Cp4.1LG09g00250 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG09g00250
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor Pcc1
LocationCp4.1LG09 : 119382 .. 120633 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCGTGCCGCCTGTTATGTTAGGTTTAGCGAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGGTTCCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTAAGCCCATAAATGCATAGATACAAGTTTTCCTTTAGATCAGTTTGTTTATTATCGTTGCTATGTTAGCATTCTGGTGAGCTTCGCGTCTTTAGTTTAATCTTATTTCTCATTTGATTAATCCGTTTTGTTTTTTTCTCTGGTTCCTTGCAATTTCCATATTCAAAATAAGACAATGATAATGGCAACCCATTTTTCTTTTGTTGCTGAACCCGAAGTTTTGCGAGTAAAATAGTGTCATGAAAGCTCAAATATGCAAAGGTTTCTTCTTTTGCTATGGTTCCTAGAACCCAATGTTGTTTCCTTTCTGGGTGTTGTTAGTGTTTAACAATTGCTATTTGTTCCTAAGTGGTCATTGCGCTTGCTTCTTTCTTTAAATGGTCAACATTTATGTTGGAAACATGCAGTTTAACTCATTGTTTGCTATCTGCAGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGGTGCTTCTCGATTATTTCAACCTTCGCATTGTGCTCCCTAGTGGACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTGTGAGCCTATTATGCTCTTGGCATTCCTCATTAATAATACATGGATACCAAAATAGCTTAATACAGAATTCTTGGGAACATTCACAATTCTCCGCAATCATTTTTTAGAATTCTCATTAGCTGTCTGACTTGTTTCATGCAGACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATTGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACATCTGATCTCCAATTTTGTTACAATATGATTTGTAGTGGTTTGATCCATGGTGAAGAACCACATCCTACATCCATCATTCGAACATTGAGATCCAACAATATAACATTTTCAATACCATATTACTCATTACATAATATATTATTTCTTTTGAAT

mRNA sequence

CGCCGTGCCGCCTGTTATGTTAGGTTTAGCGAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATTGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACATCTGATCTCCAATTTTGTTACAATATGATTTGTAGTGGTTTGATCCATGGTGAAGAACCACATCCTACATCCATCATTCGAACATTGAGATCCAACAATATAACATTTTCAATACCATATTACTCATTACATAATATATTATTTCTTTTGAAT

Coding sequence (CDS)

ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA

Protein sequence

MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
BLAST of Cp4.1LG09g00250 vs. TrEMBL
Match: A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-37
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PTASV S G+ KWEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of Cp4.1LG09g00250 vs. TrEMBL
Match: M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-33
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA  AS  +DG  +WEFSCD EVD ESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRASYSAF+DVLTLA KTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of Cp4.1LG09g00250 vs. TrEMBL
Match: A0A061G2H6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015432 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 1

Query: 6  SVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFE 65
          S +SD   +WEFSCD EVD ESE+ ASIVY ALVVDKELQPDKVKR+M++SDGKLSVHFE
Sbjct: 5  SELSDTPNQWEFSCDLEVDLESEENASIVYAALVVDKELQPDKVKRQMSISDGKLSVHFE 64

Query: 66 AVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
          AVEARFLRAS+SAF+DVL LA KTIE+ G G++
Sbjct: 65 AVEARFLRASFSAFVDVLILATKTIEELGPGME 97

BLAST of Cp4.1LG09g00250 vs. TrEMBL
Match: W9SR14_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011869 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-30
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 5   ASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHF 64
           ASVV D   KWEFSCD EVD +S++ +SIV+ AL VDKELQPDKVKREMTVS+GKLSVHF
Sbjct: 383 ASVVPD---KWEFSCDLEVDYQSDENSSIVFAALAVDKELQPDKVKREMTVSNGKLSVHF 442

Query: 65  EAVEARFLRASYSAFLDVLTLAIKTIEDFGQGL 98
           EAVEARFLRASYSAF+DVL LA KTIE+FG+G+
Sbjct: 443 EAVEARFLRASYSAFVDVLILATKTIEEFGKGM 472

BLAST of Cp4.1LG09g00250 vs. TrEMBL
Match: B9I1X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02410g PE=4 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-30
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 1

Query: 2   APTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLS 61
           A  A+  +  DA+W+FSCDFEVD  SE+ ASIVY AL VDKELQPDKVKR M+VS+GKLS
Sbjct: 36  AAAAAAAAAMDAQWDFSCDFEVDFGSEENASIVYAALAVDKELQPDKVKRLMSVSNGKLS 95

Query: 62  VHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGL 98
           VHFEAVEARFLRAS+SAF+DVLTL  KTIE+FG+G+
Sbjct: 96  VHFEAVEARFLRASFSAFVDVLTLTTKTIEEFGKGM 131

BLAST of Cp4.1LG09g00250 vs. TAIR10
Match: AT5G53045.1 (AT5G53045.1 unknown protein)

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-28
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA T    +  D  W+FSC+ +V  ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQ 96
          SVHFEA+EAR LRAS+SAF+DVLTLA +TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

BLAST of Cp4.1LG09g00250 vs. NCBI nr
Match: gi|659133652|ref|XP_008466840.1| (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-38
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of Cp4.1LG09g00250 vs. NCBI nr
Match: gi|449456983|ref|XP_004146228.1| (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-37
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PTASV S G+ KWEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKR M+ SDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQ  DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

