CmoCh16G000470 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G000470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription factor Pcc1
LocationCmo_Chr16 : 198005 .. 199781 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACAAACCCTAGAAGGCGAAGAAGGCGAAGCAGAAGGCGAAGAGAGGTTATGATGATGCAAGTAGAAATCCATCCGCTTCACCGGCTCCACAGTTTACTGGAAGATGTGCAGTCCACTGCTCCTACACGACGCCGTTTCTCAAGGGTCCTCTGACTCCCTCTTTGCCATTTCTGTCCTCTAATTATCTAAATCTCAGTGGATAAAGCATGTTAACCATTCCTGTAAATCCAAACTCCCTGTGGTTAGTACCCATAACTCCTTTCTATTATTTTTATTTTTACTTTTACCTTTATTATTTTATTGTTACTAAATCCCAGTATTCTTTTCTTATTGTCGCTAAATCCTAATATTCTTTTGACCAAATAAATTTTAAATTTTAAATTTTAAATTTTAATTTCAAAACAAAAATCATTCGCATACACTATTTCAAAAAGGAAAAGAAAATAATGTTATTAACTCACTTTAAAACTCTTTTCAAATGTGTCATCAATTGAAACACTTTTTATTGAAAAAAAACATTCAAGAAAGGAATATATTTCTTTTCATATGTGGTTTCTAGTAAGTTCTTTTTAGTTTTCATGCATTTATTAGGCTTATAATAGCTGAAGTTATTACCTATTTTACCACATAATTTTTAAAACAATACATAATTTTTTGGTCTCATCAAACTCTAACAAATGGGTTGGAATTATTAACCGCCAACACTGTTACAATGTTGCTGTTTTAGCTTTTGGGTGAGCTTCGCCTTTTTAGCTTTATCGTATTTCTCTTGTGATTAATCGGTTATGTTCTTTCTCTGGTTCACTGGTTTTTCCACGGGGGGGAAAAAAAAGACAATGATGATGATGATGTTCTTGCAACTGGCAAGCCATTTTTACCCCGAAAGCTCAAATTTTTGTTTTGTGACTAGAGTAGTGTCTCGAAAGCTCAGAAATGCCATTAATTCTCAATTGTTGGAATGGAAGGACCTTTTTAACTAGCCAAAGCTCTGATCTTTCGCTGTGGTTCCTGGAAGCAACTGATGTTTTTTGGGTCTTGCCAGCGATCAACCATTGCTATTTTATCTTTCATCTTTTCTTGATTGCCTTCCTAGAGAGACAGAACAAGTAATTTGCCTCTTTTTCCAAGTATTGAATCTGGTTTGCTCTATGCAGTGACTTTGAAGTCGATTATGAGTCAGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGGTGCTTCTCCATGATATCAATCTTCACATTGTGCCTCCGTAATTAACTTGTTTCTGATTCCATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATGTGAGCCTCTTTTTCTCTTCGAATCCCTGGTTCTTAATGTACCAAAATAGCTTAATACAGGATTCTTTTGAGCATTAGTAAGGCTGCTGCGTTCATATTTCTCTGCAATCATGTTTTGGCTCTTTTTTTTTTTTTTCTCGTAGACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACGAGGAGTGGATTTCTGATAGCCTTACATGCCCCTGGCCCTCATATATCAACTGTCACTTTATGCTTAAAATAGCTATCATTTTAATTTACTACCTATCTGTAATTTTACCACAATATGATTTGTAGTGGTTTGATCGAGTGTGAAGGTACTCATTCCAACATTGAGATCTA

mRNA sequence

TTACAAACCCTAGAAGGCGAAGAAGGCGAAGCAGAAGGCGAAGAGAGGTTATGATGATGCAAGTAGAAATCCATCCGCTTCACCGGCTCCACAGTTTACTGGAAGATGTGCAGTCCACTGCTCCTACACGACGCCGTTTCTCAAGGGTCCTCTGACTCCCTCTTTGCCATTTCTGTCCTCTAATTATCTAAATCTCAGTGGATAAAGCATGTTAACCATTCCTGTAAATCCAAACTCCCTGTGTGACTTTGAAGTCGATTATGAGTCAGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACGAGGAGTGGATTTCTGATAGCCTTACATGCCCCTGGCCCTCATATATCAACTGTCACTTTATGCTTAAAATAGCTATCATTTTAATTTACTACCTATCTGTAATTTTACCACAATATGATTTGTAGTGGTTTGATCGAGTGTGAAGGTACTCATTCCAACATTGAGATCTA

