Carg20332 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGGTTCCTCTCTCTCTCTCTAAGCCCATAAATGCATAGATACAAGTTTTCCTTTGATAGTATGGCATGCTTTTAGATCAGTTTGTTTATTATCGTTGCTACGTTAGCATTTTGGTGAGCTTCGCGTCTTTAGTCTAATCTTATTTCTCATTTGATTAATCCGTTCTGTTTTTTTTTTCTCTGGTTCCTTGCAATTTCCATATTCAAAATAAGACAATGATAATGATGATGATGATCATGTTCTTGTGCCTGGCAAGTGGCAACCCATTTTTCCTTTGTTGCTGAACCCGAAGTTTTGCGAGTAAAATAGTGTCATGAAAGCTCAAATATGCAAAGCTTTCTTCTTTTGCTATGGTTCCTAGAACCCAATGTTGTTTCCTTTCTGGGTGTTGTTAGTGTTTAACAATTGCTATTTGTTCCTAAGTGGTCATTGCGCTTGCTTCTTTCTTTAAGGGTCAACATTTATGTTGGAAACATGCAGTTTAACTCATCTTTTGCTATCTGCAGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGGTGCTTCTCGATTATTTCAACCTTCGCATTGTGCTCCCTAGTGGACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTGTGAGCCTATTATGCTCTTGGCATTCCTCATTAATAATACATGGATATCATAATAGCTTAATACAGAATTCTTGGGAACATTCACAATTCTCTTCAATCATTTTTTAGAATTTTCATTAGCTGTCTGACATGTTTCATGCAGACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATAGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACATCTGATCTCCAATTTTGTTACAATATGATTTGA GAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATAGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACATCTGATCTCCAATTTTGTTACAATATGATTTGA ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
BLAST of Carg20332 vs. NCBI nr
Match: XP_022945934.1 (uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 uncharacterized protein LOC111801345 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 196.4 bits (498), Expect = 4.5e-47 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of Carg20332 vs. NCBI nr
Match: XP_022968168.1 (uncharacterized protein LOC111467483 isoform X2 [Cucurbita maxima]) HSP 1 Score: 190.3 bits (482), Expect = 3.2e-45 Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0
BLAST of Carg20332 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia]) HSP 1 Score: 177.2 bits (448), Expect = 2.8e-41 Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0
BLAST of Carg20332 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40 Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Carg20332 vs. NCBI nr
Match: XP_008466840.1 (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo]) HSP 1 Score: 166.4 bits (420), Expect = 4.9e-38 Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of Carg20332 vs. TAIR10
Match: AT5G53045.1 (unknown protein) HSP 1 Score: 120.9 bits (302), Expect = 4.3e-28 Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0
BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A1S3CTG0|A0A1S3CTG0_CUCME (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 3.3e-38 Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A0A0L7A2|A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=4 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 2.8e-37 Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0
BLAST of Carg20332 vs. TrEMBL
Match: tr|M5X2X8|M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G312900 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 2.4e-33 Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 0
BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A2P5E6Y8|A0A2P5E6Y8_9ROSA (CTAG/Pcc1 family OS=Trema orientalis OX=63057 GN=TorRG33x02_229900 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 7.8e-32 Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 0
BLAST of Carg20332 vs. TrEMBL
Match: tr|A0A1R3IZB8|A0A1R3IZB8_COCAP (EKC/KEOPS complex, subunit Pcc1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_08655 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.7e-31 Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |