Carg15058 (gene) Silver-seed gourd

NameCarg15058
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEKC/KEOPS complex, subunit Pcc1
LocationCucurbita_argyrosperma_scaffold_078 : 313809 .. 315392 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTATTAGTTATTACCTATTTTACCACATAATTTTTAAAACTCTTAACAAATGGGTTGGAATTATTAACCGCTAAGACTGTTCCCACGACGCCGACCGTGCCCAGTCCGCGAAGTTGATGCGTGGGCCGCACAATGTGAATATCACCGCTTAACCAGGTATCCGTGAAATTATTTTTTTAAAATAATAAAAGAAACGCCCCATTTTAGTTATGGAGCTCTGAAAAATTTACATTCATTTTTTCAATTATTTACGAAGAAACCAACAAAATGGCCGTATCTCTTATGCTAGGTTATTTGGGGGGAAAATCCGGCGCTTTTCAACCAGAATTGAAGCTATGGCTCCGACACCTTCCCTCGCTTCTCATGGAGACCCCAAGTGGGAATTCAGCTGGTTGTTCTCTCTTTCTCTAACCCCATAAATGTATATTTACATGCTTTCCTTCGATTGTATGCCATATGCTTTTATATCAGTTTGTTCGTTGATGTTGCTGTGTTAGCTTTTGGGTGAGCTTCGCCTTTTTAGCTTTATCATATTTCTCTTGTGATTAATCGGTTATGTTCTTTCTCTGGTTCACTGGTTTTTCCACGGGGGGGAAAAAAAAGACAATGATGATGATGATGTTCTTGCAACTGGCAAGCCATTTTTACCCCGAAAGCTCAAATTTTTGTTTTGTGACTAGAGTAGTGGTCTCGAAAGCTCAGAAATGCCATTAATTCTCAATTGTTGGAATGATGGACCTTTTTAACTAGCCAAAGCTCTGATCTTTCGCTGTGGTTCCTGGAAGCAAATGATGTTTTTTGGGTCTTGCCAGCGATCAACCATTGCTATTTTATCTTTCATCTTTTCTTGATTGCCTTCCTAGAGAGACAGAACAAGTAATTTGGCTCTTTTTCCAAGTATTGAATCTGGTTTGCTCTCTGCAGTGACCTTGAAGTCGATTATGAGTCAGAGAAGAAGGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGGTGCTTCTCCATGATATCAATCTTCACATTGTGCCTCCGTATAGTTAACTTGTTTCTGATTCCATTTCTGTGCTAACTACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATGTGAGCCTCTTTTTCTCTTCGAATCCCTGGTTCTTAATGTACGATTAACAGTAGATAGATACCAAAATAGCTTAATGCAGGATTCTTTTGAGCATTAGTAAGGCTGCTGCGTTCATATTTCTCTGCAATCATGTTTTGGCATTCCCATTAGCTGCTCATTTTTTTTCTCGTAGACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGAGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGATAGCCTTACATGCCCCTGGCCCTCATATTTCAACTGTCACTTTATGCTTAAAATAGCTATCATTTTAATTTACTACCTATCTGTAATTTTATCACAATATGATTTGTAGTGGTTTGATCGAGTGTGAAGGTACTCATTCCAACATTGAGATCTAA

mRNA sequence

ATGCATTTATTAGTTATTACCTATTTTACCACATAATTTTTAAAACTCTTAACAAATGGGTTGGAATTATTAACCGCTAAGACTGTTCCCACGACGCCGACCGTGCCCAGTCCGCGAAGTTGATGCGTGGGCCGCACAATGTGAATATCACCGCTTAACCAGGTTATTTGGGGGGAAAATCCGGCGCTTTTCAACCAGAATTGAAGCTATGGCTCCGACACCTTCCCTCGCTTCTCATGGAGACCCCAAGTGGGAATTCAGCTGTGACCTTGAAGTCGATTATGAGTCAGAGAAGAAGGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGAGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGATAGCCTTACATGCCCCTGGCCCTCATATTTCAACTGTCACTTTATGCTTAAAATAGCTATCATTTTAATTTACTACCTATCTGTAATTTTATCACAATATGATTTGTAGTGGTTTGATCGAGTGTGAAGGTACTCATTCCAACATTGAGATCTAA

Coding sequence (CDS)

ATGGCTCCGACACCTTCCCTCGCTTCTCATGGAGACCCCAAGTGGGAATTCAGCTGTGACCTTGAAGTCGATTATGAGTCAGAGAAGAAGGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGAGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGA

Protein sequence

MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF
BLAST of Carg15058 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 3.9e-43
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0

Query: 1   MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PTPS+AS G+P WEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 100
           SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

BLAST of Carg15058 vs. NCBI nr
Match: XP_004146228.1 (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-40
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT S+ASHG+PKWEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 100
           SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQ  DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

