CsGy3G019630 (gene) Cucumber (Gy14) v2

NameCsGy3G019630
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionEKC/KEOPS complex, subunit Pcc1
LocationChr3 : 15808135 .. 15809887 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTAAATAAATAAAATAATTTTAACCATTTTTTCATTTACAATAATGAAATTATAAAAAAAAAACAAAAAACAAATAAACCCTAAAATAATTCTCTCACATCCGAGTCAGTCGTCTTCGTCTTCAACGAGTCACGGTCTCAACTTCTTCCCATTTCTTCCACTGCCACGCCTCAGCCTCGCCGCCGACCATCCTCGCCACGCCTCCTACTACCCGCTGCCGTTACCGGTCAGTTTCAAAGCGCTCTTCATGCTCGTCATACCCTTTCATAAACTCAACCTTCTCTGTATTCTTATCTTTGCTTCATAGGTTTATTTGTGGGAGGAAATCTGGCTGTTTTTCATTAGAATTGAAGCAATGACTCCCACAGCTTCCGTCGCTTCTCATGGAGAGCCCAAATGGGAATTCAGCTGGTTGTTCCCTCTCTCTAAGTCCATAAATGTATAATTATAAGTTTTCCTTTTATTATATGCCATATGCTTTGAAATCGATTTCTTCGTAGATGTCCATGTTAACTTTTCCTCTTTAGCTTTATCTTTAATTAATTCTCCTGTGATTAATCATCTAAGTTCTTTCTCTGGTTCATTGCAATCTCCACAAACAAAATAAGACAATGATAATGATTATCATCTTGTTCTTGCTCTTGTCAACCCTTTGTCTGGTTTTCTTTTCACCCTGAAAGTTCAATTTTTTGTTGCTGAATCATACGGATTTTGTGGCCAAAGCAGTGTCATGAAAGCTTACTGTTTGAATGCCTTAAATTAGTTGTTGGTACTTATGTTATTTATAATTTTGACTCTAGGTTTAGATGAGCGTACTATATGTACAAACTCTCTGCTGTTAGAAGTTGTAATTCGTAATTTGATATTTCTCTCTCATAATAAAAATGTTCTCCTCCTTTGTCCGTTGATTTAAATAACACTATTAGTTAACCTTGTAAATCTCTCTGTCTATTTCTCTGTTGCTTACGTTTTCTGTTTTCTTTGATTGTCAATTGCCACCAAGTTCTCGGTTGTTGGAATGGAGTGGATAACTAGCCAAATCTCTCTTCTTTTGCTGTTGTTTTTGGAAGCCAAATTTGATTTTTCAGTCTTGTTAGCGTTCAGCAATTGCTACTTGTTTCTAAAACGGTCATCGCTTCTTTCCTTAAATAACCAACTGTTTTTTTATCATACATCGGAAACATGCAGTTCAACTCATTGTTAGCGATCTTTCATCTATTCTATATTGCCTTCATAAAGACATGGTTTGCCCTCTGCAGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAGTCGTTGATAAAGAGGTGCTTCTCGATGATATCAATCTTCACCTTGTTCCTCCAGAGTTAACTTGTTTCTGATTCGATTTGTGTGCTATGAACAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAAATTCTGATGGAAAACTTTCAATGTGAGCCTCTTTTTTGGTCCTTGCATTCATAGTTTTTAATGTACTTAGAGCTTAGTAATGCTATTGCATTCTATCATATTTTGTAGACATTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGAGGATTTCTGATAGCCTTACTGACCTATTTACATGGCTCTCAAATATCAAGTGTCATTTTTTTTTTTTTTTTTTGCTTAAAGTAGCTCTGGTTT

mRNA sequence

CGTAAATAAATAAAATAATTTTAACCATTTTTTCATTTACAATAATGAAATTATAAAAAAAAAACAAAAAACAAATAAACCCTAAAATAATTCTCTCACATCCGAGTCAGTCGTCTTCGTCTTCAACGAGTCACGGTCTCAACTTCTTCCCATTTCTTCCACTGCCACGCCTCAGCCTCGCCGCCGACCATCCTCGCCACGCCTCCTACTACCCGCTGCCGTTACCGGTTTATTTGTGGGAGGAAATCTGGCTGTTTTTCATTAGAATTGAAGCAATGACTCCCACAGCTTCCGTCGCTTCTCATGGAGAGCCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAGTCGTTGATAAAGAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAAATTCTGATGGAAAACTTTCAATACATTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGAGGATTTCTGATAGCCTTACTGACCTATTTACATGGCTCTCAAATATCAAGTGTCATTTTTTTTTTTTTTTTTTGCTTAAAGTAGCTCTGGTTT

