Cucsa.307830 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.307830
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	scaffold02978 : 108371 .. 115200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTAGACATATCTTTTACTCTCATAAGAAATAGAACTGGGAGAAGAAAAGTAGGGATTTGAAGATTGCAAGAGGTAGCGCAGCGATAGCCGAGTGGAGTTGGCGAAGGCAGAGCGAAGTTACACTCTGAAAAATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCCGCGAGTCTTGAAGAAGCCCGGAGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTCTTCTCGTTCCTTCAATTTACTCTATTTGCTTCTTGTTTCTATATGATTTTCGATTCTCCTTAATGGGTTTATGAGATTTTCCCTCTGTGTCGATTAGAGACGTAAGGAATTTTGAAGCTTTCTTGCCGTTCATTTGAAACGAAGCTTTATAGAAATATAAAACAAAGAAAAGAGTTTTAGAGGGCTTTGGTGCCCTAGGGGTTTTGCCATTGCAACGCAGCGGGGCGACTTTTTGAACTTGGATGATTTCTCCCTCCTTAATAGTGGGCATATTAGATAGGGTGGATAAAGTTGATGACTTGTGTTCTTTCGTCTCAACTTTTTCGTGGACAATCTATTCTATATGTTTTGTTTTtCTTGGACTCGTCCTTCTAATTATGGGAGTTGGGTATTAGTTCTTTCAGTGCTATGGTGAATTTGATGGTATGATTCTTCGGACAACCCATCAATTGCTGACTTTTTGGGAGATTTATTTCAATGGAGTTTCTTGAAGATAGGCGTGCAAGAACAAGTTTGAAAGAACCTAGGCTTAGAACTCATTTATTTACTTCTTTTGCTACTGCAATTTTACAAAAAGTTCTATTTTTCTCCTAGAAAATTTCTTGTTTTCGAGGTCTTCAGTTAGAAAGAAACCAGAGTGTAAAATCGTTATTTTGGGTCAGTTTACTCCAATTGAGGTGCCTTTTTTCAAACTCCTTGAAAGTTTTTTCTTCTGTATATTTCATTTATAGATGCACTTGGTTTCCTGTCAAATTCAATAGTGTATTAATAATTTGAACGTTTCACGAGACTACCATAATCTTAATTTGTTATGGGCCTGGTATGTGAGGGTATTTGATGAATTTGTCGATGTGTACTGTCCCTAAAAAAAaTATTGTTAACGGCCTAAGAGCAAGGGGATCTTGGTAGTAAATAAGATAATTAGCTGTAAAAATCATCAATGATTTTATTTTATTCTCTTTTTtATTGTTTCCTTTTATGTATTGACTCTCCTATATTAGAAGGCTACTTATCTTGCAAATAATTTAATTTATTCTATTCAATTCTTAATGGAATCAGAGAATGTGGTCAAAGGCAAAAATACAAAATCCTGGTTTTTTTTGTCTTCATTGAAACATGTTTAGGCTTGCTTGCACCAAACTTCTTCATCTTTATCATCATTCGACTAAGAAATTGTTTTGTTGTTGATGTTTGTTGCTTGGGAGCTCATTCTCATTCTCATTTGATTTCCATCATCCTTTGTCCAATAGGGAAGCTACTTAGGTTATGACCCCCCTTTATTTATTACTGGATGGTGAGGTTAGGCAAGGGAAGAGGGACTTCCAAAGAGAAAAGGAACGCTGATGGAAATCACATTGCAAAAAGTAAATAATGGATTAAATAGAATCCTTGTTACGATTGGTGAAGATAGAAGAGGTTGGAAAGCATATCTTTCTCTTTTGTCTTCACTTCATGAAAGCCAGGTCCAGAACGAGAGGAAAGAGAACCCCCAAGAGGGCCAAGACAAAAAGCCATCCACGTACATCATACATTGCTGCTCTTAAGAAGGAAAATTTCCATATCTTTCCACCCTCTACTGAACTAGCGAATTCATCAACCACATCAAAGGCTCCATCTCCCACATCCATCAACAAATCAGCCCATGCATATCCACATTCCTCCATCCACTTTAATAGTTTGGTTGTCATTAGGAGATACTGCTTCAACGACAATTGGTACAACATTATAAGAGCTTTCAACATTCATGAGAGTGCCTGTATCAGCAATCCTTTCAACACTGACAGGGTTGCTTATCTCTGAGGATATTGATCAAaCCAAAaCCCTTAGTACAGTAAAGGTTTGGTATAAGGTAGGAAGATATTTGGTAAAATTCTCCCCATGGACTTGGAGTGCTGAAAATGCAACGAAAGATCAAGTTGTCCTTAGCTATGGAGGTTGGATGAAAATTAGGAACCTCCCACTTGATCGATGGGATAATGACATGCTTATGTTCATTGGAGAATCTTGTGGTGGCTTCCTTGAAATTTCCGAAAAGCCATTGAGACGACTAGATCTCTTTGAAGCTTCAAGAAGGTCAACAGAAATAATAAAGGTTTCATTCCACCTATAACCATATTCCTTCTTCTTCACATCACCGATCAAAGTACATATTGACCTCCTTTTTAATTAGGAAAACTACCTCTGCCGGAATCTGTTGTGCACCCACTTTGCCTAGTGTTCAACAGCTACTGGAGTCCAACTCGGAATCACCAATTCCAATTGGCGTAGCCCCACTAGTCTCTGCACAATCTCTACCCACAAATACCAAAACACTAAACCCATAGTTACCTGATCCTTCATGCGGTCATGCCCTCTGTCCACTTTACCTAATCCAGTTATTTTACCTGTTGCTGATCCACCAACCTACTCAATTCTCTTGTCTTAAGATCATTGAATGTACTCCTAATTCTGTTCTGACGACCTTTGGATGCTTGATAATCCACTGATGCTTCTTATCAAAAAAaGATAATCCACTGATGCTGAGTGCTCTGTTTTTtCGAGTCTAAAACAGAGGATTCCTTTTTCGGCTTGACCTTGTGCTTATCAATCTTCTCTTCTTGTAGTCTGTTTGCATCTTCAGATAGACTCATTTTCAGCTTGCTCTGTTCTGAATACCACTTTATGTAATCATGCTTTGATTTGAAGCTCTTCAACATATTGAGAAACATTTTCCATCCCTCTTTTTCCTCACCCAATAGAATATGTAAGAATGATATTCCTTCTGTTTGGGGCCAAAAATTGCATCTTAACACCCAACCTTTCTCTAATCTGAAGCTTAAGACTTCTGTTATGCCACTGTCCATTCTTCCTTCCAGCAGAGGTGAGACCTTGATAGTGACAGGATTTTATTTGCCTCCATATCTTCAAGTTGGAATAAATCATGCTCGTGCCATATGCAGTAGGGAGAGCCAAAAACCCTGCAGCTTTCTTACTTCCATTCCTTGCTTTCTAGCCTGTAGAGCATTCTTGTTCGTCATTTGTCTTGTTTTTtCTCTTTCTTGGTttGTTTGTTTTGGTTCAAATTCTATCTAGGGTGCTCCCTATCCGAACTTTCTAATGGTGTTGTGTTAGAATGGTCAAGGTGGATGTACGTGTGGGATACTGTGTGACCCAAACATGAGGAATTTGATAACTTTTTTTtAGTTCTTACTTAATCTCCAGGTGGAGGCTATGTTCAGAGTTTTCTCCTAATTTTCCTTTTTtAATACAATTGTTTCTCTTTCCAAAAAAaTGAGATGGATGGTAGCTTGTGGTAGGCCATTATTTTTGCTTGATTATTTTAATTTCCTAAGATGCTGCTCTTCTCACTGTATTGGTGTTGGACTGCGAACGTTAAGATTATTTTTATTAGTTTCCATCTCTTTTTTTTtACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAGCATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGCAGGTCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTCTGAACTTCATCTTTCCTGGAATTATTCCAGTGGAATATGAGATATCCATAGTTTTAATTTGTGATCTTGATAAATAATAAAGGAACTATATCTGTCCTCTAGACCATGACATCATTTGATCGTTTTGTGGGATTGAATTGTCGGTATATTATAGCCAAAGCAATCCAAGATCTTTGGTTCGATTTACTCTTAACCATTAAGCCTAAATGTGGTTGTCTACCCTATGCTTTGGTTCGAGATGGTGCTTCCCTTGGTTTCGATTGTTTTCATTCATGACTGCCATGTTTATAAGTTCAATACAGTATCAAACTTGGAAAGGGACAGTGTGGTCTCTATTGGTTTATATAGAGAGAGAGAAATGTAAAACGAAAACTATTGTCTTGATTGTGGTGTGTGAAGAATGCACAAAAACCATTTATTTGATTGGATTAAGTTAATTTTGAGTTTTCGAGAACAGCTCTAACTTCATTGTAACGTTTGGGGTGTCTAATTTAAAGGCACTTTTTGCAGTGATTTTGATTTCATTTTCGAAATCACATATTACTGTTAATTCAAAATAAATTTTGATTTTAGGAAAATTTTATTTGTAAGTTTAAATTAATTTTAAGGTTAAATATTAAATTAATTTTAAGTCATAAAAATAGCCTTGAATCTAAACATGATAAAAGTAATTTTAATAATTTCAAAACTACTCTACAGTCAACAAGATTTGGATGATGCACCATTCTCCCCTCACCCCTAAAGTTCGCAATCTAGTGACTCACTCCCCCcTCACCCTTTCCCCTATGTGTGTTTGACTCTTATGGTTATAATTAATGGAGACAAGAAAAGAAACTGTATGTTATATATACCTTAGTTTTTAATAATATGGGGAAATATAAGGCAAAAAAGTGTGCAGTAATCTCTCCTGATGTTTCTCTAGTCATTTCTTTAACCATTTTCCTCTGGGCATTCTATCATCTATAGATTCCTCGAGGATAATATTGTTTTCTATAAAAGAAAAaTTAAAAAGAAGGGTGGGGAACTTCCTTTAAATAAAATACAGGTACATACATACAGCTTATTACAAGTAGCATCTCTAGAACATCACAAGATTGATAACATATAATCATGCACACCAATGAAAATTGAGAACTCAAGCAATTGTTAAATTGTTAATCTAGTGCTTTTGTCAATATACTCAAGGAAAAATCAAAAAGCTATTCACTCTTTTGGGCGAGCAAGCCAGAGGGAGCTAAGGGCTCGCAGTCTGGAGAAGTAATCATGAATTGCAAGAAGTGCACGAGCCGACTGACGAATTGTCAAAATCCGATGCATTTGTTGTAGTGTTTGTTGTCGTAGATTGTCAGCCTGTTAATTTTtTTAGCCCCAAAATCCCAAACAAGGAAAGGGAGAAAAAATCTTTAGAAAGCACTAGAATGGAAAGAGTTTTTGGCTCATAAGTGAATGTGAAGCAGAATGGAAATATACACATTGTCTAAAGCTCGGACTCAAATTTCTTACAGAACATATGAGTAAGCACCTGAATGTGAGATCTAAATGTAGATTTGAACAGCATATGCAAGAAAAGATGGGTTCCCAACCGAGAACTCCATGGAAAGATAAATGGCAAAATGCATTTTCTTCTCTTTACAGGTGCTGGGGAATAAGTTTAAGAAAATCTGCTAGGCATACCTGGCGAATAAAACCCTCAAGGGTCCCAAGTTTACCCATGGCCGTGGCCATTTGACCCATATAGTTTGCCACATTGCCAGATGTATTCGAGGAGCCAAGAGATCCACTGGATAACGTCTCAGCCAACGATTGTTGCAATGCTTCCATGCCTTGTGACAATGCATCTTCGGTCTGTTGTGAGGACTGCTGCAAGTTGGATATGCCCATCAACTGCTGTTCTGTGAGGGGCTCCAATTGATTGACAAGAAGCTGCAACACAACGGCAGTTTTAGTAATGCTTAAAACTCAGAGCTCTAATTCATACTGGTAGCAACATCAAAACATCAGTTAAAGCAGTTCAACATTTTGTGTTAGACATAGCATATTCTATATTCCTATCGCCAGCATGAAAATGAACTTAAGAAGCAAAAGCTGATCGATGAAAAATATTACTAGCAAAAGTTCACATCATATCCTCTTCATCTACTTATTTGTTGTTCTATGCAGTTCCCCTCGTTCTTTGTTAAGTATTTTAGAGTACTTTCCCTCCTTTGTGTGGTTCCCAAATATAGAGATTTTTCAGAGTTGTCCTACACCATTGGAAGTATGAACACTATGACGCAACAAAATGAGCACACCTTTAGAAGCTCTGACGAACGGAAACCACCAAGCCACAAAAAACATCTTTCAGCAGGAGTTTTCCACATGCCAGACAGTAAATGAAAAACATCAGCCTTTGCAGCGACACCCTTTAGCCGAAAAACTTCATCATAATGAGCCAAGATGCCATCCACAATCATTCGAAGTTCAGTATCACTGGCATGAGAATTAACAGCTGCTCTCAGTTCATTGATTTGCTTGTTTTGTTCTTCCAACCAACGGGCATATTCCACATCAAATGCCATGGCCCCTGCAAATGTGAAGTAGCTGATGCTATGCAACTTCAAACTGAAAAGATAGCTAAAAGAAAaCACACTTACTGCCAAAAAATTGTTCAGGTAGATAATCTAGATTCTTTGCAAACATTAATTATGATGCAGGAGATAAATGAAACTGAGTTAGGCTAATAATAATGTCAGATTACAATGTCTCTCACAGACTAACATTGTCATATCTCAAATTTCAGGTTGTCTTTTGAAAGTAAATATCATGATTCAAGATAGTTCAAATACCATTTCCAGCCATTGAATGGGCCTGATCTCCTGAGCTTGATATGAAGATTCCCTAAACA