Coding sequence (CDS)

ATGTTAACCATTCCTGTAAATCCAAACTCCCTGTGTGACTTTGAAGTCGATTATGAGTCAGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACGAGGAGTGGATTTCTGA
BLAST of CmoCh16G000470 vs. TrEMBL
Match: A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-31
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1

Query: 12  CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
           CDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKLSIH EAVEARFLRASFSA
Sbjct: 77  CDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHFEAVEARFLRASFSA 136

Query: 72  FVDVLTLATKTIEDFGRGVDF 93
           FVDVLTLATKTIEDFG+  DF
Sbjct: 137 FVDVLTLATKTIEDFGQEEDF 157

BLAST of CmoCh16G000470 vs. TrEMBL
Match: M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 65/80 (81.25%), Postives = 75/80 (93.75%), Query Frame = 1

Query: 12 CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
          CD EVDYESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKLS+H EAVEARFLRAS+SA
Sbjct: 19 CDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKLSVHFEAVEARFLRASYSA 78

Query: 72 FVDVLTLATKTIEDFGRGVD 92
          FVDVLTLATKTIE+FG+G++
Sbjct: 79 FVDVLTLATKTIEEFGKGME 98

BLAST of CmoCh16G000470 vs. TrEMBL
Match: A0A124SFY0_CYNCS (EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_017027 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 67/89 (75.28%), Postives = 75/89 (84.27%), Query Frame = 1

Query: 3   TIPVNPNSLCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEA 62
           TIP      CD EVDY+SE+KA IVY AL VDKELQPDKV+R M++SDGKLS+H EAVEA
Sbjct: 15  TIPSPWEFSCDLEVDYKSEEKAGIVYSALAVDKELQPDKVRRLMSISDGKLSVHFEAVEA 74

Query: 63  RFLRASFSAFVDVLTLATKTIEDFGRGVD 92
           RFLRASFSAFVDVLTLATKTIE FG G++
Sbjct: 75  RFLRASFSAFVDVLTLATKTIEQFGEGIE 103

BLAST of CmoCh16G000470 vs. TrEMBL
Match: B9IDP4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s01390g PE=4 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-27
Identity = 64/79 (81.01%), Postives = 73/79 (92.41%), Query Frame = 1

Query: 12 CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
          CDFEVD+ SE+ ASI+Y AL VDKELQPDKVKR M+VSDGKLS+H EAVEARFLRASFSA
Sbjct: 14 CDFEVDFGSEENASIIYAALAVDKELQPDKVKRLMSVSDGKLSVHFEAVEARFLRASFSA 73

Query: 72 FVDVLTLATKTIEDFGRGV 91
          FVDVLTL+TKTIE+FG+G+
Sbjct: 74 FVDVLTLSTKTIEEFGKGM 92

BLAST of CmoCh16G000470 vs. TrEMBL
Match: E0CV60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01710 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1

Query: 3   TIPVNPNSLCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEA 62
           T+P      CD EVDYES++ ASIVY AL VDKEL PDKVKR+M+VSDGKLS+H E VEA
Sbjct: 13  TLPSEWGFSCDLEVDYESQEIASIVYSALDVDKELHPDKVKRQMSVSDGKLSVHFEGVEA 72

Query: 63  RFLRASFSAFVDVLTLATKTIEDFGRGVD 92
           RFLRASFSAFVDVLTLATKT E+FG+G++
Sbjct: 73  RFLRASFSAFVDVLTLATKTAEEFGKGME 101

BLAST of CmoCh16G000470 vs. TAIR10
Match: AT5G53045.1 (AT5G53045.1 unknown protein)

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-24
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 1

Query: 12 CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
          C+ +V +ESE+ A I Y +L VDKELQPDKV+R M+VS+ KLS+H EA+EAR LRASFSA
Sbjct: 19 CNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKLSVHFEAIEARLLRASFSA 78

Query: 72 FVDVLTLATKTIEDFGR 89
          FVDVLTLAT+TI++FG+
Sbjct: 79 FVDVLTLATRTIQEFGQ 95

BLAST of CmoCh16G000470 vs. NCBI nr
Match: gi|449456983|ref|XP_004146228.1| (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1

