CmaCh18G013240 (gene) Cucurbita maxima (Rimu)

NameCmaCh18G013240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTranscription factor Pcc1
LocationCma_Chr18 : 10134910 .. 10136157 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGTTAGGTTTAGCGAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGGTTCTTCTCTCTCTCTCTCTCTCTCTCTAAGCCCATAAATGCATAGTTACAAGTTTTCCTTCGATAGTATGGCATGCTTTCAGATCAGTTTGTTTATTATCGTTGCTACGTTAGCATTTTGGTGAGCTTCGCGTCTTTAGTTTAATCTTATTTCTCATTTGATTAATCCGTTTTGTTTTTTTCTCTGGTTCCTTGCAATTTCCATATTCAAAATAAGACAATGATAATGATGATGATGATCATGTTCTTGCGCCTGGCAAGTGGCAACCCATTTTTCTTTTGTTGCTGAACCCGAAGTTTTGCGAGTAAAATAGTGTCATGAAAGCTCAAATATGCAACGGTTTCTTCTTTTGCTATGGTTCCTAGAACCCAATGTTGTTTCCTTTCTGGTCTTTAACAATTGCTATTTGTTCCTAAATGGTCATTGCGCTTGCTTCTTTCTTTAAATGGTCAACATTTGTGTTGGAAACTTGCAGTTTAACTCATTGTTTGCTATCTGCAGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGGTGCTTCTCGATTATTTCAACCTTCGCATTGTGCTCCCTAGTGGACTTGTTTCTGATTTGATTTCTGTGCCAATTACAGTTGCAGCCAGACAAGGTGAAAAGGGGGATGACAGTTTCTGATGGAAAACTTTCAGTGTGAGCCTATTATGCTCTTGGCATTCCTCATTAATAATACATGGATACCAAAATAGCTTAATACAGAATTCTTGGGAACATTCACAATTCTCTGCAATCATTTTTTAGAATTTTCATTAGCTGTCTGATTTGTTTCATGCAGACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATGTAGTGCTTTTCTGGACGTTCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATAGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACAATATGATGATTTGTAGTGGTTTGATCCATGGCGAAGAACCATATCCTACATCCATCATTATAACATTCCAACATTGACATCCAACAATATAACATTTTCAATAACATATTACTCCTTATATTTAGCCAC

mRNA sequence

GTTTTGTTAGGTTTAGCGAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGGGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATGTAGTGCTTTTCTGGACGTTCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGATAGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACAATATGATGATTTGTAGTGGTTTGATCCATGGCGAAGAACCATATCCTACATCCATCATTATAACATTCCAACATTGACATCCAACAATATAACATTTTCAATAACATATTACTCCTTATATTTAGCCAC

Coding sequence (CDS)

ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGGGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATGTAGTGCTTTTCTGGACGTTCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA

Protein sequence

MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKLSVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF
BLAST of CmaCh18G013240 vs. TrEMBL
Match: A0A0A0L7A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-37
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
           M PTASV S G+ KWEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS SAF+DVLTLA KTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of CmaCh18G013240 vs. TrEMBL
Match: M5X2X8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-32
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
          MA  AS  +DG  +WEFSCD EVD ESE+ ASIVY AL VDKELQPDKVKR M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRAS SAF+DVLTLA KTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of CmaCh18G013240 vs. TrEMBL
Match: A0A061G2H6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015432 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-30
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 1

Query: 6  SVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKLSVHFE 65
          S +SD   +WEFSCD EVD ESE+ ASIVY ALVVDKELQPDKVKR M++SDGKLSVHFE
Sbjct: 5  SELSDTPNQWEFSCDLEVDLESEENASIVYAALVVDKELQPDKVKRQMSISDGKLSVHFE 64

Query: 66 AVEARFLRASCSAFLDVLTLAIKTIEDFGQGLD 99
          AVEARFLRAS SAF+DVL LA KTIE+ G G++
Sbjct: 65 AVEARFLRASFSAFVDVLILATKTIEELGPGME 97