mRNA sequence

TTGTAGACATATCTTTTACTCTCATAAGAAATAGAACTGGGAGAAGAAAAGTAGGGATTTGAAGATTGCAAGAGGTAGCGCAGCGATAGCCGAGTGGAGTTGGCGAAGGCAGAGCGAAGTTACACTCTGAAAAATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCCGCGAGTCTTGAAGAAGCCCGGAGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAGCATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGTTGTCTTTTGAAAGTAAATATCATGATTCAAGATAGTTCAAATACCATTTCCAGCCATTGAATGGGCCTGATCTCCTGAGCTTGATATGAAGATTCCCTAAACA

Coding sequence (CDS)

ATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCCGCGAGTCTTGAAGAAGCCCGGAGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAGCATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGTTGTCTTTTGAAAGTAAATATCATGATTCAAGATAGTTCAAATACCATTTCCAGCCATTGA

Protein sequence

MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGCLLKVNIMIQDSSNTISSH*

Homology

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BLAST of Cucsa.307830 vs. Swiss-Prot
Match: NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-42
Identity = 84/116 (72.41%), Postives = 99/116 (85.34%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR AI+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQG 119

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BLAST of Cucsa.307830 vs. Swiss-Prot
Match: NDUA6_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=Ndufa6 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  L EA+ RV + +R+  R +P  + +  LD   TV Q R  +     KN+HVTDP
Sbjct: 22  PIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLD--ITVKQGRDKVREMFMKNAHVTDP 81

