CSPI03G19710 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G19710
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTranscription factor Pcc1
LocationChr3 : 15432631 .. 15434276 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAAAATAAATAAATAAACCCTAAAATAATTCTCTCACATCCGAGTCAGTCGTCTTCGTCTTCAACGAGTCACGGTCTCAACTTCTTCCCATTTCTTCCACTGCCACGCCTCAGCCTCGCCGCCGACCATCCTCGCCACGCCTCCTACTACCCGCTGCCGTTACCGGTCAGTTTCAAAGCGCTCTTCATGCTCGTCAAACCCTTTCATAAACTCAACCTTCTCTGTATTCTTATCTTTGCTTCATAGGTTTATTTGTGGGGGGAAATCTGGCTGTTTTTCATTAGAATTGAAGCAATGACTCCCACAGCTTCCGTCGCTTCTCATGGAGAGCCCAAATGGGAATTCAGCTGGTTGTTCTCTCTCTCTAACTCCATAAATGTATAATTATAAGTTTTCCTTTTATTATATGCCATATGCTTTGAAATCGATTTCTTCGTAGATGTCCATGTTAACTTTTCCTCTTTAGCTTTATCTTTAATTAATTCTCCTGTGATTAATCATCTAAGTTCTTTCTCTAATAAGACAATGATAATGATTATCATCTTGTTCTTGCTCTTGTCAACCCTTTGTCTGGTTTTCTTTTCACCCTGAAAGTTCAATTTTTTGTTGCTGAATCATACGGATTTTGTGGCCAAAGCAGTGTCATGAAAGCTTACTGTTTGAATGCCTTAAATTAGTTGTTGGTACTTATGTTATTTATAATTTTGACTCTAGGTTTAGATGAGCGTACTATATGTACAAACTCTCTGCTGTTAGAAGTTGTAATTCGTAATTTGATATTTCTCTCTCATAATAAAAGTGTTCTCCTCCTTTGTCCGTTGATTTAAATAACACTATTAGTTAACCTTGTAAATCTCTCTGTCTATTTCTCTGTTTCTTACGTTTTCTGTTTTCTTTGATTGTCAATTGCCACCAAGTTCTCGGTTGTTGGAATGGAGTGGATAACTAGCCAAATCTCTGTTCTTTTGCTGTTGTTTTTGGAAGCCAAATTTGATTTTTCAGTCTTGTTAGCGTTCAGCAATTGCTACTTGTTTCTAAAACGGTCATCGCTTCTTTCCTTAAATAACCAACTGTTTTTTTTATCATACATCGGAAACATGCAGTTCAACTCATTGTTAGCGATCTTTCATCTATTCTATATTGCCTTCATAAAGACATGGTTTGCCCTCTGCAGTGACTTTGAAGTCGATTACGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAGTAGTTGATAAAGAGGTGCTTCTCGATGATATCAATCTTCACCTTGTTCCTCCAGAGTTAACTTGTTTCTGATTCGATTTGTGTGCTATGAACAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAAATTCTGATGGAAAACTTTCAATGTGAGCCTCTTTTTTGGTCCTTGCATTCATAGTTTTTAATGTACTTACAGCTTAGTAATGCTATTGCATTCTATCATATTTTGTAGACATTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGAGGATTTCTGATAGCCTTACTGACCTATTTACATGGCTCTCAAATATCAAGTGTCATTTTTTTTTTTTTTT

mRNA sequence

ATGACTCCCACAGCTTCCGTCGCTTCTCATGGAGAGCCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTACGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAGTAGTTGATAAAGAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAAATTCTGATGGAAAACTTTCAATACATTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGAGGATTTCTGA

Coding sequence (CDS)

ATGACTCCCACAGCTTCCGTCGCTTCTCATGGAGAGCCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTACGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAGTAGTTGATAAAGAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAAATTCTGATGGAAAACTTTCAATACATTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGAGGATTTCTGA
Homology
[Close]
BLAST of CSPI03G19710 vs. TrEMBL
Match: A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.2e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

[Close]
BLAST of CSPI03G19710 vs. TrEMBL
Match: V7CVI7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G057400g PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 1 

Query: 5  ASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHF 64
          AS   H +P+WEFSCD E+D+ SE+ ASIVY AL VDKELQPDKVKR MS SDGKLS+HF
Sbjct: 2  ASTTPHSQPQWEFSCDMEMDFGSEENASIVYTALAVDKELQPDKVKRGMSVSDGKLSVHF 61