BLAST of Carg15058 vs. NCBI nr
Match: KGN57658.1 (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-40
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT S+ASHG+PKWEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 100
           SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of Carg15058 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 1   MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           MAPT S+AS G+ KWEF CD EVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVD 99
           S+H EAVEARFLRASFSAFVDVLTLATKTIEDFGQG+D
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

BLAST of Carg15058 vs. NCBI nr
Match: XP_022945934.1 (uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 uncharacterized protein LOC111801345 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 5.8e-39
Identity = 85/99 (85.86%), Postives = 90/99 (90.91%), Query Frame = 0

Query: 1   MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           MAPT S+ S GD KWEFSCD EVD ESEKKASIVY ALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 100
           S+H EAVEARFLRAS+SAF+DVLTLA KTIEDFGQG+DF
Sbjct: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

BLAST of Carg15058 vs. TAIR10
Match: AT5G53045.1 (unknown protein)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 0

Query: 1  MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MA T    +  D  W+FSC+L+V +ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
          S+H EA+EAR LRASFSAFVDVLTLAT+TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

BLAST of Carg15058 vs. TrEMBL
Match: tr|A0A0A0L7A2|A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT S+ASHG+PKWEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 100
           SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of Carg15058 vs. TrEMBL
Match: tr|A0A1S3CTG0|A0A1S3CTG0_CUCME (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-37
Identity = 81/99 (81.82%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 1   MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT S+AS G+ KWEFSCD EVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 100
           SIH EAVEARFLRASFS+FVDVLTLATKTIEDFG  V+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of Carg15058 vs. TrEMBL
Match: tr|M5X2X8|M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G312900 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 74/98 (75.51%), Postives = 86/98 (87.76%), Query Frame = 0

Query: 1  MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MA   S  + G  +WEFSCDLEVDYESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVD 99
          S+H EAVEARFLRAS+SAFVDVLTLATKTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of Carg15058 vs. TrEMBL
Match: tr|A0A1R3IZB8|A0A1R3IZB8_COCAP (EKC/KEOPS complex, subunit Pcc1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_08655 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.2e-33
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 0

Query: 5   PSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHL 64
           P  +S    +WEFSCDLEVD+ESE+KASIVY AL VDKELQPDKVKREM++SDGKLS+H 
Sbjct: 331 PKKSSDAPNQWEFSCDLEVDFESEEKASIVYSALAVDKELQPDKVKREMSISDGKLSVHF 390

Query: 65  EAVEARFLRASFSAFVDVLTLATKTIEDFGQGVD 99
           EAVEARFLRASFSAFVDVLTLATKTIE+ G G++
Sbjct: 391 EAVEARFLRASFSAFVDVLTLATKTIEELGPGME 424

BLAST of Carg15058 vs. TrEMBL
Match: tr|A0A1R3JFI5|A0A1R3JFI5_9ROSI (EKC/KEOPS complex, subunit Pcc1 OS=Corchorus olitorius OX=93759 GN=COLO4_16787 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.0e-32
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 0

Query: 9  SHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVE 68
          S    +WEFSCDLEVD+ESE+ ASIVY AL VDKELQPDKVKREM++SDGKLS+H EAVE
Sbjct: 8  SDASNQWEFSCDLEVDFESEENASIVYSALAVDKELQPDKVKREMSISDGKLSVHFEAVE 67

Query: 69 ARFLRASFSAFVDVLTLATKTIEDFGQGVD 99
          ARFLRASFSAFVDVLTLATKTIE+ G GV+
Sbjct: 68 ARFLRASFSAFVDVLTLATKTIEELGPGVE 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023553191.13.9e-4392.93uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo][more]
XP_004146228.12.4e-4088.89PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
KGN57658.12.4e-4088.89hypothetical protein Csa_3G238730 [Cucumis sativus][more]
XP_022141079.13.4e-3986.73uncharacterized protein LOC111011564 [Momordica charantia][more]
XP_022945934.15.8e-3985.86uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 unchar... [more]
Match NameE-valueIdentityDescription
AT5G53045.11.8e-2964.21unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L7A2|A0A0A0L7A2_CUCSA1.6e-4088.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=4 SV=1[more]
tr|A0A1S3CTG0|A0A1S3CTG0_CUCME4.7e-3781.82uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=... [more]
tr|M5X2X8|M5X2X8_PRUPE5.4e-3375.51Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G312900 PE=4 SV=1[more]
tr|A0A1R3IZB8|A0A1R3IZB8_COCAP9.2e-3377.66EKC/KEOPS complex, subunit Pcc1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_086... [more]
tr|A0A1R3JFI5|A0A1R3JFI5_9ROSI6.0e-3280.00EKC/KEOPS complex, subunit Pcc1 OS=Corchorus olitorius OX=93759 GN=COLO4_16787 P... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15058-RACarg15058-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.310.50coord: 7..97
e-value: 3.0E-18
score: 67.5
NoneNo IPR availablePANTHERPTHR31283:SF5GM30016P1coord: 7..97
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 7..97
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 18..91
e-value: 1.1E-19
score: 70.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15058Carg20332Silver-seed gourdcarcarB504