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 82  RVVDLLVIKGKMELQETIKVWKQRTHVM 107

[Close]

BLAST of Cucsa.307830 vs. Swiss-Prot
Match: NDUA6_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  + ++ LD   +V Q R  +    +KN+H+TDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKMELEETIKVWKQRTHVM 104

[Close]

BLAST of Cucsa.307830 vs. Swiss-Prot
Match: NDUA6_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla GN=NDUFA6 PE=2 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  +  + LD   TV   R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of Cucsa.307830 vs. Swiss-Prot
Match: NDUA6_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=NDUFA6 PE=1 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  +  + LD   TV   R  +     KN+HVTDP
Sbjct: 45  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 104

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 105 RVVDLLVIKGKIELEETIKVWKQRTHVM 130

[Close]

BLAST of Cucsa.307830 vs. TrEMBL
Match: A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQDFGAKDQG
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQG 118

[Close]

BLAST of Cucsa.307830 vs. TrEMBL
Match: A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-49
Identity = 98/118 (83.05%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRS +ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD   KD+G
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEG 160

[Close]

BLAST of Cucsa.307830 vs. TrEMBL
Match: A0A067KWF8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.0e-49
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R LKVPPNSASLEEAR+RVFDFFR+ACRS+P IMDIYNL DV TVS+LRS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD  +KDQG
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQG 118

[Close]

BLAST of Cucsa.307830 vs. TrEMBL
Match: A0A0D2VQ58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.5e-48
Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAF++R +KVPPNSASLEEARSRVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+SE
Sbjct: 1   MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVT+PKVID+LLFKGMEEL NI EHAKQRHHIIGQYV+GR+GL QD   KD+G
Sbjct: 61  IRKNSHVTNPKVIDLLLFKGMEELNNIVEHAKQRHHIIGQYVLGRQGLAQDLDTKDEG 118

[Close]

BLAST of Cucsa.307830 vs. TrEMBL
Match: A0A0B0PLZ1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03720 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.7e-48
Identity = 94/118 (79.66%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVPPNSASLEEA+SRVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+S+
Sbjct: 1   MAFTLRSVKVPPNSASLEEAKSRVFDFFRQACRSIPTIMDIYNLDDVVTKSELRSSISSQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVT+PKVID+LLFKGMEEL NI EHAKQRHHIIGQYV+GR+GL QD   KD+G
Sbjct: 61  IRKNSHVTNPKVIDLLLFKGMEELNNIVEHAKQRHHIIGQYVLGRQGLAQDLDTKDEG 118

[Close]

BLAST of Cucsa.307830 vs. TAIR10
Match: AT3G12260.1 (AT3G12260.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 171.8 bits (434), Expect = 3.0e-43
Identity = 84/116 (72.41%), Postives = 99/116 (85.34%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR AI+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQG 119

[Close]

BLAST of Cucsa.307830 vs. NCBI nr
Match: gi|449449258|ref|XP_004142382.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-58
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQDFGAKDQG
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQG 118

[Close]

BLAST of Cucsa.307830 vs. NCBI nr
Match: gi|659092257|ref|XP_008446979.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDV TVSQLRS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 118

[Close]

BLAST of Cucsa.307830 vs. NCBI nr
Match: gi|1009153610|ref|XP_015894726.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-49
Identity = 95/118 (80.51%), Postives = 109/118 (92.37%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           M+F++R +KVPPNSASLEEARSRVFDFFR ACRS+P+++D+YNLDDV TVS+LRS IASE
Sbjct: 1   MSFSLRSVKVPPNSASLEEARSRVFDFFREACRSIPSVIDMYNLDDVVTVSRLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVTDPKVIDMLLFKG EEL N+ EHAKQRHH+IGQYVVGR+GL+QD G KDQG
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGTEELNNVLEHAKQRHHLIGQYVVGRQGLIQDIGTKDQG 118

