Carg20332 (gene) Silver-seed gourd

NameCarg20332
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEKC/KEOPS complex, subunit Pcc1
LocationCucurbita_argyrosperma_scaffold_178 : 116158 .. 117294 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGGTTCCTCTCTCTCTCTCTAAGCCCATAAATGCATAGATACAAGTTTTCCTTTGATAGTATGGCATGCTTTTAGATCAGTTTGTTTATTATCGTTGCTACGTTAGCATTTTGGTGAGCTTCGCGTCTTTAGTCTAATCTTATTTCTCATTTGATTAATCCGTTCTGTTTTTTTTTTCTCTGGTTCCTTGCAATTTCCATATTCAAAATAAGACAATGATAATGATGATGATGATCATGTTCTTGTGCCTGGCAAGTGGCAACCCATTTTTCCTTTGTTGCTGAACCCGAAGTTTTGCGAGTAAAATAGTGTCATGAAAGCTCAAATATGCAAAGCTTTCTTCTTTTGCTATGGTTCCTAGAACCCAATGTTGTTTCCTTTCTGGGTGTTGTTAGTGTTTAACAATTGCTATTTGTTCCTAAGTGGTCATTGCGCTTGCTTCTTTCTTTAAGGGTCAACATTTATGTTGGAAACATGCAGTTTAACTCATCTTTTGCTATCTGCAGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGGTGCTTCTCGATTATTTCAACCTTCGCATTGTGCTCCCTAGTGGACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTGTGAGCCTATTATGCTCTTGGCATTCCTCATTAATAATACATGGATATCATAATAGCTTAATACAGAATTCTTGGGAACATTCACAATTCTCTTCAATCATTTTTTAGAATTTTCATTAGCTGTCTGACATGTTTCATGCAGACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATAGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACATCTGATCTCCAATTTTGTTACAATATGATTTGA

mRNA sequence

GAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATAGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACATCTGATCTCCAATTTTGTTACAATATGATTTGA

Coding sequence (CDS)

ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA

Protein sequence

MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
BLAST of Carg20332 vs. NCBI nr
Match: XP_022945934.1 (uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 uncharacterized protein LOC111801345 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.4 bits (498), Expect = 4.5e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
Sbjct: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

BLAST of Carg20332 vs. NCBI nr
Match: XP_022968168.1 (uncharacterized protein LOC111467483 isoform X2 [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 3.2e-45
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKR MTVSDGKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           SVHFEAVEARFLRAS SAFLDVLTLAIKTIEDFGQGLDF
Sbjct: 61  SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF 99

BLAST of Carg20332 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-41
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           MAPTASV SDG+AKWEF CDFEVD ESEKKASIVYNAL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
           SVHFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQGLD
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

BLAST of Carg20332 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PT SV SDG+  WEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQG+DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

BLAST of Carg20332 vs. NCBI nr
Match: XP_008466840.1 (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 4.9e-38
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 0

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of Carg20332 vs. TAIR10
Match: AT5G53045.1 (unknown protein)

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-28
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA T    +  D  W+FSC+ +V  ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQ 96
          SVHFEA+EAR LRAS+SAF+DVLTLA +TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A1S3CTG0|A0A1S3CTG0_CUCME (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.3e-38
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 0

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A0A0L7A2|A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-37
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PTASV S G+ KWEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of Carg20332 vs. TrEMBL
Match: tr|M5X2X8|M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G312900 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-33
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 0

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA  AS  +DG  +WEFSCD EVD ESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRASYSAF+DVLTLA KTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A2P5E6Y8|A0A2P5E6Y8_9ROSA (CTAG/Pcc1 family OS=Trema orientalis OX=63057 GN=TorRG33x02_229900 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.8e-32
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 0

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA  A  V+DG  +WEFSCD EVD ESE+ ASIVY AL VDKELQPDKVKR M+VSDGKL
Sbjct: 1  MAAIAYNVADGPNQWEFSCDLEVDYESEENASIVYAALAVDKELQPDKVKRHMSVSDGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRASYSAF+DVL LA KTIE+ G+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLILATKTIEELGKGME 98

BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A1R3IZB8|A0A1R3IZB8_COCAP (EKC/KEOPS complex, subunit Pcc1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_08655 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-31
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 0

