CmoCh04G013920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6) (1.6.5.3)
Location	Cmo_Chr04 : 7079597 .. 7082972 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTCTTATATATAAACCAGGCGCGTGGGAGGCTGCGAGGAGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTACTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTCTCTCTTTCCTGCAATTTACTGTATTTTTTTCTTATTTTTTTGTCAATTTATATATGATTTGGGAGCGTCTTCGGGAGTTTTGTTGAATCCTTCATTTCCTTAAGTGGTGTGGATAAACTCTGGGGACGTCTTGTCTTTGTGTCTATTAGAGACGTCTGAGAAAGGATTTTTGAAGCTGTCTTTTCCATCAATTAGAAACGAAAGCTTTATAGAAATAGAAAAACGAATAAAGGTGTTTAGAGGGTTTATCTTTCTCGTTCTTGTCGTCGTTGTAAATCTATCATTCTGGAGAGTTATTTTTACCGAGTCAAATAGATATTGGTGTTCTGGCAGTTTTGCATTTGCAACGCAACCGGATGATTTCTCCCTCCTAAAGATTGGGCACATTAGATAGGGTTGAAAATGTGGATGAGTTGTGTTCTTCCGTACCTTCACGAAGTTTTTCGTGGATAATCAATTCAATCCGTTTTTCTTTTTGGGGGCTATTCCTTCTAATTCTGGGATCAATTTTCACGGTGTATGAGCTCTTTCAGTGCATTTGATGGTAGGATTCTTTGGACAAACAATCAATTGTTGACTTTTTGGGAGAATTTTTCTCAAAGGAGTTCATTGAAGATAGGCGTGCAAATACAAGTTTGAAAGACTCTAGGCCTAGAACTCATTTAATTGCTTCTTTCTGCTGCTGCAATCTTAAAAAAATGATCTCTTTTTTGGAGTCTTCGGTTAGAAAGAAACAAGAGAGTTGAATCTTTATTCTTTGGTCAATCAATTCCAGCTCTAATTTAGGTGCCTCTTTTTAAGTCCCTTGTGTATTGTCTCTGCTATATGTTCCATTTATCAATGCATTTTGTTATGATGCAAAAGTTTCATGATATTACCATAATCTTAAATTTTTTTGGTATGTGAGAGTATCTGATGAGTCGATAGATATGCTCTCTCTAAAAAAATTATTATTAACAGCCTAAGGGCAAGGGAGAAGAGAGAACCCCCTTCCACAAAAAACTAAAGGAAAGCTTTTCAATTGATTTGGACCATGGTTAGCTATAGTTACAAAAGATAATTGCTTGTACCTTTAATTACTAGATATAATTCATGCCTGTGCCTGCATTTTATCCATTTACTATTGTTTCATCTTTTCATCGAGTGCCGCCAATTTGTTTCCTCAAACCTTGTACTCCATGGGTTTATTGTCTTTCTTATGGTTACTATCTATTTATGATGGAACCTATTGTTTGGTGATCTACAGTTGCTGCCAGTTGAATGTTACTTGTAAATTTGTCATTTTTGTGCTATCATCTATGTGATGGAGACATTCTCTGTGTTCATTGCTTTAGAGGTGAGTTCAAATTATTTTATAAAGACAAAACGCCCGATTAGCAGTTTGACTCTTGACAATTGACCAATTTCCCTTGGATTTTTTGCTGGGGCCTCTTGATTTCCAAATGAAGCGTAGATGATTTTGAACATCAGAGGTTTCTAGAATATTGCACCCCGTTTGCTTACTACCACCTCTAGTAATTTAAGGTACAAGCATGTTTATTTGACAAACCCAAGGAATTAGTTTTAATATTGTGTTTCTTCTGTAAATCATTCCTTTGGTATTAACTACTTCACATCTCGAAGGCTGATCCAAACAACTTAAACCTTTTAGATACTTTGCTTCCATGGGAAATTTTAATAAACTTTGTTGGATTTTTTTTTTTTTTTCCTCCTTTTTTTTGGGGAAATCACTGTCTCTAGGCGATCCATGGCGGATCGCCAAGTGATTGTGAGGGAAAAAAAAGGAACTCCTCCAGTCGCTTCGCAATGGCAGAGTCTCATTTATGGCATGGTGTAGGGTCTAAATCTGTCAGAACTACAAGTTGTAGTTTATGTGTAGAAATCTCGCTGTGTGTGGTAAATTAAGTGTAACATGTTACAGAAGCCGCTTGGTAGTAGTGTCTTTCTAGGACTGTTATTAAGAAACTGCTGGTGAAGGTTAGAAACTTAGACCAATATTTTTTAGCGGAGGTGCTCCACTTATGGTGACGGGCAGGGTAGGTTTAGCCTCCTTTCATCCAGTGGTCTGACAATGTGAGCACTTCTGCATATCTGTGTGTGTAACCATTCGAAATGCCTCGACTTTTTTAAAACAAGTCCGAGTCGAATAGTAATGATTCAAAGCACCTATTTTTATACTATTTTGGAAATCCTTGGACTCAATCTTATGGATATGTAAAATATAGGATTTCTAATCCTAGCAAGAAAGGGAGGGAAACCGATACTCAATTTAAACTGAGTAAATAGAATTTCATACTCGATCTCATAGATACATATAGAAATGTGTGTGAGTGAGAGAGAGGGAGAGAGAGATAGTGGCTTCGATCAATTGATATCTGTTGTAGACCTCATGCCCCAAGTACGAAGCTTGCGGTGCACTTCGAAAATAATTTGCATTCGAGGAATGGAGGTTGTAGGTGAAGATTATTTTAATTTCTTAAGATTCTGTTCTTTACACGGTCTTGGAGTCGAACTGCGAATGTGAAGATTATTTTTACAGTTTCTGACTTTTCAAGTTTACAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTCCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCTCTGGACAATGAACACTCCTATTTGATCGTTTTGTTGGATTGAATTGTTGGTATGTTATGACCGCTGTATCTTTTACAGAAGCAAAGCAATCCAAGATCTTTGGTTCTATTTACACCGTTTTTAATTATCAAGCCCAAATGGTTGTCTACTCTAGCTTTAGTTCCAGTTGTCTTCGTTTTATCACTGGCATGTTTATAAGTTCTAATCATTATCAAGAT