BLAST of CmaCh18G013240 vs. TrEMBL
Match: B9I1X5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02410g PE=4 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 8.8e-30
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 1

Query: 2   APTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKLS 61
           A  A+  +  DA+W+FSCDFEVD  SE+ ASIVY AL VDKELQPDKVKR M+VS+GKLS
Sbjct: 36  AAAAAAAAAMDAQWDFSCDFEVDFGSEENASIVYAALAVDKELQPDKVKRLMSVSNGKLS 95

Query: 62  VHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGL 98
           VHFEAVEARFLRAS SAF+DVLTL  KTIE+FG+G+
Sbjct: 96  VHFEAVEARFLRASFSAFVDVLTLTTKTIEEFGKGM 131

BLAST of CmaCh18G013240 vs. TrEMBL
Match: V7CVI7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G057400g PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 1

Query: 5  ASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKLSVHF 64
          AS       +WEFSCD E+D  SE+ ASIVY AL VDKELQPDKVKRGM+VSDGKLSVHF
Sbjct: 2  ASTTPHSQPQWEFSCDMEMDFGSEENASIVYTALAVDKELQPDKVKRGMSVSDGKLSVHF 61

Query: 65 EAVEARFLRASCSAFLDVLTLAIKTIEDFGQ 96
          EA EARFLRAS SAF+DVLTLA KTIE+FGQ
Sbjct: 62 EATEARFLRASFSAFVDVLTLATKTIEEFGQ 92

BLAST of CmaCh18G013240 vs. TAIR10
Match: AT5G53045.1 (AT5G53045.1 unknown protein)

HSP 1 Score: 119.8 bits (299), Expect = 9.6e-28
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
          MA T    +  D  W+FSC+ +V  ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQ 96
          SVHFEA+EAR LRAS SAF+DVLTLA +TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

BLAST of CmaCh18G013240 vs. NCBI nr
Match: gi|659133652|ref|XP_008466840.1| (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-38
Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
           M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS S+F+DVLTLA KTIEDFG  ++F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of CmaCh18G013240 vs. NCBI nr
Match: gi|449456983|ref|XP_004146228.1| (PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-37
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
           M PTASV S G+ KWEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKR M+ SDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS SAF+DVLTLA KTIEDFGQ  DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

BLAST of CmaCh18G013240 vs. NCBI nr
Match: gi|700202525|gb|KGN57658.1| (hypothetical protein Csa_3G238730 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-37
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 1

Query: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
           M PTASV S G+ KWEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLDF 100
           S+HFEAVEARFLRAS SAF+DVLTLA KTIEDFGQ  DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of CmaCh18G013240 vs. NCBI nr
Match: gi|470144659|ref|XP_004307966.1| (PREDICTED: uncharacterized protein LOC101306760 [Fragaria vesca subsp. vesca])

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-32
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
          MA  AS  +DG  +WEFSCD EVD ESE+ ASIVYN L VDKELQPDKVKR M+VS+GKL
Sbjct: 1  MAAMASDKADGQTQWEFSCDMEVDYESEEIASIVYNTLAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRAS SAF+DVLTLA KTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

BLAST of CmaCh18G013240 vs. NCBI nr
Match: gi|596012112|ref|XP_007218647.1| (hypothetical protein PRUPE_ppa013862mg [Prunus persica])

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-32
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 1

Query: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKRGMTVSDGKL 60
          MA  AS  +DG  +WEFSCD EVD ESE+ ASIVY AL VDKELQPDKVKR M+VS+GKL
Sbjct: 1  MAAVASDKADGQTQWEFSCDLEVDYESEESASIVYAALAVDKELQPDKVKRQMSVSNGKL 60