Coding sequence (CDS)

ATGACTCCCACAGCTTCCGTCGCTTCTCATGGAGAGCCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAGTCGTTGATAAAGAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAAATTCTGATGGAAAACTTTCAATACATTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGAGGATTTCTGA

Protein sequence

MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF
BLAST of CsGy3G019630 vs. NCBI nr
Match: XP_004146228.1 (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 4.5e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

BLAST of CsGy3G019630 vs. NCBI nr
Match: KGN57658.1 (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 4.5e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of CsGy3G019630 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           M PT SVAS GEP WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ  DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

BLAST of CsGy3G019630 vs. NCBI nr
Match: XP_008466840.1 (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-40
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVAS GE KWEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKRAMS S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG E +F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of CsGy3G019630 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = 0

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           M PTASVAS GE KWEF CDFEVDYESEKKASIVY AL VDKELQPDKVKR M+ SDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEED 99
           S+HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ  D
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

BLAST of CsGy3G019630 vs. TAIR10
Match: AT5G53045.1 (unknown protein)

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-29
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 0

Query: 1  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
          M  T    +  +  W+FSC+ +V +ESE+ A I Y +L VDKELQPDKV+R MS S+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          S+HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ+
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQK 96

BLAST of CsGy3G019630 vs. TrEMBL
Match: tr|A0A0A0L7A2|A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of CsGy3G019630 vs. TrEMBL
Match: tr|A0A1S3CTG0|A0A1S3CTG0_CUCME (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVAS GE KWEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKRAMS S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG E +F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of CsGy3G019630 vs. TrEMBL
Match: tr|V7CVI7|V7CVI7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G057400g PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.2e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 0

Query: 5  ASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHF 64
          AS   H +P+WEFSCD E+D+ SE+ ASIVY AL VDKELQPDKVKR MS SDGKLS+HF
Sbjct: 2  ASTTPHSQPQWEFSCDMEMDFGSEENASIVYTALAVDKELQPDKVKRGMSVSDGKLSVHF 61

Query: 65 EAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          EA EARFLRASFSAFVDVLTLATKTIE+FGQE
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEEFGQE 93

BLAST of CsGy3G019630 vs. TrEMBL
Match: tr|A0A0S3RNZ4|A0A0S3RNZ4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G224000 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.0e-32
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 0

Query: 5  ASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHF 64
          AS   H +P+WEFSCD E+D+ SE+ ASIVY AL VDKELQPDKVKR M+ SDGKLS+HF
Sbjct: 2  ASTTPHDQPQWEFSCDMELDFGSEEHASIVYAALAVDKELQPDKVKRGMTVSDGKLSVHF 61

Query: 65 EAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          EA EARFLRASFSAFVDVLTLATKTIE FGQE
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEQFGQE 93

BLAST of CsGy3G019630 vs. TrEMBL
Match: tr|M5X2X8|M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G312900 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-31
Identity = 73/95 (76.84%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
          M   AS  + G+ +WEFSCD EVDYESE+ ASIVY AL VDKELQPDKVKR MS S+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
          S+HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004146228.14.5e-47100.00PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
KGN57658.14.5e-47100.00hypothetical protein Csa_3G238730 [Cucumis sativus][more]
XP_023553191.11.4e-4090.91uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo][more]
XP_008466840.12.4e-4089.90PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 P... [more]
XP_022141079.11.7e-3887.76uncharacterized protein LOC111011564 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT5G53045.16.7e-2961.46unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L7A2|A0A0A0L7A2_CUCSA2.9e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=4 SV=1[more]
tr|A0A1S3CTG0|A0A1S3CTG0_CUCME1.6e-4089.90uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=... [more]
tr|V7CVI7|V7CVI7_PHAVU9.2e-3379.35Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G057400g PE=4 ... [more]
tr|A0A0S3RNZ4|A0A0S3RNZ4_PHAAN6.0e-3278.26Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G... [more]
tr|M5X2X8|M5X2X8_PRUPE1.0e-3176.84Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G312900 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019630.1CsGy3G019630.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 18..91
e-value: 1.9E-18
score: 66.3
NoneNo IPR availableGENE3DG3DSA:3.30.310.50coord: 7..98
e-value: 2.3E-18
score: 67.9
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 5..96
NoneNo IPR availablePANTHERPTHR31283:SF5GM30016P1coord: 5..96

The following gene(s) are paralogous to this gene:

None