Query: 65 EAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          EA EARFLRASFSAFVDVLTLATKTIE+FGQE
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEEFGQE 93

[Close]
BLAST of CSPI03G19710 vs. TrEMBL
Match: A0A0S3RNZ4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G224000 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-32
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 5  ASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHF 64
          AS   H +P+WEFSCD E+D+ SE+ ASIVY AL VDKELQPDKVKR M+ SDGKLS+HF
Sbjct: 2  ASTTPHDQPQWEFSCDMELDFGSEEHASIVYAALAVDKELQPDKVKRGMTVSDGKLSVHF 61

Query: 65 EAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          EA EARFLRASFSAFVDVLTLATKTIE FGQE
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEQFGQE 93

[Close]
BLAST of CSPI03G19710 vs. TrEMBL
Match: M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.3e-32
Identity = 73/95 (76.84%), Postives = 82/95 (86.32%), Query Frame = 1 

Query: 1  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
          M   AS  + G+ +WEFSCD EVDYESE+ ASIVY AL VDKELQPDKVKR MS S+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
          S+HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGK 95

[Close]
BLAST of CSPI03G19710 vs. TrEMBL
Match: A0A124SFY0_CYNCS (EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_017027 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-30
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 15  WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHFEAVEARFLRA 74
           WEFSCD EVDY+SE+KA IVY AL VDKELQPDKV+R MS SDGKLS+HFEAVEARFLRA
Sbjct: 20  WEFSCDLEVDYKSEEKAGIVYSALAVDKELQPDKVRRLMSISDGKLSVHFEAVEARFLRA 79

Query: 75  SFSAFVDVLTLATKTIEDFGQ 96
           SFSAFVDVLTLATKTIE FG+
Sbjct: 80  SFSAFVDVLTLATKTIEQFGE 100

[Close]
BLAST of CSPI03G19710 vs. TAIR10
Match: AT5G53045.1 (AT5G53045.1 unknown protein)

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-29
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1 

Query: 1  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
          M  T    +  +  W+FSC+ +V +ESE+ A I Y +L VDKELQPDKV+R MS S+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          S+HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ+
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQK 96

[Close]
BLAST of CSPI03G19710 vs. NCBI nr
Match: gi|449456983|ref|XP_004146228.1| (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

[Close]
BLAST of CSPI03G19710 vs. NCBI nr
Match: gi|700202525|gb|KGN57658.1| (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

[Close]
BLAST of CSPI03G19710 vs. NCBI nr
Match: gi|659133652|ref|XP_008466840.1| (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 5.5e-41
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 1 

Query: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60
           MTPTASVAS GE KWEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKRAMS S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 100
           SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG E +F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]
BLAST of CSPI03G19710 vs. NCBI nr
Match: gi|593796496|ref|XP_007161286.1| (hypothetical protein PHAVU_001G057400g [Phaseolus vulgaris])

HSP 1 Score: 148.7 bits (374), Expect = 5.5e-33
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 1 

Query: 5  ASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHF 64
          AS   H +P+WEFSCD E+D+ SE+ ASIVY AL VDKELQPDKVKR MS SDGKLS+HF
Sbjct: 2  ASTTPHSQPQWEFSCDMEMDFGSEENASIVYTALAVDKELQPDKVKRGMSVSDGKLSVHF 61

Query: 65 EAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          EA EARFLRASFSAFVDVLTLATKTIE+FGQE
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEEFGQE 93

[Close]
BLAST of CSPI03G19710 vs. NCBI nr
Match: gi|965666769|dbj|BAT82257.1| (hypothetical protein VIGAN_03224000 [Vigna angularis var. angularis])

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-32
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 5  ASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKLSIHF 64
          AS   H +P+WEFSCD E+D+ SE+ ASIVY AL VDKELQPDKVKR M+ SDGKLS+HF
Sbjct: 2  ASTTPHDQPQWEFSCDMELDFGSEEHASIVYAALAVDKELQPDKVKRGMTVSDGKLSVHF 61

Query: 65 EAVEARFLRASFSAFVDVLTLATKTIEDFGQE 97
          EA EARFLRASFSAFVDVLTLATKTIE FGQE
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEQFGQE 93