Query: 12 CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
          CDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKLSIH EAVEARFLRASFSA
Sbjct: 19 CDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHFEAVEARFLRASFSA 78

Query: 72 FVDVLTLATKTIEDFGRGVDF 93
          FVDVLTLATKTIEDFG+  DF
Sbjct: 79 FVDVLTLATKTIEDFGQEEDF 99

BLAST of CmoCh16G000470 vs. NCBI nr
Match: gi|700202525|gb|KGN57658.1| (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1

Query: 12  CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
           CDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKLSIH EAVEARFLRASFSA
Sbjct: 77  CDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHFEAVEARFLRASFSA 136

Query: 72  FVDVLTLATKTIEDFGRGVDF 93
           FVDVLTLATKTIEDFG+  DF
Sbjct: 137 FVDVLTLATKTIEDFGQEEDF 157

BLAST of CmoCh16G000470 vs. NCBI nr
Match: gi|659133652|ref|XP_008466840.1| (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-30
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 1

Query: 12 CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
          CDFEVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKLSIH EAVEARFLRASFS+
Sbjct: 19 CDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKLSIHFEAVEARFLRASFSS 78

Query: 72 FVDVLTLATKTIEDFGRGVDF 93
          FVDVLTLATKTIEDFG  V+F
Sbjct: 79 FVDVLTLATKTIEDFGLEVEF 99

BLAST of CmoCh16G000470 vs. NCBI nr
Match: gi|976919866|gb|KVI04653.1| (EKC/KEOPS complex, subunit Pcc1 [Cynara cardunculus var. scolymus])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-28
Identity = 67/89 (75.28%), Postives = 75/89 (84.27%), Query Frame = 1

Query: 3   TIPVNPNSLCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEA 62
           TIP      CD EVDY+SE+KA IVY AL VDKELQPDKV+R M++SDGKLS+H EAVEA
Sbjct: 15  TIPSPWEFSCDLEVDYKSEEKAGIVYSALAVDKELQPDKVRRLMSISDGKLSVHFEAVEA 74

Query: 63  RFLRASFSAFVDVLTLATKTIEDFGRGVD 92
           RFLRASFSAFVDVLTLATKTIE FG G++
Sbjct: 75  RFLRASFSAFVDVLTLATKTIEQFGEGIE 103

BLAST of CmoCh16G000470 vs. NCBI nr
Match: gi|596012112|ref|XP_007218647.1| (hypothetical protein PRUPE_ppa013862mg [Prunus persica])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-28
Identity = 65/80 (81.25%), Postives = 75/80 (93.75%), Query Frame = 1

Query: 12 CDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSA 71
          CD EVDYESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKLS+H EAVEARFLRAS+SA
Sbjct: 19 CDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKLSVHFEAVEARFLRASYSA 78

Query: 72 FVDVLTLATKTIEDFGRGVD 92
          FVDVLTLATKTIE+FG+G++
Sbjct: 79 FVDVLTLATKTIEEFGKGME 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7A2_CUCSA1.5e-3191.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1[more]
M5X2X8_PRUPE1.2e-2881.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1[more]
A0A124SFY0_CYNCS1.2e-2875.28EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_0170... [more]
B9IDP4_POPTR1.0e-2781.01Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s01390g PE=4 SV=2[more]
E0CV60_VITVI1.3e-2773.03Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01710 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT5G53045.12.7e-2467.53 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449456983|ref|XP_004146228.1|2.1e-3191.36PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
gi|700202525|gb|KGN57658.1|2.1e-3191.36hypothetical protein Csa_3G238730 [Cucumis sativus][more]
gi|659133652|ref|XP_008466840.1|2.4e-3086.42PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo][more]
gi|976919866|gb|KVI04653.1|1.7e-2875.28EKC/KEOPS complex, subunit Pcc1 [Cynara cardunculus var. scolymus][more]
gi|596012112|ref|XP_007218647.1|1.7e-2881.25hypothetical protein PRUPE_ppa013862mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000470.1CmoCh16G000470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 13..84
score: 7.0
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 12..87
score: 1.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G000470CmoCh18G013540Cucurbita moschata (Rifu)cmocmoB274