BLAST of Cp4.1LG09g00250 vs. NCBI nr
Match: gi|700202525|gb|KGN57658.1| (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-37
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
           M PTASV S G+ KWEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of Cp4.1LG09g00250 vs. NCBI nr
Match: gi|470144659|ref|XP_004307966.1| (PREDICTED: uncharacterized protein LOC101306760 [Fragaria vesca subsp. vesca])

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA  AS  +DG  +WEFSCD EVD ESE+ ASIVYN L VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAMASDKADGQTQWEFSCDMEVDYESEEIASIVYNTLAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRASYSAF+DVLTLA KTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of Cp4.1LG09g00250 vs. NCBI nr
Match: gi|596012112|ref|XP_007218647.1| (hypothetical protein PRUPE_ppa013862mg [Prunus persica])

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60
          MA  AS  +DG  +WEFSCD EVD ESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRASYSAF+DVLTLA KTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7A2_CUCSA1.5e-3783.84Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1[more]
M5X2X8_PRUPE1.3e-3376.53Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1[more]
A0A061G2H6_THECC1.4e-3075.27Uncharacterized protein OS=Theobroma cacao GN=TCM_015432 PE=4 SV=1[more]
W9SR14_9ROSA2.3e-3077.42Uncharacterized protein OS=Morus notabilis GN=L484_011869 PE=4 SV=1[more]
B9I1X5_POPTR4.0e-3072.92Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02410g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT5G53045.14.3e-2862.11 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659133652|ref|XP_008466840.1|2.5e-3881.82PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo][more]
gi|449456983|ref|XP_004146228.1|2.2e-3783.84PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
gi|700202525|gb|KGN57658.1|2.2e-3783.84hypothetical protein Csa_3G238730 [Cucumis sativus][more]
gi|470144659|ref|XP_004307966.1|1.9e-3376.53PREDICTED: uncharacterized protein LOC101306760 [Fragaria vesca subsp. vesca][more]
gi|596012112|ref|XP_007218647.1|1.9e-3376.53hypothetical protein PRUPE_ppa013862mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g00250.1Cp4.1LG09g00250.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 18..91
score: 2.1
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 15..94
score: 1.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g00250Cp4.1LG14g06860Cucurbita pepo (Zucchini)cpecpeB024
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g00250Cucumber (Chinese Long) v3cpecucB0036
Cp4.1LG09g00250Cucumber (Chinese Long) v3cpecucB0046
Cp4.1LG09g00250Wax gourdcpewgoB0021
Cp4.1LG09g00250Wax gourdcpewgoB0028
Cp4.1LG09g00250Cucurbita pepo (Zucchini)cpecpeB021
Cp4.1LG09g00250Cucurbita pepo (Zucchini)cpecpeB023
Cp4.1LG09g00250Cucurbita pepo (Zucchini)cpecpeB057
Cp4.1LG09g00250Cucumber (Gy14) v1cgycpeB0004
Cp4.1LG09g00250Cucumber (Gy14) v1cgycpeB0570
Cp4.1LG09g00250Cucurbita maxima (Rimu)cmacpeB301
Cp4.1LG09g00250Cucurbita maxima (Rimu)cmacpeB339
Cp4.1LG09g00250Cucurbita maxima (Rimu)cmacpeB340
Cp4.1LG09g00250Cucurbita maxima (Rimu)cmacpeB598
Cp4.1LG09g00250Cucurbita moschata (Rifu)cmocpeB264
Cp4.1LG09g00250Cucurbita moschata (Rifu)cmocpeB303
Cp4.1LG09g00250Cucurbita moschata (Rifu)cmocpeB546
Cp4.1LG09g00250Wild cucumber (PI 183967)cpecpiB032
Cp4.1LG09g00250Wild cucumber (PI 183967)cpecpiB038
Cp4.1LG09g00250Cucumber (Chinese Long) v2cpecuB036
Cp4.1LG09g00250Cucumber (Chinese Long) v2cpecuB043
Cp4.1LG09g00250Bottle gourd (USVL1VR-Ls)cpelsiB019
Cp4.1LG09g00250Bottle gourd (USVL1VR-Ls)cpelsiB037
Cp4.1LG09g00250Watermelon (Charleston Gray)cpewcgB022
Cp4.1LG09g00250Watermelon (Charleston Gray)cpewcgB046
Cp4.1LG09g00250Watermelon (97103) v1cpewmB032
Cp4.1LG09g00250Watermelon (97103) v1cpewmB035
Cp4.1LG09g00250Melon (DHL92) v3.5.1cpemeB017
Cp4.1LG09g00250Melon (DHL92) v3.5.1cpemeB043
Cp4.1LG09g00250Cucumber (Gy14) v2cgybcpeB285
Cp4.1LG09g00250Cucumber (Gy14) v2cgybcpeB583
Cp4.1LG09g00250Melon (DHL92) v3.6.1cpemedB020
Cp4.1LG09g00250Melon (DHL92) v3.6.1cpemedB051
Cp4.1LG09g00250Silver-seed gourdcarcpeB0712
Cp4.1LG09g00250Silver-seed gourdcarcpeB1373