Query: 9   SDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVE 68
           SD   +WEFSCD EVD ESE+KASIVY+AL VDKELQPDKVKREM++SDGKLSVHFEAVE
Sbjct: 335 SDAPNQWEFSCDLEVDFESEEKASIVYSALAVDKELQPDKVKREMSISDGKLSVHFEAVE 394

Query: 69  ARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
           ARFLRAS+SAF+DVLTLA KTIE+ G G++
Sbjct: 395 ARFLRASFSAFVDVLTLATKTIEELGPGME 424

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022945934.14.5e-47100.00uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 unchar... [more]
XP_022968168.13.2e-4597.98uncharacterized protein LOC111467483 isoform X2 [Cucurbita maxima][more]
XP_022141079.12.8e-4190.82uncharacterized protein LOC111011564 [Momordica charantia][more]
XP_023553191.15.3e-4086.87uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo][more]
XP_008466840.14.9e-3881.82PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 P... [more]
Match NameE-valueIdentityDescription
AT5G53045.14.3e-2862.11unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CTG0|A0A1S3CTG0_CUCME3.3e-3881.82uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=... [more]
tr|A0A0A0L7A2|A0A0A0L7A2_CUCSA2.8e-3783.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=4 SV=1[more]
tr|M5X2X8|M5X2X8_PRUPE2.4e-3376.53Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G312900 PE=4 SV=1[more]
tr|A0A2P5E6Y8|A0A2P5E6Y8_9ROSA7.8e-3275.51CTAG/Pcc1 family OS=Trema orientalis OX=63057 GN=TorRG33x02_229900 PE=4 SV=1[more]
tr|A0A1R3IZB8|A0A1R3IZB8_COCAP1.7e-3178.89EKC/KEOPS complex, subunit Pcc1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_086... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20332-RACarg20332-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.310.50coord: 7..97
e-value: 8.4E-20
score: 72.5
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 8..96
NoneNo IPR availablePANTHERPTHR31283:SF5GM30016P1coord: 8..96
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 18..91
e-value: 2.2E-20
score: 72.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20332Carg15058Silver-seed gourdcarcarB504
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20332Cucurbita maxima (Rimu)carcmaB0753
Carg20332Silver-seed gourdcarcarB490
Carg20332Silver-seed gourdcarcarB503
Carg20332Cucumber (Gy14) v2carcgybB0543
Carg20332Cucumber (Gy14) v2carcgybB0546
Carg20332Cucumber (Gy14) v1carcgyB0615
Carg20332Cucumber (Gy14) v1carcgyB0617
Carg20332Cucurbita maxima (Rimu)carcmaB0752
Carg20332Cucurbita maxima (Rimu)carcmaB0751
Carg20332Cucurbita maxima (Rimu)carcmaB0756
Carg20332Cucurbita moschata (Rifu)carcmoB0729
Carg20332Cucurbita moschata (Rifu)carcmoB0731
Carg20332Cucurbita moschata (Rifu)carcmoB0734
Carg20332Cucurbita pepo (Zucchini)carcpeB0760
Carg20332Cucurbita pepo (Zucchini)carcpeB0762
Carg20332Cucurbita pepo (Zucchini)carcpeB0765
Carg20332Wild cucumber (PI 183967)carcpiB0573
Carg20332Wild cucumber (PI 183967)carcpiB0576
Carg20332Cucumber (Chinese Long) v2carcuB0567
Carg20332Cucumber (Chinese Long) v2carcuB0570
Carg20332Cucumber (Chinese Long) v3carcucB0574
Carg20332Cucumber (Chinese Long) v3carcucB0577
Carg20332Bottle gourd (USVL1VR-Ls)carlsiB487
Carg20332Bottle gourd (USVL1VR-Ls)carlsiB490
Carg20332Melon (DHL92) v3.5.1carmeB0542
Carg20332Melon (DHL92) v3.5.1carmeB0546
Carg20332Melon (DHL92) v3.6.1carmedB0547
Carg20332Melon (DHL92) v3.6.1carmedB0552
Carg20332Watermelon (Charleston Gray)carwcgB0522
Carg20332Watermelon (Charleston Gray)carwcgB0524
Carg20332Watermelon (97103) v1carwmB0536
Carg20332Watermelon (97103) v1carwmB0537
Carg20332Watermelon (97103) v2carwmbB0566
Carg20332Watermelon (97103) v2carwmbB0563
Carg20332Wax gourdcarwgoB0647
Carg20332Wax gourdcarwgoB0649