CSPI05G27740 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G27740
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	Chr5 : 26163310 .. 26167090 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCTGCGAGTCTTGAAGAAGCCCGGTGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCCTTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTCTTCTCGTTCCTTCAATTTACTCTATTTGCTTCTTGTTTCTATATGATTTTCGATTCTCCTTAATGGGTTTAGGAGATTTTCCCTCTGTGTCGATTAGAGACATAAGGAATTTTGAAGCTTTCTTGCCGTTCATTTGAAACGAAGCTTTATAGAAATATAAAACAAAGAAAAGAGTTTTAGAGGGCTTTGGTGCCCTAGGGGTTTTGCCATTGCAACGCAGCGGGGCGACTTTTTGAACTTGGATGATTTCGCCCTCCTTAATAGTGGGCATATTAGATAGGGTGGATAAAGTTGATGACTTGTGTTCTTTCGTCTCAACTTTTTCGTGGACAATCTATTCTATATGTTTTGTTTTTCTTGGACTCGTCCTTCTAATTATGGGAGTTGGGTATTAGTTCTTTCAGTGCTATGGTGAATTTGATGGTATGATTCTTCGGACAACCCATCAATTGCTGACTTTTTGGGAGAATTTATTTCAATGGAGTTTCTTGAAGATAGGCGTGCAAGAACAAGTTTGAAAGAACCTAGGCTTAGAACTCATTTATTTACTTCTTTTGCTACTGCAATTTTACAAAAAGTTCTATTTTTCTCCTAGAAAAGTTCTTGTTTTCGAGGTCTTCAGTTAGAAAGAAACCAGAGTGTAAAATCGTTATTTTGGGTCAGTTTACTCCAATTGAGGTGCCTTTTTTCAAACTCCTTGAAAGTTTTTTCTTCTGTATATTTCATTAATAATTTGAACGTTTCACGAGACTACCATAATCTTAATTTGTTATGGGCCTGGTATGTGAGGGTATTTGATGAATTTGTCGATGTGTACTGTCCCTAAAAAAAATATTGTTAACGGCCTAAGAGCAAGGGGATCTTGGTAGTAAATAAGATAATTAGCTGTAAAAATCATCAATGATTTTATTTTATTCTCTTTTTTATTGTTTCCTTTTATGTATTGACTCTCCTATATTAGAAGGCTACTTATCTTGCAAATAATTTAATTTATTCTATTCAATTCTTAATGGTATCAGAGAATGTGGTCAAAGGCAAAAATACAAAATCCTGGTTTTTTTTGTCTTCATTGAAACATGTTTAGGCTTGCACCAAACTTCTTCATCTTTATCATCATTCGACTAAGAAATTGTTTTGTTGTTGATGTTTGTTGCTTGGGAGCTCATTCTCATTCTCATTTGATTTCCATCATCCTTTGTCCAATAGGGAAGCTACTTAGGTTATGACCCCCCTTTATTTATTACTGGATGGTGAGGTTAGGCAAGGGAAGAGGGACTTCCAAAGAGAAAAGGAACGCTGATGGAAATCACATTGCAAAATGTAAATAATGGATTAAATAGAATCCTTGTTACGATTGGTGAAGATAGAAGAGGTTGGAAAGCATATCTTTCTCTTTTGTCTTCACTTCATGAAAGCCAGGTCCAGAACGAGAGGAAAGAGAACCCCCAAGAGGGCCAAGACAAAAAGCCATCCACGTACATCATACATTGCTGCTCTCAAGAAGGAAAATTTCCATATCTTTCACCCTCTACTGAACTAGCGAATTCATCAACCACATCAAAGGCTCCATCTCCCACATCCATCAACAAATCAGCCCATGCATATCCACATTCCTCCATCCACTTTAATAGTTCGGTTGTCATTAGGAGATACTGCTTCAACGACAATTGGTACAACATTATAAGAGCTTTCAACATTCATGAGAGTGCCTGTATCAGCAATCCTTTCAACACTGACAGGGTTGCTTATCTCTGAGGATATTGATCAAGCCAAAACCCTTAGTACAGTAAAGGTTTGGTATAAGGTAGGAAGATATTTGTTAAAATTCTCCCCTTGGACTTGGAGTGCTGAAAATGCAACGAAAGATCAAGTTGTCCTTAGCTATGGAGGTTGGATGAAAATTAGGAACCTCCCACTTGATCGATGGGATAATGACATGCTTATGTTCATTGGAGAATCTTGTGGTGGCTTCCCTGAAATTTCCGAAAAGTCATTGAAACAACTAGATCTCTTTGAAGCTTCAAGAAGGTCAACAGAAATAATAAAGGTTTTATTCCACCTGTAACCATATTCCTTCTTCTTCACATCACCGATCAAAGTACATGTTGACTTCCTTTTTAATTAGGAAAACTACCTCTGCTGGAATCCGTTGTGCACCCACTTTGCCTAGTGTTCAACAACTACTGGAGTCCAACTCGGAATCACCAATTCCAATTGGCGTAGCCCCACTAGTCTCTGCACAATCTCTACCCACAAATACCAAAACACTAAACCCATAGTTACCTGATCCTTCATGCGGTCATGCCCTCTGTCCACTTTACCTAATCCAGTTATTTTACCTGTTGCTGATCCACCAACCTACTCAATTCTCTTGTCTTAAGATCATTGAATGTACTCCTAATTCTGTTCTGACGACCTTTGGATGCTTGATAATCCACTGATGCTTCTTATCAAAAAAAAGATAATCCACTGATGCTGAGTGCTCTGTTTTTTCGAGTCTAAAACAGAGGATTCCTTTTTCGGCTTGACCTTGTGCTTATCAATCTTCTCTTCTTGTGGTCTGTTTGCATCTTCAGATAGACTCATTTTCAGCTTGCTCTGTTCTGAATACCACTTTATGTAATCATGCTTTGATTTGAAGCTCTTCAACATATTGAGAAACATTTTCCATCCCTCTTTTTCCTCACCCAATAGAATATGTAAGAATGATATTCCTTCTGTTTGGGGCCAAAAATTGCATCTTAACACCCAACCTTTCTCTAATCTGAAGCTTAAGACTTCTGTTATGCCACTGTCCATTCTTCCTTCCAGCAGAGGTGAGACCTTGATAGTGACAGGATTTTATTTGCCTCCATATCTTCAAGTTGGAATAAATCATGCTCGTGCCATATGCAGTAGGGAGAGCCAAAAACCCTGCAGCTTTCTTACTTCCATTCCTTGCTTTCTAGCCTGTAGAGCATTCTTGTTCATCATTTGTCTTGTTTTTTCGCTTTCTTGGTTTGTTTGTTTTGGTTCAAATTCTATCATCGTTTCTTTAGGATGCTCCCTATCCGAACTTTCTAATGGTGTTGTGTTAGAATGGTCGAGGTGGATGTACGTGTGGGATACTGTGTGACCCAAACATGAGGAATTTGATAACTTTTTCTTAGTTCTTACTTAATCTCCAGGTGGAGGCTATGTTCAGAGCTTTCTCCTAATTTTCCTTTTTTAATACAATTGTTTCTCTTTCCAAAAAATGAGATGGTTGGTAGCTTGTGGTAGGCCATTATTTTTGCTTGATTATTTTAATTTCCTAAGATGCTGCTCTTCTCACTGTATTGGTGTTGGACTGCGAACCTTAAGATTATTTTTATTAGTTTCCATCTCTTTTTTTTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGCAGGTCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTCTGA

mRNA sequence

ATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCTGCGAGTCTTGAAGAAGCCCGGTGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCCTTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGCAGGTCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTCTGA

Coding sequence (CDS)

ATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCTGCGAGTCTTGAAGAAGCCCGGTGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCCTTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGCAGGTCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTCTGA

Homology

[Close]

BLAST of CSPI05G27740 vs. Swiss-Prot
Match: NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR AI+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRSNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG+++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of CSPI05G27740 vs. Swiss-Prot
Match: NDUA6_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=Ndufa6 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-09
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 11  PPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  L EA+ RV + +R+  R +P  + +  LD   TV Q R  +     KN+HVTDP
Sbjct: 22  PIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLD--ITVKQGRDKVREMFMKNAHVTDP 81

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 82  RVVDLLVIKGKMELQETIKVWKQRTHVM 107

[Close]

BLAST of CSPI05G27740 vs. Swiss-Prot
Match: NDUA6_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-09
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 11  PPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  + ++ LD   +V Q R  +    +KN+H+TDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKMELEETIKVWKQRTHVM 104

[Close]

BLAST of CSPI05G27740 vs. Swiss-Prot
Match: NDUA6_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla GN=NDUFA6 PE=2 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 11  PPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  +  + LD   TV   R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of CSPI05G27740 vs. Swiss-Prot
Match: NDUA6_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=NDUFA6 PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 11  PPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  +  + LD   TV   R  +     KN+HVTDP
Sbjct: 45  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 104

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 105 RVVDLLVIKGKIELEETIKVWKQRTHVM 130

[Close]

BLAST of CSPI05G27740 vs. TrEMBL
Match: A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-67
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQDFGAKDQGRS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CSPI05G27740 vs. TrEMBL
Match: A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.0e-57
Identity = 110/132 (83.33%), Postives = 119/132 (90.15%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRS +ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD   KD+G S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

[Close]

BLAST of CSPI05G27740 vs. TrEMBL
Match: A0A067KWF8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-56
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IMDIYNL DV TVS+LRS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD  +KDQG S
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNY+
Sbjct: 121 DFLKNFYKSNYY 132

[Close]

BLAST of CSPI05G27740 vs. TrEMBL
Match: A0A0D2VQ58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.4e-56
Identity = 106/132 (80.30%), Postives = 119/132 (90.15%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAF++R +KVPPNSASLEEAR RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+SE
Sbjct: 1   MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVT+PKVID+LLFKGMEEL NI EHAKQRHHIIGQYV+GR+GL QD   KD+G S
Sbjct: 61  IRKNSHVTNPKVIDLLLFKGMEELNNIVEHAKQRHHIIGQYVLGRQGLAQDLDTKDEGTS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 121 DFLKNFYKSNYF 132

[Close]

BLAST of CSPI05G27740 vs. TrEMBL
Match: A0A0B0PLZ1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03720 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-55
Identity = 105/132 (79.55%), Postives = 119/132 (90.15%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVPPNSASLEEA+ RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+S+
Sbjct: 1   MAFTLRSVKVPPNSASLEEAKSRVFDFFRQACRSIPTIMDIYNLDDVVTKSELRSSISSQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVT+PKVID+LLFKGMEEL NI EHAKQRHHIIGQYV+GR+GL QD   KD+G S
Sbjct: 61  IRKNSHVTNPKVIDLLLFKGMEELNNIVEHAKQRHHIIGQYVLGRQGLAQDLDTKDEGTS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 121 DFLKNFYKSNYF 132

[Close]

BLAST of CSPI05G27740 vs. TAIR10
Match: AT3G12260.1 (AT3G12260.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 196.8 bits (499), Expect = 8.3e-51
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR AI+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRSNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG+++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of CSPI05G27740 vs. NCBI nr
Match: gi|449449258|ref|XP_004142382.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQDFGAKDQGRS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CSPI05G27740 vs. NCBI nr
Match: gi|659092257|ref|XP_008446979.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR RVFDFFRSACRSLPAIMDIYNLDDV TVSQLRS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

[Close]

BLAST of CSPI05G27740 vs. NCBI nr
Match: gi|590568839|ref|XP_007010910.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 229.2 bits (583), Expect = 4.3e-57
Identity = 110/132 (83.33%), Postives = 119/132 (90.15%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRS +ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD   KD+G S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

[Close]

