CmaCh04G013200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G013200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	Cma_Chr04 : 6713142 .. 6716715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGCGCGTGGGAGGCTGCGAGGAGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGATTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTATTTCTCATATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTCTCTCTTTCCTGCATTTTACTGTATATTTTTCTTATTTTTTGTCAATTTATATATGATTTGGGAGCGTCTTCGGGAGTTTTGTTGAATCCTTCATTTCCTTAAGTGGTGTGGATAAACTCTGGGGACTTCTTGTCTTTGTGTCTATTAGAGACGTCTGAGAAAGGATTTTTGAAGCTGTCTTTTCCATCAATTAGAAACGAAAGCTTTATAGAAATAGAAAAACGAATAGAGGAGTTTAGAGGGTTTATCTTTCTCGTTCTTGTCGTCGTTGTAAATCTATCATTCTGGAGAGTTATTTTTGCCGAGTCAAATAGATATTGGTGTTCTGGCAGTTTTGCATTTGCAACGCAACTGGATGATTTCGCCCTCCTGAAGATTGTGCACATTAGATAGGGTTGAAAATGTAGATGAGTTGTGTTCTTCCGTCCCTTCACGAAGTTTTTCGTGGATAATCAATTCAATCCGTTTTTCTTTTTGGGGGCTATTCCTTCTAACTCTGGGATATTGTTTCACGGTGTATGAGCTCTTTCAGTGCATTTGATGGTAGGATTCTTTGGACAAACAATCAATTGTTGACTTTTTGGGAGAATTTTTCTCAAAGGAGTTCATTGAAGATAGGCGTGCAAATACAAGTTTGAAAGAATCTAGGCCTAGAACTCATCTAATTGCTTCTTTCTGCTGCTGCAATCTTAAAAAAATTCTCTCTTTTTTGGAGTCTTCGGTTAGAAAGAAACAAGAGAGTTGAATCTTTATTTTTTGGTCAATCAACTCCAGCTCTAATTGAGGTGCCTCCCTTGTGAATTGTTTCTGCTATATGTCTCATTTATCAATGCATTTTGTTTCGTATCAAAATTATATTAATGATGCAAAAGTTTCATGATATTACCATAATCTTAATTTTTTTTGGTATGTGAGAGTATCTGATGAATCGGTAGATATGCTGTCTCTAAAAAAATTATTATTAACAGCCTAAGGGCAAGGGAGAAGAGAGAACCCCCTTCCACAAAAAACTAAAGGAAAGCTTTTCAATTGATTTGGACCATGGTTAGCTATAGTTACAAAAGATAATTGCTTGTACCTTTAATTACTAGATATAATTCATGCCTGTGCCTGCATTTTATCCATTTACTATTGTTTCATCTTTTCATCAAGTGCTGCCAATTTGTTTCCTCAAACCTTGTACCCCAATGGTTTATTGTCTTTCTTATGGTTACTATCTATTTATGGTGGAACCTATTGTTTGGTGATCTACAGTTGCTGCCAGTTGAATATTACTTGTAAATTTGTCATTTTTGTGCTATCATCTATGTGATGGAGACATTCTCTGTGTTCATTGCTTTAGAGGTGAATTCAAATTATTTTATAAAGACAAAACGCCAGAAAAAGAATGCGATTAGCAGTTTGACTCTTGACAATTGACCAATTCCCCTTGAATTTTTTGCTGGGGCCTCTTGATTTCCAAATGAAGCGTAGATGATTTTGAACATCAGAGGTTTCTCGAATATTGCACCCCATTTGCTTACTACCACCTCTAGTAATTAAAGGTACAAGCATGTTTATTTGACAAACCCAAGGAATTAGTTTTAATATTGTGTTTCTTCTGTAAATCATTCCTTTGGTATTAACTACTTCACATCTCGATGGCCGATCCATACAACTTAAACCTTTTAGATAATTTGCTTCCATGGGAAATTTAATCAACTTTGTTGGATTTTTTTTTTCCTCCTTTTTTTGGGGAAATCACTGGCTTTAGGCGACCCATGGCTGATTGCCAAGTGATCGTGAGGGAAAAAAAGAAACTCCTCCAGTCGCTTCGCAATGGCAGAGTCTCATTTATGGCATAGTGTGGGGTCTAAATCTTTCAGAACTACAAGTTGTAGTTTATGTGTAGAAATCTCGCTGTGTGTGGTAAATTAAGTGTAACATGTTACAGAAGCCGCTTGGTAGTAGTGTCTTTCTAGGACTGTTATTAAGAAACTGCTGGTGAAGATAGAAACTTAGACCATTATTTTTTAGCGGAGGTGCTCCACTTATGGAGACGGGCAGGGTAGGTTTAGCCTCCTTTCACCCGGTGGTCTAACAATGTGAGCACTTCTGCATATCTGTGTGGGTAACAATTCTAAATGTCTCGACTTTTTTAAAACAAGTCCGAGTCAAATAGTAATGATTCAAAGCACCTCTTTTTACACTATTTTGGAAACCCATGGACTCAATCTTATGGATATGTAAAATACAGGATTTTCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAACTGAGTAAACAGATTTTCATACTCTATCTCATAGATACATATAAAAATGTGTGTGATACATATAAATGTGTGTGAGTGAGAGAGGGAGAGAGAGATAGTGGCTTCAATCGAGTGATATCTGTTGTGCACCTCATGCCCCAAGTAAGAAGCTTGCGGTGCACTTTGAAAATAATTTGCATTCGAGGAATGGAGGTTGTAGGAATAAAATCTTAATCCAGAAGGATAAATTGAGTGCAAAGGATTATATAATTGAGAAATTAGCTGATGATGATGACATAAAAATGCTTGAAGAGTTCGGTCAATATACTCTAGAGGCATTAATTATTCACGTTCTGGGAATAGTTTTCAACACATATTTTTTGCTTGATTCTTTGAAATAAAATCTGTGTCTATTTTAATTTCTTAAGATTCTGTTCTTTACACTGTCTTGGAGTCAGGACTGCGAATGTGAAGATTATTTTTACAGTTTCTGACTTTTCAAGTTTACAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTTCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCTCTTGACAATGAACACTCCTACTTGATCGTTTTGTTGGATTGAATTGTTGGTATATTATGACCGCTGTAGCTTTTACAGACGCAAAGCAATCCAAGATCTTTGGTTCTATTTTCACCGTTTTTAATTATCAAGCCCAAATGGTTGTCTACTCTAGCTTTAGTTCCAGTTGTCTTCGTTTTATCACTGGCATGTTTATAAGTTCTAATCATTATCAAGATCACA

