376.53hypothetical protein PRUPE_ppa013862mg [Prunus persica][more]
gi|470144659|ref|XP_004307966.1|1.9e-3376.53PREDICTED: uncharacterized protein LOC101306760 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001100.1Lsi05G001100.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 18..91
score: 3.5
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 12..97
score: 1.1
NoneNo IPR availablePANTHERPTHR31283:SF5PROTEIN F59A2.5coord: 12..97
score: 1.1

The following gene(s) are paralogous to this gene:

None