BLAST of CSPI05G27740 vs. NCBI nr
Match: gi|1009153610|ref|XP_015894726.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 106/132 (80.30%), Postives = 120/132 (90.91%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           M+F++R +KVPPNSASLEEAR RVFDFFR ACRS+P+++D+YNLDDV TVS+LRS IASE
Sbjct: 1   MSFSLRSVKVPPNSASLEEARSRVFDFFREACRSIPSVIDMYNLDDVVTVSRLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKG EEL N+ EHAKQRHH+IGQYVVGR+GL+QD G KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGTEELNNVLEHAKQRHHLIGQYVVGRQGLIQDIGTKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY SNYF
Sbjct: 121 NFLKNFYTSNYF 132

[Close]

BLAST of CSPI05G27740 vs. NCBI nr
Match: gi|802574147|ref|XP_012068683.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-56
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARCRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IMDIYNL DV TVS+LRS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD  +KDQG S
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNY+
Sbjct: 121 DFLKNFYKSNYY 132

The following BLAST results are available for this feature:

BLAST of CSPI05G27740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA6_ARATH	1.5e-49	72.31	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
NDUA6_MOUSE	4.3e-09	38.64	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=...	[more]
NDUA6_BOVIN	4.3e-09	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=ND...	[more]
NDUA6_GORGO	4.8e-08	36.36	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla ...	[more]
NDUA6_HUMAN	4.8e-08	36.36	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=...	[more]

BLAST of CSPI05G27740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRV0_CUCSA	1.1e-67	98.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1	[more]
A0A061FR11_THECC	3.0e-57	83.33	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 P...	[more]
A0A067KWF8_JATCU	1.1e-56	82.58	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1	[more]
A0A0D2VQ58_GOSRA	7.4e-56	80.30	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1	[more]
A0A0B0PLZ1_GOSAR	1.3e-55	79.55	Uncharacterized protein OS=Gossypium arboreum GN=F383_03720 PE=3 SV=1	[more]

BLAST of CSPI05G27740 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	8.3e-51	72.31	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of CSPI05G27740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449258\|ref\|XP_004142382.1\|	1.6e-67	98.48	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|659092257\|ref\|XP_008446979.1\|	1.1e-65	96.21	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590568839\|ref\|XP_007010910.1\|	4.3e-57	83.33	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|1009153610\|ref\|XP_015894726.1\|	1.2e-56	80.30	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|802574147\|ref\|XP_012068683.1\|	1.6e-56	82.58	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G27740.1	CSPI05G27740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 2..132 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G27740	Cla009926	Watermelon (97103) v1	cpiwmB404
CSPI05G27740	Csa5G624440	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G27740	MELO3C012486	Melon (DHL92) v3.5.1	cpimeB369
CSPI05G27740	ClCG05G026940	Watermelon (Charleston Gray)	cpiwcgB408
CSPI05G27740	Lsi04G000120	Bottle gourd (USVL1VR-Ls)	cpilsiB372
CSPI05G27740	MELO3C012486.2	Melon (DHL92) v3.6.1	cpimedB363
CSPI05G27740	CsaV3_5G036890	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G27740	Cla97C05G109190	Watermelon (97103) v2	cpiwmbB397
CSPI05G27740	Bhi07G001013	Wax gourd	cpiwgoB519
CSPI05G27740	Cucsa.307830	Cucumber (Gy14) v1	cgycpiB464
CSPI05G27740	CmaCh04G013200	Cucurbita maxima (Rimu)	cmacpiB755
CSPI05G27740	CmoCh04G013920	Cucurbita moschata (Rifu)	cmocpiB745
CSPI05G27740	Cp4.1LG01g09770	Cucurbita pepo (Zucchini)	cpecpiB439
CSPI05G27740	CsGy5G027170	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G27740	Carg02004	Silver-seed gourd	carcpiB0877

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G27740	Cucurbita moschata (Rifu)	cmocpiB411
CSPI05G27740	Cucurbita pepo (Zucchini)	cpecpiB036
CSPI05G27740	Silver-seed gourd	carcpiB0758
CSPI05G27740	Cucurbita maxima (Rimu)	cmacpiB423