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BLAST of Cucsa.307830 vs. NCBI nr
Match: gi|590568839|ref|XP_007010910.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 202.6 bits (514), Expect = 4.5e-49
Identity = 98/118 (83.05%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRS +ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD   KD+G
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEG 160

[Close]

BLAST of Cucsa.307830 vs. NCBI nr
Match: gi|802574147|ref|XP_012068683.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-48
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R LKVPPNSASLEEAR+RVFDFFR+ACRS+P IMDIYNL DV TVS+LRS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG 119
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD  +KDQG
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQG 118

The following BLAST results are available for this feature:

BLAST of Cucsa.307830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA6_ARATH	5.3e-42	72.41	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
NDUA6_MOUSE	1.0e-08	38.64	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=...	[more]
NDUA6_BOVIN	1.0e-08	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=ND...	[more]
NDUA6_GORGO	1.1e-07	36.36	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla ...	[more]
NDUA6_HUMAN	1.1e-07	36.36	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=...	[more]

BLAST of Cucsa.307830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRV0_CUCSA	1.3e-58	99.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1	[more]
A0A061FR11_THECC	3.1e-49	83.05	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 P...	[more]
A0A067KWF8_JATCU	9.0e-49	83.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1	[more]
A0A0D2VQ58_GOSRA	4.5e-48	80.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1	[more]
A0A0B0PLZ1_GOSAR	7.7e-48	79.66	Uncharacterized protein OS=Gossypium arboreum GN=F383_03720 PE=3 SV=1	[more]

BLAST of Cucsa.307830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	3.0e-43	72.41	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Cucsa.307830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449258\|ref\|XP_004142382.1\|	1.8e-58	99.15	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|659092257\|ref\|XP_008446979.1\|	1.5e-57	97.46	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1009153610\|ref\|XP_015894726.1\|	3.4e-49	80.51	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590568839\|ref\|XP_007010910.1\|	4.5e-49	83.05	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|802574147\|ref\|XP_012068683.1\|	1.3e-48	83.05	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.307830.1	Cucsa.307830.1	mRNA
Cucsa.307840.2	Cucsa.307840.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 2..132 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.307830	Cla009926	Watermelon (97103) v1	cgywmB560
Cucsa.307830	Csa5G624440	Cucumber (Chinese Long) v2	cgycuB441
Cucsa.307830	MELO3C012486	Melon (DHL92) v3.5.1	cgymeB508
Cucsa.307830	ClCG05G026940	Watermelon (Charleston Gray)	cgywcgB531
Cucsa.307830	CSPI05G27740	Wild cucumber (PI 183967)	cgycpiB464
Cucsa.307830	CmaCh04G013200	Cucurbita maxima (Rimu)	cgycmaB0850
Cucsa.307830	CmoCh04G013920	Cucurbita moschata (Rifu)	cgycmoB0848
Cucsa.307830	Lsi04G000120	Bottle gourd (USVL1VR-Ls)	cgylsiB497
Cucsa.307830	Cp4.1LG01g09770	Cucurbita pepo (Zucchini)	cgycpeB0806
Cucsa.307830	MELO3C012486.2	Melon (DHL92) v3.6.1	cgymedB508
Cucsa.307830	CsaV3_5G036890	Cucumber (Chinese Long) v3	cgycucB479
Cucsa.307830	Cla97C05G109190	Watermelon (97103) v2	cgywmbB534
Cucsa.307830	Bhi07G001013	Wax gourd	cgywgoB619
Cucsa.307830	Carg02004	Silver-seed gourd	carcgyB0969

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.307830	Cucurbita maxima (Rimu)	cgycmaB0849
Cucsa.307830	Cucurbita moschata (Rifu)	cgycmoB0847
Cucsa.307830	Cucurbita pepo (Zucchini)	cgycpeB0804
Cucsa.307830	Silver-seed gourd	carcgyB0816