mRNA sequence

CAGGCGCGTGGGAGGCTGCGAGGAGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGATTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTATTTCTCATATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTTCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCTCTTGACAATGAACACTCCTACTTGATCGTTTTGTTGGATTGAATTGTTGGTATATTATGACCGCTGTAGCTTTTACAGACGCAAAGCAATCCAAGATCTTTGGTTCTATTTTCACCGTTTTTAATTATCAAGCCCAAATGGTTGTCTACTCTAGCTTTAGTTCCAGTTGTCTTCGTTTTATCACTGGCATGTTTATAAGTTCTAATCATTATCAAGATCACA

Coding sequence (CDS)

ATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGATTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTATTTCTCATATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGA

Protein sequence

MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

Homology

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BLAST of CmaCh04G013200 vs. Swiss-Prot
Match: NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-47
Identity = 90/130 (69.23%), Postives = 110/130 (84.62%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   S +R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

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BLAST of CmaCh04G013200 vs. Swiss-Prot
Match: NDUA6_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=Ndufa6 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-09
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASEIRKNSHVTDP 70
           P  S  L EA+ RV + +R+  R +P  +++  LD   T+   R  +     KN+HVTDP
Sbjct: 22  PIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLD--ITVKQGRDKVREMFMKNAHVTDP 81