Query: 61 SVHFEAVEARFLRASCSAFLDVLTLAIKTIEDFGQGLD 99
          SVHFEAVEARFLRAS SAF+DVLTLA KTIE+FG+G++
Sbjct: 61 SVHFEAVEARFLRASYSAFVDVLTLATKTIEEFGKGME 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7A2_CUCSA2.0e-3783.84Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238730 PE=4 SV=1[more]
M5X2X8_PRUPE2.5e-3275.51Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013862mg PE=4 SV=1[more]
A0A061G2H6_THECC6.7e-3075.27Uncharacterized protein OS=Theobroma cacao GN=TCM_015432 PE=4 SV=1[more]
B9I1X5_POPTR8.8e-3072.92Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02410g PE=4 SV=2[more]
V7CVI7_PHAVU2.0e-2975.82Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G057400g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G53045.19.6e-2862.11 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659133652|ref|XP_008466840.1|3.3e-3881.82PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo][more]
gi|449456983|ref|XP_004146228.1|2.8e-3783.84PREDICTED: uncharacterized protein LOC101217139 [Cucumis sativus][more]
gi|700202525|gb|KGN57658.1|2.8e-3783.84hypothetical protein Csa_3G238730 [Cucumis sativus][more]
gi|470144659|ref|XP_004307966.1|3.6e-3275.51PREDICTED: uncharacterized protein LOC101306760 [Fragaria vesca subsp. vesca][more]
gi|596012112|ref|XP_007218647.1|3.6e-3275.51hypothetical protein PRUPE_ppa013862mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G013240.1CmaCh18G013240.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 18..91
score: 8.9
NoneNo IPR availablePANTHERPTHR31283FAMILY NOT NAMEDcoord: 15..94
score: 6.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G013240Cucumber (Gy14) v2cgybcmaB357
CmaCh18G013240Cucumber (Gy14) v2cgybcmaB628
CmaCh18G013240Melon (DHL92) v3.6.1cmamedB403
CmaCh18G013240Melon (DHL92) v3.6.1cmamedB433
CmaCh18G013240Silver-seed gourdcarcmaB0714
CmaCh18G013240Silver-seed gourdcarcmaB1367
CmaCh18G013240Cucumber (Chinese Long) v3cmacucB0491
CmaCh18G013240Cucumber (Chinese Long) v3cmacucB0500
CmaCh18G013240Watermelon (97103) v2cmawmbB400
CmaCh18G013240Watermelon (97103) v2cmawmbB424
CmaCh18G013240Wax gourdcmawgoB0500
CmaCh18G013240Wax gourdcmawgoB0505
CmaCh18G013240Cucurbita maxima (Rimu)cmacmaB306
CmaCh18G013240Cucurbita maxima (Rimu)cmacmaB337
CmaCh18G013240Cucurbita maxima (Rimu)cmacmaB338
CmaCh18G013240Cucurbita maxima (Rimu)cmacmaB396
CmaCh18G013240Cucumber (Gy14) v1cgycmaB0009
CmaCh18G013240Cucumber (Gy14) v1cgycmaB0601
CmaCh18G013240Cucurbita moschata (Rifu)cmacmoB403
CmaCh18G013240Cucurbita moschata (Rifu)cmacmoB405
CmaCh18G013240Cucurbita moschata (Rifu)cmacmoB416
CmaCh18G013240Wild cucumber (PI 183967)cmacpiB417
CmaCh18G013240Wild cucumber (PI 183967)cmacpiB425
CmaCh18G013240Cucumber (Chinese Long) v2cmacuB412
CmaCh18G013240Cucumber (Chinese Long) v2cmacuB419
CmaCh18G013240Melon (DHL92) v3.5.1cmameB349
CmaCh18G013240Melon (DHL92) v3.5.1cmameB375
CmaCh18G013240Watermelon (Charleston Gray)cmawcgB347
CmaCh18G013240Watermelon (Charleston Gray)cmawcgB365
CmaCh18G013240Watermelon (97103) v1cmawmB373
CmaCh18G013240Watermelon (97103) v1cmawmB388
CmaCh18G013240Cucurbita pepo (Zucchini)cmacpeB423
CmaCh18G013240Cucurbita pepo (Zucchini)cmacpeB425
CmaCh18G013240Cucurbita pepo (Zucchini)cmacpeB453
CmaCh18G013240Bottle gourd (USVL1VR-Ls)cmalsiB363
CmaCh18G013240Bottle gourd (USVL1VR-Ls)cmalsiB385