The following BLAST results are available for this feature:
BLAST of CSPI03G19710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G19710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7A2_CUCSA7.2e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1[more]
V7CVI7_PHAVU3.9e-3379.35Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G057400g PE=4 SV=1[more]
A0A0S3RNZ4_PHAAN2.5e-3278.26Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G224000 PE=... [more]
M5X2X8_PRUPE3.3e-3276.84Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1[more]
A0A124SFY0_CYNCS1.8e-3085.19EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_0170... [more]
BLAST of CSPI03G19710 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53045.13.9e-2961.46 unknown protein[more]
BLAST of CSPI03G19710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456983|ref|XP_004146228.1|1.0e-47100.00PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
gi|700202525|gb|KGN57658.1|1.0e-47100.00hypothetical protein Csa_3G238730 [Cucumis sativus][more]
gi|659133652|ref|XP_008466840.1|5.5e-4189.90PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo][more]
gi|593796496|ref|XP_007161286.1|5.5e-3379.35hypothetical protein PHAVU_001G057400g [Phaseolus vulgaris][more]
gi|965666769|dbj|BAT82257.1|3.6e-3278.26hypothetical protein VIGAN_03224000 [Vigna angularis var. angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
IPR015419CTAG/Pcc1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19710.1CSPI03G19710.1mRNA
CSPI03G19710.2CSPI03G19710.2mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 18..91
score: 1.8
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 15..94
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G19710Cla004265Watermelon (97103) v1cpiwmB242
CSPI03G19710Csa3G238730Cucumber (Chinese Long) v2cpicuB120
CSPI03G19710MELO3C008504Melon (DHL92) v3.5.1cpimeB241
CSPI03G19710ClCG05G009020Watermelon (Charleston Gray)cpiwcgB237
CSPI03G19710Lsi05G001100Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G19710MELO3C008504.2Melon (DHL92) v3.6.1cpimedB239
CSPI03G19710CsaV3_3G019760Cucumber (Chinese Long) v3cpicucB144
CSPI03G19710Cla97C05G091340Watermelon (97103) v2cpiwmbB221
CSPI03G19710Bhi01G001125Wax gourdcpiwgoB283
CSPI03G19710Cucsa.032250Cucumber (Gy14) v1cgycpiB003
CSPI03G19710CmaCh18G013240Cucurbita maxima (Rimu)cmacpiB414
CSPI03G19710CmoCh16G000470Cucurbita moschata (Rifu)cmocpiB318
CSPI03G19710CmoCh18G013540Cucurbita moschata (Rifu)cmocpiB402
CSPI03G19710Cp4.1LG14g06860Cucurbita pepo (Zucchini)cpecpiB209
CSPI03G19710Cp4.1LG09g00250Cucurbita pepo (Zucchini)cpecpiB035
CSPI03G19710CsGy3G019630Cucumber (Gy14) v2cgybcpiB110
CSPI03G19710Carg15058Silver-seed gourdcarcpiB1024
CSPI03G19710Carg20332Silver-seed gourdcarcpiB0575
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G19710Silver-seed gourdcarcpiB0573
CSPI03G19710Cucumber (Chinese Long) v3cpicucB166
CSPI03G19710Watermelon (97103) v2cpiwmbB177
CSPI03G19710Wax gourdcpiwgoB263
CSPI03G19710Wild cucumber (PI 183967)cpicpiB114
CSPI03G19710Cucumber (Gy14) v1cgycpiB321
CSPI03G19710Cucurbita maxima (Rimu)cmacpiB290
CSPI03G19710Cucurbita maxima (Rimu)cmacpiB327
CSPI03G19710Cucurbita maxima (Rimu)cmacpiB417
CSPI03G19710Cucurbita moschata (Rifu)cmocpiB280
CSPI03G19710Cucurbita moschata (Rifu)cmocpiB405
CSPI03G19710Cucurbita moschata (Rifu)cmocpiB601
CSPI03G19710Cucumber (Chinese Long) v2cpicuB139
CSPI03G19710Melon (DHL92) v3.5.1cpimeB169
CSPI03G19710Watermelon (Charleston Gray)cpiwcgB207
CSPI03G19710Watermelon (97103) v1cpiwmB258
CSPI03G19710Cucurbita pepo (Zucchini)cpecpiB032
CSPI03G19710Cucurbita pepo (Zucchini)cpecpiB723
CSPI03G19710Bottle gourd (USVL1VR-Ls)cpilsiB151
CSPI03G19710Melon (DHL92) v3.6.1cpimedB160
CSPI03G19710Cucumber (Gy14) v2cgybcpiB210