Cp4.1LG14g06860 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g06860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor Pcc1
LocationCp4.1LG14 : 181806 .. 183678 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATTTGGGGGGAAAATCCGGCGGTTTTCAACCAGAATTGAAGCTATGCCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAATTGGGAATTCAGCTGGTTGTTCTCTCTTTCTCCAAGCCCATAAATGTATAATTACATGCTTTCCTTCGATTGTATGCCATATGCTTTTATATCAGTTTGTTCGTTGATGTTGCTGTGTTAGCTTTTGGGTGAGCTTCGCCTTTTTAGCTTTATCTTATTTCTCTTGTGATTGATCTGTTGTGTTCTTTCTCTGGTTCACTGGTTTTTCCACGGGGGAAAAACAAAAGACAATGATGATGATGATGTTCTTGCAACTGCCAAGCCATTCTTACCCGGAAAGCTCAATCTTTTATTGCTGAATCCGGAGTTTTTAACTACAGTAGTGCCTCGAACGTTCAGAAATGCCATTAATTCCCAATTGTTGGAATGATGGACCTTATTAACTAGCCAAAGCTCTGATCTTTCGCTGTGGTTCCTGGAAGCCAATGATGTTTTTTGGGTCTTGCCAGCGATCAACCATTGCTATTTTATCTTTCATCTTTTCTCGATTGCCTTCTAGAGACACAACAAGTAATTTGCTTCTTTTTCCAAGTATTCAATCTGGTTTGCTTTCTGCAGTGACTTTGAAGTCGATTATGAGTCGGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGGTGCTTCTCCATGATATCAATCTTCACATTGTGCCTCCGTATACTTAACTTGTTTCTGATTCCATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAAGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATGTGAGCCTCTCTTTCTCTTCGAATTCCTGGTTCTTAATGTACGTCTAACAGTAGATAGATACCATAATAGCTTAATACAGGATTCTTTTGAGCATTAGTAAGGCTGCTGCGTTCATATTTCTCCGCAATCATATTTTGGCACTCCCATTAGCTGCTCATTTTTTTTCTCGTAGACACTTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGATAGCCTTACATGCCCCTGGCCCTCTTATATCAAGTGTCACTTTATGCTTAAAGTAGCTATCATTTTAATTTACTACCTATCTGTAATTTTTTCACAATATGATTTGTAGTGGTTTGATCGAGTGTGAAGGTACTCATTCCAACATTGAGATCTAACGAGATGACATTTTCACCCACATGATGATATCATTCATGTTAATAACCATTAGAAAGGATGATCAATCCTACTTAATACATGGATAAACTTGGAAACGACAAAAATTATATCAATTTTATTAAACTAAATTATAAACAATAATTTGATGTGATTGTGGTTCATCATATCATTTGAAGTGGAAAAGAACAAAGAAATGACTTCATCGTGGGATGAAGGAAAACTGGTATATGGAATTCAATAACGTTCATGAAAGCACAAAGTGGCATCCCTAATGAATTGAATTTGAAGACCCCACTCACCAGCTGATTCCTCTTGTGCTAGTATTCATCCAAGTAAGTGTACAATGTATCGTCTTTCTTTGACTTGCGTCGGCTAAGCAAGGCCTTCAGGAGGCGTTTGCTTTTGCTGGGATATTGTTCAACATCTTTGCTGTTATCCCTCCTTTCTGCTGGCATCCGCATCGATGCTGATTTCCTAGGTGCCGAAGGGTACTGGTACCAAAGAAAAATTCATGTTGCAAAATCTCAGTTACTAGTAAAACACCATATACTTTTGCACAACATAAATGCAATT

mRNA sequence

GTTATTTGGGGGGAAAATCCGGCGGTTTTCAACCAGAATTGAAGCTATGCCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAATTGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCGGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAAGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACTTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGCCTTCAGGAGGCGTTTGCTTTTGCTGGGATATTGTTCAACATCTTTGCTGTTATCCCTCCTTTCTGCTGGCATCCGCATCGATGCTGATTTCCTAGGTGCCGAAGGGTACTGGTACCAAAGAAAAATTCATGTTGCAAAATCTCAGTTACTAGTAAAACACCATATACTTTTGCACAACATAAATGCAATT

Coding sequence (CDS)

ATGCCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAATTGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCGGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAAGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACTTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGCCTTCAGGAGGCGTTTGCTTTTGCTGGGATATTGTTCAACATCTTTGCTGTTATCCCTCCTTTCTGCTGGCATCCGCATCGATGCTGATTTCCTAGGTGCCGAAGGGTACTGGTACCAAAGAAAAATTCATGTTGCAAAATCTCAGTTACTAGTAAAACACCATATACTTTTGCACAACATAAATGCAATT

Protein sequence

MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGAFRRRLLLLGYCSTSLLLSLLSAGIRIDADFLGAEGYWYQRKIHVAKSQLLVKHHILLHNINAI
BLAST of Cp4.1LG14g06860 vs. TrEMBL
Match: A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.8e-40
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT SVAS GEP WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 153

BLAST of Cp4.1LG14g06860 vs. TrEMBL
Match: M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-33
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 1

Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M    S  +DG+  WEFSCD EVDYESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 97
          S+HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+G
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKG 96

