Lsi04G000120 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G000120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	chr04 : 191152 .. 191430 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTCACAGTTCGAGGTCTGAAGGTTCCGCCGAACTCCGCCAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCAGCGACCCTAAGGTCTTCTCGTTCCTGCAATTTACTCTATTTGCGTCTAAATTCTATATGATTTTGGGGGCGGCTTAA

mRNA sequence

ATGGCATTCACAGTTCGAGGTCTGAAGGTTCCGCCGAACTCCGCCAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCAGCGACCCTAAGGTCTTCTCGTTCCTGCAATTTACTCTATTTGCGTCTAAATTCTATATGATTTTGGGGGCGGCTTAA

Coding sequence (CDS)

ATGGCATTCACAGTTCGAGGTCTGAAGGTTCCGCCGAACTCCGCCAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCAGCGACCCTAAGGTCTTCTCGTTCCTGCAATTTACTCTATTTGCGTCTAAATTCTATATGATTTTGGGGGCGGCTTAA

Protein sequence

MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQFTLFASKFYMILGAA

Homology

[Close]

BLAST of Lsi04G000120 vs. Swiss-Prot
Match: NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-21
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 3  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIR 62
          F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR
Sbjct: 5  FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63 KNSHVSDPKVFSFLQF 79
           N+H++DPKV   L F
Sbjct: 65 NNAHITDPKVIDLLIF 80

[Close]

BLAST of Lsi04G000120 vs. TrEMBL
Match: A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.3e-31
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. TrEMBL
Match: A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVSDPKVFSFLQF 79
           IRKNSHV++PKV   L F
Sbjct: 103 IRKNSHVTNPKVIDMLLF 120

[Close]

BLAST of Lsi04G000120 vs. TrEMBL
Match: A0A0D2VQ58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.4e-26
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAF++R +KVPPNSASLEEAR+RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+SE
Sbjct: 1  MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV++PKV   L F
Sbjct: 61 IRKNSHVTNPKVIDLLLF 78

[Close]

BLAST of Lsi04G000120 vs. TrEMBL
Match: A0A0D2QWB7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G120800 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 57/73 (78.08%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFT+R +KVPPNSASLEEAR+RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+SE
Sbjct: 1  MAFTLRSVKVPPNSASLEEARSRVFDFFRQACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61 IRKNSHVSDPKVF 74
          IRKNSHV++PK++
Sbjct: 61 IRKNSHVTNPKIY 73

[Close]

BLAST of Lsi04G000120 vs. TrEMBL
Match: A0A067KWF8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-25
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IMDIYNL DV TVS+LRS+IAS+
Sbjct: 1  MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNS+V++PKV   L F
Sbjct: 61 IRKNSNVTNPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. TAIR10
Match: AT3G12260.1 (AT3G12260.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 103.6 bits (257), Expect = 6.6e-23
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 3  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIR 62
          F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR
Sbjct: 5  FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63 KNSHVSDPKVFSFLQF 79
           N+H++DPKV   L F
Sbjct: 65 NNAHITDPKVIDLLIF 80

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: gi|659092257|ref|XP_008446979.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: gi|449449258|ref|XP_004142382.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-31
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: gi|1009153610|ref|XP_015894726.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-26
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          M+F++R +KVPPNSASLEEAR+RVFDFFR ACRS+P+++D+YNLDDV TVS+LRSTIASE
Sbjct: 1  MSFSLRSVKVPPNSASLEEARSRVFDFFREACRSIPSVIDMYNLDDVVTVSRLRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: gi|590568839|ref|XP_007010910.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-26
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVSDPKVFSFLQF 79
           IRKNSHV++PKV   L F
Sbjct: 103 IRKNSHVTNPKVIDMLLF 120

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: gi|823247658|ref|XP_012456498.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAF++R +KVPPNSASLEEAR+RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+SE
Sbjct: 1  MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV++PKV   L F
Sbjct: 61 IRKNSHVTNPKVIDLLLF 78

The following BLAST results are available for this feature:

BLAST of Lsi04G000120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA6_ARATH	1.2e-21	63.16	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]

BLAST of Lsi04G000120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRV0_CUCSA	4.3e-31	91.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1	[more]
A0A061FR11_THECC	1.4e-26	78.21	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 P...	[more]
A0A0D2VQ58_GOSRA	9.4e-26	75.64	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1	[more]
A0A0D2QWB7_GOSRA	1.2e-25	78.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G120800 PE=4 SV=1	[more]
A0A067KWF8_JATCU	1.6e-25	76.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1	[more]

BLAST of Lsi04G000120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	6.6e-23	63.16	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Lsi04G000120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092257\|ref\|XP_008446979.1\|	1.3e-31	92.31	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449449258\|ref\|XP_004142382.1\|	6.2e-31	91.03	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1009153610\|ref\|XP_015894726.1\|	2.1e-26	75.64	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590568839\|ref\|XP_007010910.1\|	2.1e-26	78.21	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|823247658\|ref\|XP_012456498.1\|	1.3e-25	75.64	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000120.1	Lsi04G000120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 2..72 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G000120	Csa5G624440	Cucumber (Chinese Long) v2	culsiB368
Lsi04G000120	CSPI05G27740	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G000120	Cucsa.307830	Cucumber (Gy14) v1	cgylsiB497
Lsi04G000120	CmaCh04G013200	Cucurbita maxima (Rimu)	cmalsiB669
Lsi04G000120	CmoCh04G013920	Cucurbita moschata (Rifu)	cmolsiB660
Lsi04G000120	Cla009926	Watermelon (97103) v1	lsiwmB320
Lsi04G000120	MELO3C012486	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G000120	ClCG05G026950	Watermelon (Charleston Gray)	lsiwcgB291
Lsi04G000120	MELO3C012486.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G000120	Cla97C05G109190	Watermelon (97103) v2	lsiwmbB292
Lsi04G000120	Bhi07G001013	Wax gourd	lsiwgoB383
Lsi04G000120	Cp4.1LG01g09770	Cucurbita pepo (Zucchini)	cpelsiB352
Lsi04G000120	CsGy5G027170	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G000120	Carg02004	Silver-seed gourd	carlsiB767
Lsi04G000120	CsaV3_5G036890	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G000120	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G000120	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G000120	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G000120	Silver-seed gourd	carlsiB664