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 82  RVVDLLVIKGKMELQETIKVWKQRTHVM 107

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BLAST of CmaCh04G013200 vs. Swiss-Prot
Match: NDUA6_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-09
Identity = 29/88 (32.95%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++++ LD   ++   R  +    +KN+H+TDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKMELEETIKVWKQRTHVM 104

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BLAST of CmaCh04G013200 vs. Swiss-Prot
Match: NDUA6_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla GN=NDUFA6 PE=2 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T+   R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of CmaCh04G013200 vs. Swiss-Prot
Match: NDUA6_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=NDUFA6 PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T+   R  +     KN+HVTDP
Sbjct: 45  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 104

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 105 RVVDLLVIKGKIELEETIKVWKQRTHVM 130

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BLAST of CmaCh04G013200 vs. TrEMBL
Match: A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-63
Identity = 121/132 (91.67%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T+S +RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmaCh04G013200 vs. TrEMBL
Match: A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.6e-57
Identity = 108/132 (81.82%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIM+IYNLDDV T S +RST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD+ +KD+G+S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

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BLAST of CmaCh04G013200 vs. TrEMBL
Match: A0A067KWF8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.5e-56
Identity = 107/132 (81.06%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IM+IYNL DV T+S +RS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD+ SKDQG+S
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNY+
Sbjct: 121 DFLKNFYKSNYY 132

[Close]

BLAST of CmaCh04G013200 vs. TrEMBL
Match: W9R0G7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023974 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-55
Identity = 105/132 (79.55%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFT+R +KVPPNSASLEEAR+RVF+FFR+ACRS+P+I+ IYNLDDV T+S +RSTIASE
Sbjct: 1   MAFTLRSVKVPPNSASLEEARHRVFNFFRTACRSIPSIIGIYNLDDVVTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNS++T+PKVIDMLLFKG EEL NI EHAKQRHH+IGQYVVG  GLVQD+G+KDQGIS
Sbjct: 61  IRKNSYLTNPKVIDMLLFKGTEELNNILEHAKQRHHLIGQYVVGNHGLVQDLGTKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           +FLK+FYKSNYF
Sbjct: 121 SFLKDFYKSNYF 132

[Close]

BLAST of CmaCh04G013200 vs. TrEMBL
Match: A0A0D2VQ58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.2e-55
Identity = 104/132 (78.79%), Postives = 121/132 (91.67%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAF++R +KVPPNSASLEEAR+RVFDFFR ACRS+P IM+IYNLDDV T S +RS+I+SE
Sbjct: 1   MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVID+LLFKGMEEL NI EHAKQRHHIIGQYV+GR+GL QD+ +KD+G S
Sbjct: 61  IRKNSHVTNPKVIDLLLFKGMEELNNIVEHAKQRHHIIGQYVLGRQGLAQDLDTKDEGTS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 121 DFLKNFYKSNYF 132

[Close]

BLAST of CmaCh04G013200 vs. TAIR10
Match: AT3G12260.1 (AT3G12260.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 190.3 bits (482), Expect = 7.7e-49
Identity = 90/130 (69.23%), Postives = 110/130 (84.62%), Query Frame = 1


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   S +R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of CmaCh04G013200 vs. NCBI nr
Match: gi|659092257|ref|XP_008446979.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 256.1 bits (653), Expect = 3.2e-65
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT+S +RSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG+S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

[Close]