mRNA sequence

TTGCTCTTATATATAAACCAGGCGCGTGGGAGGCTGCGAGGAGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTACTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTCCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCTCTGGACAATGAACACTCCTATTTGATCGTTTTGTTGGATTGAATTGTTGGTATGTTATGACCGCTGTATCTTTTACAGAAGCAAAGCAATCCAAGATCTTTGGTTCTATTTACACCGTTTTTAATTATCAAGCCCAAATGGTTGTCTACTCTAGCTTTAGTTCCAGTTGTCTTCGTTTTATCACTGGCATGTTTATAAGTTCTAATCATTATCAAGAT

Coding sequence (CDS)

ATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTACTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGA

Homology

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BLAST of CmoCh04G013920 vs. Swiss-Prot
Match: NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.6e-48
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of CmoCh04G013920 vs. Swiss-Prot
Match: NDUA6_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=Ndufa6 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-09
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  L EA+ RV + +R+  R +P  +++  LD   T  Q R  +     KN+HVTDP
Sbjct: 22  PIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLD--ITVKQGRDKVREMFMKNAHVTDP 81

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 82  RVVDLLVIKGKMELQETIKVWKQRTHVM 107

[Close]

BLAST of CmoCh04G013920 vs. Swiss-Prot
Match: NDUA6_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-09
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++++ LD   +  Q R  +    +KN+H+TDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKMELEETIKVWKQRTHVM 104

[Close]

BLAST of CmoCh04G013920 vs. Swiss-Prot
Match: NDUA6_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla GN=NDUFA6 PE=2 SV=3)

HSP 1 Score: 58.2 bits (139), Expect = 8.1e-08
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of CmoCh04G013920 vs. Swiss-Prot
Match: NDUA6_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=NDUFA6 PE=1 SV=3)

HSP 1 Score: 58.2 bits (139), Expect = 8.1e-08
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP
Sbjct: 45  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 104

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 105 RVVDLLVIKGKIELEETIKVWKQRTHVM 130

[Close]

BLAST of CmoCh04G013920 vs. TrEMBL
Match: A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-63
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T SQ+RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. TrEMBL
Match: A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.3e-57
Identity = 109/132 (82.58%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIM+IYNLDDV T SQ+RST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD+ +KD+G+S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

[Close]

BLAST of CmoCh04G013920 vs. TrEMBL
Match: W9R0G7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023974 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-55
Identity = 106/132 (80.30%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFT+R +KVPPNSASLEEAR+RVF+FFR+ACRS+P+I+ IYNLDDV T SQ+RSTIASE
Sbjct: 1   MAFTLRSVKVPPNSASLEEARHRVFNFFRTACRSIPSIIGIYNLDDVVTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNS++T+PKVIDMLLFKG EEL NI EHAKQRHH+IGQYVVG  GLVQD+G+KDQGIS
Sbjct: 61  IRKNSYLTNPKVIDMLLFKGTEELNNILEHAKQRHHLIGQYVVGNHGLVQDLGTKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           +FLK+FYKSNYF
Sbjct: 121 SFLKDFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. TrEMBL
Match: A0A067KWF8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-55
Identity = 107/132 (81.06%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IM+IYNL DV T S++RS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD+ SKDQG+S
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNY+
Sbjct: 121 DFLKNFYKSNYY 132

[Close]

BLAST of CmoCh04G013920 vs. TrEMBL
Match: A0A0D2VQ58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.6e-55
Identity = 104/132 (78.79%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAF++R +KVPPNSASLEEAR+RVFDFFR ACRS+P IM+IYNLDDV T S++RS+I+SE
Sbjct: 1   MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVID+LLFKGMEEL NI EHAKQRHHIIGQYV+GR+GL QD+ +KD+G S
Sbjct: 61  IRKNSHVTNPKVIDLLLFKGMEELNNIVEHAKQRHHIIGQYVLGRQGLAQDLDTKDEGTS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 121 DFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. TAIR10
Match: AT3G12260.1 (AT3G12260.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-49
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: gi|659092257|ref|XP_008446979.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 256.1 bits (653), Expect = 3.2e-65
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQ+RSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG+S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: gi|449449258|ref|XP_004142382.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 248.8 bits (634), Expect = 5.2e-63
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T SQ+RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: gi|590568839|ref|XP_007010910.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 229.6 bits (584), Expect = 3.3e-57
Identity = 109/132 (82.58%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIM+IYNLDDV T SQ+RST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD+ +KD+G+S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: gi|1009153610|ref|XP_015894726.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 228.8 bits (582), Expect = 5.6e-57
Identity = 105/132 (79.55%), Postives = 124/132 (93.94%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           M+F++R +KVPPNSASLEEAR+RVFDFFR ACRS+P+++++YNLDDV T S++RSTIASE
Sbjct: 1   MSFSLRSVKVPPNSASLEEARSRVFDFFREACRSIPSVIDMYNLDDVVTVSRLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKG EEL N+ EHAKQRHH+IGQYVVGR+GL+QD+G+KDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGTEELNNVLEHAKQRHHLIGQYVVGRQGLIQDIGTKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY SNYF
Sbjct: 121 NFLKNFYTSNYF 132

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BLAST of CmoCh04G013920 vs. NCBI nr
Match: gi|802574147|ref|XP_012068683.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 223.0 bits (567), Expect = 3.0e-55
Identity = 107/132 (81.06%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IM+IYNL DV T S++RS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD+ SKDQG+S
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNY+
Sbjct: 121 DFLKNFYKSNYY 132

The following BLAST results are available for this feature:

BLAST of CmoCh04G013920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA6_ARATH	3.6e-48	70.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
NDUA6_MOUSE	7.4e-09	37.50	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=...	[more]
NDUA6_BOVIN	7.4e-09	34.09	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=ND...	[more]
NDUA6_GORGO	8.1e-08	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla ...	[more]
NDUA6_HUMAN	8.1e-08	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=...	[more]

BLAST of CmoCh04G013920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRV0_CUCSA	3.6e-63	92.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1	[more]
A0A061FR11_THECC	2.3e-57	82.58	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 P...	[more]
W9R0G7_9ROSA	2.1e-55	80.30	Uncharacterized protein OS=Morus notabilis GN=L484_023974 PE=4 SV=1	[more]
A0A067KWF8_JATCU	2.1e-55	81.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1	[more]
A0A0D2VQ58_GOSRA	3.6e-55	78.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1	[more]

BLAST of CmoCh04G013920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	2.0e-49	70.00	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of CmoCh04G013920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092257\|ref\|XP_008446979.1\|	3.2e-65	94.70	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449449258\|ref\|XP_004142382.1\|	5.2e-63	92.42	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590568839\|ref\|XP_007010910.1\|	3.3e-57	82.58	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|1009153610\|ref\|XP_015894726.1\|	5.6e-57	79.55	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|802574147\|ref\|XP_012068683.1\|	3.0e-55	81.06	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013920.1	CmoCh04G013920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 46..84 score: 2.
None	No IPR available	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 2..132 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G013920	Cucsa.307830	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G013920	CmaCh04G013200	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013920	Cla009926	Watermelon (97103) v1	cmowmB701
CmoCh04G013920	Csa5G624440	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G013920	MELO3C012486	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G013920	ClCG05G026940	Watermelon (Charleston Gray)	cmowcgB662
CmoCh04G013920	CSPI05G27740	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G013920	Lsi04G000120	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G013920	Cp4.1LG01g09770	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013920	MELO3C012486.2	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G013920	CsaV3_5G036890	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G013920	Cla97C05G109190	Watermelon (97103) v2	cmowmbB737
CmoCh04G013920	Bhi07G001013	Wax gourd	cmowgoB0891
CmoCh04G013920	CsGy5G027170	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G013920	Carg02004	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013920	Silver-seed gourd	carcmoB0987
CmoCh04G013920	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013920	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013920	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013920	Cucurbita pepo (Zucchini)	cmocpeB651