BLAST of Cp4.1LG14g06860 vs. TrEMBL
Match: A0A124SFY0_CYNCS (EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_017027 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.4e-31
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1

Query: 15  WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHFEAVEARFLRA 74
           WEFSCD EVDY+SE+KA IVY AL VDKELQPDKV+R M++SDGKLS+HFEAVEARFLRA
Sbjct: 20  WEFSCDLEVDYKSEEKAGIVYSALAVDKELQPDKVRRLMSISDGKLSVHFEAVEARFLRA 79

Query: 75  SFSAFVDVLTLATKTIEDFGQG 97
           SFSAFVDVLTLATKTIE FG+G
Sbjct: 80  SFSAFVDVLTLATKTIEQFGEG 101

BLAST of Cp4.1LG14g06860 vs. TrEMBL
Match: A0A061G2H6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015432 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.8e-31
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 1

Query: 6  SVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHFE 65
          S  SD    WEFSCD EVD ESE+ ASIVY ALVVDKELQPDKVKR+M++SDGKLS+HFE
Sbjct: 5  SELSDTPNQWEFSCDLEVDLESEENASIVYAALVVDKELQPDKVKRQMSISDGKLSVHFE 64

Query: 66 AVEARFLRASFSAFVDVLTLATKTIEDFGQG 97
          AVEARFLRASFSAFVDVL LATKTIE+ G G
Sbjct: 65 AVEARFLRASFSAFVDVLILATKTIEELGPG 95

BLAST of Cp4.1LG14g06860 vs. TrEMBL
Match: A0A0B0PDL0_GOSAR (L antigen family member 3 OS=Gossypium arboreum GN=F383_00710 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.5e-31
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1

Query: 9  SDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHFEAVE 68
          SD    WEFSCD EVD+ESE+ ASIVY AL VDKELQPDKVKR+M++SDGKLS+HFEAVE
Sbjct: 8  SDAPNQWEFSCDLEVDFESEENASIVYAALGVDKELQPDKVKRQMSISDGKLSVHFEAVE 67

Query: 69 ARFLRASFSAFVDVLTLATKTIEDFGQG 97
          ARFLRASFSAFVDVLTLA+KTIE+ G G
Sbjct: 68 ARFLRASFSAFVDVLTLASKTIEELGPG 95

BLAST of Cp4.1LG14g06860 vs. TAIR10
Match: AT5G53045.1 (AT5G53045.1 unknown protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-28
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1

Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M  T    +  +  W+FSC+ +V +ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
          S+HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: gi|449456983|ref|XP_004146228.1| (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 9.8e-40
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SVAS GEP WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 1  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
          SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ
Sbjct: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 95

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: gi|700202525|gb|KGN57658.1| (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 9.8e-40
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 1

Query: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT SVAS GEP WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 153

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: gi|659133652|ref|XP_008466840.1| (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 4.1e-38
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1

Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SVASDGE  WEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKL
Sbjct: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFG 95
          SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG
Sbjct: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFG 94

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: gi|596012112|ref|XP_007218647.1| (hypothetical protein PRUPE_ppa013862mg [Prunus persica])

HSP 1 Score: 149.8 bits (377), Expect = 4.0e-33
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 1

Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M    S  +DG+  WEFSCD EVDYESE+ ASIVY AL VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 97
          S+HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+G
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKG 96

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: gi|645258086|ref|XP_008234719.1| (PREDICTED: uncharacterized protein LOC103333623 [Prunus mume])

HSP 1 Score: 148.7 bits (374), Expect = 8.9e-33
Identity = 73/96 (76.04%), Postives = 83/96 (86.46%), Query Frame = 1

Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M    S  +DG+  WEFSCD EVDYESE+ ASIVY  L VDKELQPDKVKR+M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYSVLAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 97
          S+HFEAVEARFLRAS+SAFVDVLTLATKTIE+FG+G
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKG 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7A2_CUCSA6.8e-4092.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1[more]
M5X2X8_PRUPE2.8e-3377.08Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1[more]
A0A124SFY0_CYNCS4.4e-3184.15EKC/KEOPS complex, subunit Pcc1 OS=Cynara cardunculus var. scolymus GN=Ccrd_0170... [more]
A0A061G2H6_THECC5.8e-3179.12Uncharacterized protein OS=Theobroma cacao GN=TCM_015432 PE=4 SV=1[more]
A0A0B0PDL0_GOSAR7.5e-3179.55L antigen family member 3 OS=Gossypium arboreum GN=F383_00710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G53045.13.1e-2862.11 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449456983|ref|XP_004146228.1|9.8e-4092.63PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
gi|700202525|gb|KGN57658.1|9.8e-4092.63hypothetical protein Csa_3G238730 [Cucumis sativus][more]
gi|659133652|ref|XP_008466840.1|4.1e-3888.30PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo][more]
gi|596012112|ref|XP_007218647.1|4.0e-3377.08hypothetical protein PRUPE_ppa013862mg [Prunus persica][more]
gi|645258086|ref|XP_008234719.1|8.9e-3376.04PREDICTED: uncharacterized protein LOC103333623 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g06860.1Cp4.1LG14g06860.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 19..91
score: 3.0
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 14..106
score: 5.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g06860Cp4.1LG09g00250Cucurbita pepo (Zucchini)cpecpeB024