BLAST of CmaCh04G013200 vs. NCBI nr
Match: gi|449449258|ref|XP_004142382.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 248.8 bits (634), Expect = 5.2e-63
Identity = 121/132 (91.67%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T+S +RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmaCh04G013200 vs. NCBI nr
Match: gi|1009153610|ref|XP_015894726.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-57
Identity = 105/132 (79.55%), Postives = 124/132 (93.94%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           M+F++R +KVPPNSASLEEAR+RVFDFFR ACRS+P+++++YNLDDV T+S +RSTIASE
Sbjct: 1   MSFSLRSVKVPPNSASLEEARSRVFDFFREACRSIPSVIDMYNLDDVVTVSRLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKG EEL N+ EHAKQRHH+IGQYVVGR+GL+QD+G+KDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGTEELNNVLEHAKQRHHLIGQYVVGRQGLIQDIGTKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY SNYF
Sbjct: 121 NFLKNFYTSNYF 132

[Close]

BLAST of CmaCh04G013200 vs. NCBI nr
Match: gi|590568839|ref|XP_007010910.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 228.0 bits (580), Expect = 9.5e-57
Identity = 108/132 (81.82%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIM+IYNLDDV T S +RST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD+ +KD+G+S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

[Close]

BLAST of CmaCh04G013200 vs. NCBI nr
Match: gi|802574147|ref|XP_012068683.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 107/132 (81.06%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60
           MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IM+IYNL DV T+S +RS+IAS+
Sbjct: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNS+VT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVG+ GLVQD+ SKDQG+S
Sbjct: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNY+
Sbjct: 121 DFLKNFYKSNYY 132

The following BLAST results are available for this feature:

BLAST of CmaCh04G013200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA6_ARATH	1.4e-47	69.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
NDUA6_MOUSE	9.6e-09	36.36	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus GN=...	[more]
NDUA6_BOVIN	9.6e-09	32.95	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=ND...	[more]
NDUA6_GORGO	4.8e-08	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla ...	[more]
NDUA6_HUMAN	4.8e-08	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=...	[more]

BLAST of CmaCh04G013200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRV0_CUCSA	3.6e-63	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1	[more]
A0A061FR11_THECC	6.6e-57	81.82	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 P...	[more]
A0A067KWF8_JATCU	9.5e-56	81.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1	[more]
W9R0G7_9ROSA	2.1e-55	79.55	Uncharacterized protein OS=Morus notabilis GN=L484_023974 PE=4 SV=1	[more]
A0A0D2VQ58_GOSRA	6.2e-55	78.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1	[more]

BLAST of CmaCh04G013200 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	7.7e-49	69.23	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of CmaCh04G013200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092257\|ref\|XP_008446979.1\|	3.2e-65	93.94	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449449258\|ref\|XP_004142382.1\|	5.2e-63	91.67	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1009153610\|ref\|XP_015894726.1\|	1.9e-57	79.55	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590568839\|ref\|XP_007010910.1\|	9.5e-57	81.82	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|802574147\|ref\|XP_012068683.1\|	1.4e-55	81.06	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G013200.1	CmaCh04G013200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 49..84 score: 2.
None	No IPR available	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 2..132 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G013200	Cucsa.307830	Cucumber (Gy14) v1	cgycmaB0850
CmaCh04G013200	Cla009926	Watermelon (97103) v1	cmawmB705
CmaCh04G013200	Csa5G624440	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G013200	MELO3C012486	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G013200	ClCG05G026940	Watermelon (Charleston Gray)	cmawcgB661
CmaCh04G013200	CSPI05G27740	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G013200	CmoCh04G013920	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G013200	Lsi04G000120	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G013200	Cp4.1LG01g09770	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G013200	MELO3C012486.2	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G013200	CsaV3_5G036890	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G013200	Cla97C05G109190	Watermelon (97103) v2	cmawmbB765
CmaCh04G013200	Bhi07G001013	Wax gourd	cmawgoB0892
CmaCh04G013200	CsGy5G027170	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G013200	Carg02004	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G013200	Silver-seed gourd	carcmaB1015
CmaCh04G013200	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh04G013200	Cucumber (Gy14) v1	cgycmaB0127
CmaCh04G013200	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G013200	Cucumber (Chinese Long) v2	cmacuB726
CmaCh04G013200	Cucurbita pepo (Zucchini)	cmacpeB700