CsGy5G027170 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G027170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	Chr5 : 30845238 .. 30849053 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCCGCGAGTCTTGAAGAAGCCCGGAGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTCTTCTCGTTCCTTCAATTTACTCTATTTGCTTCTTGTTTCTATATGATTTTCGATTCTCCTTAATGGGTTTATGAGATTTTCCCTCTGTGTCGATTAGAGACGTAAGGAATTTTGAAGCTTTCTTGCCGTTCATTTGAAACGAAGCTTTATAGAAATATAAAACAAAGAAAAGAGTTTTAGAGGGCTTTGGTGCCCTAGGGGTTTTGCCATTGCAACGCAGCGGGGCGACTTTTTGAACTTGGATGATTTCTCCCTCCTTAATAGTGGGCATATTAGATAGGGTGGATAAAGTTGATGACTTGTGTTCTTTCGTCTCAACTTTTTCGTGGACAATCTATTCTATATGTTTTGTTTTTCTTGGACTCGTCCTTCTAATTATGGGAGTTGGGTATTAGTTCTTTCAGTGCTATGGTGAATTTGATGGTATGATTCTTCGGACAACCCATCAATTGCTGACTTTTTGGGAGATTTATTTCAATGGAGTTTCTTGAAGATAGGCGTGCAAGAACAAGTTTGAAAGAACCTAGGCTTAGAACTCATTTATTTACTTCTTTTGCTACTGCAATTTTACAAAAAGTTCTATTTTTCTCCTAGAAAATTTCTTGTTTTCGAGGTCTTCAGTTAGAAAGAAACCAGAGTGTAAAATCGTTATTTTGGGTCAGTTTACTCCAATTGAGGTGCCTTTTTTCAAACTCCTTGAAAGTTTTTTCTTCTGTATATTTCATTTATAGATGCACTTGGTTTCCTGTCAAATTCAATAGTGTATTAATAATTTGAACGTTTCACGAGACTACCATAATCTTAATTTGTTATGGGCCTGGTATGTGAGGGTATTTGATGAATTTGTCGATGTGTACTGTCCCTAAAAAAAATATTGTTAACGGCCTAAGAGCAAGGGGATCTTGGTAGTAAATAAGATAATTAGCTGTAAAAATCATCAATGATTTTATTTTATTCTCTTTTTTATTGTTTCCTTTTATGTATTGACTCTCCTATATTAGAAGGCTACTTATCTTGCAAATAATTTAATTTATTCTATTCAATTCTTAATGGAATCAGAGAATGTGGTCAAAGGCAAAAATACAAAATCCTGGTTTTTTTTGTCTTCATTGAAACATGTTTAGGCTTGCTTGCACCAAACTTCTTCATCTTTATCATCATTCGACTAAGAAATTGTTTTGTTGTTGATGTTTGTTGCTTGGGAGCTCATTCTCATTCTCATTTGATTTCCATCATCCTTTGTCCAATAGGGAAGCTACTTAGGTTATGACCCCCCTTTATTTATTACTGGATGGTGAGGTTAGGCAAGGGAAGAGGGACTTCCAAAGAGAAAAGGAACGCTGATGGAAATCACATTGCAAAAAGTAAATAATGGATTAAATAGAATCCTTGTTACGATTGGTGAAGATAGAAGAGGTTGGAAAGCATATCTTTCTCTTTTGTCTTCACTTCATGAAAGCCAGGTCCAGAACGAGAGGAAAGAGAACCCCCAAGAGGGCCAAGACAAAAAGCCATCCACGTACATCATACATTGCTGCTCTTAAGAAGGAAAATTTCCATATCTTTCCACCCTCTACTGAACTAGCGAATTCATCAACCACATCAAAGGCTCCATCTCCCACATCCATCAACAAATCAGCCCATGCATATCCACATTCCTCCATCCACTTTAATAGTTTGGTTGTCATTAGGAGATACTGCTTCAACGACAATTGGTACAACATTATAAGAGCTTTCAACATTCATGAGAGTGCCTGTATCAGCAATCCTTTCAACACTGACAGGGTTGCTTATCTCTGAGGATATTGATCAAACCAAAACCCTTAGTACAGTAAAGGTTTGGTATAAGGTAGGAAGATATTTGGTAAAATTCTCCCCATGGACTTGGAGTGCTGAAAATGCAACGAAAGATCAAGTTGTCCTTAGCTATGGAGGTTGGATGAAAATTAGGAACCTCCCACTTGATCGATGGGATAATGACATGCTTATGTTCATTGGAGAATCTTGTGGTGGCTTCCTTGAAATTTCCGAAAAGCCATTGAGACGACTAGATCTCTTTGAAGCTTCAAGAAGGTCAACAGAAATAATAAAGGTTTCATTCCACCTATAACCATATTCCTTCTTCTTCACATCACCGATCAAAGTACATATTGACCTCCTTTTTAATTAGGAAAACTACCTCTGCCGGAATCTGTTGTGCACCCACTTTGCCTAGTGTTCAACAGCTACTGGAGTCCAACTCGGAATCACCAATTCCAATTGGCGTAGCCCCACTAGTCTCTGCACAATCTCTACCCACAAATACCAAAACACTAAACCCATAGTTACCTGATCCTTCATGCGGTCATGCCCTCTGTCCACTTTACCTAATCCAGTTATTTTACCTGTTGCTGATCCACCAACCTACTCAATTCTCTTGTCTTAAGATCATTGAATGTACTCCTAATTCTGTTCTGACGACCTTTGGATGCTTGATAATCCACTGATGCTTCTTATCAAAAAAAAGATAATCCACTGATGCTGAGTGCTCTGTTTTTTCGAGTCTAAAACAGAGGATTCCTTTTTCGGCTTGACCTTGTGCTTATCAATCTTCTCTTCTTGTAGTCTGTTTGCATCTTCAGATAGACTCATTTTCAGCTTGCTCTGTTCTGAATACCACTTTATGTAATCATGCTTTGATTTGAAGCTCTTCAACATATTGAGAAACATTTTCCATCCCTCTTTTTCCTCACCCAATAGAATATGTAAGAATGATATTCCTTCTGTTTGGGGCCAAAAATTGCATCTTAACACCCAACCTTTCTCTAATCTGAAGCTTAAGACTTCTGTTATGCCACTGTCCATTCTTCCTTCCAGCAGAGGTGAGACCTTGATAGTGACAGGATTTTATTTGCCTCCATATCTTCAAGTTGGAATAAATCATGCTCGTGCCATATGCAGTAGGGAGAGCCAAAAACCCTGCAGCTTTCTTACTTCCATTCCTTGCTTTCTAGCCTGTAGAGCATTCTTGTTCGTCATTTGTCTTGTTTTTTCTCTTTCTTGGTTTGTTTGTTTTGGTTCAAATTCTATCTAGGGTGCTCCCTATCCGAACTTTCTAATGGTGTTGTGTTAGAATGGTCAAGGTGGATGTACGTGTGGGATACTGTGTGACCCAAACATGAGGAATTTGATAACTTTTTTTTAGTTCTTACTTAATCTCCAGGTGGAGGCTATGTTCAGAGTTTTCTCCTAATTTTCCTTTTTTAATACAATTGTTTCTCTTTCCAAAAAATGAGATGGATGGTAGCTTGTGGTAGGCCATTATTTTTGCTTGATTATTTTAATTTCCTAAGATGCTGCTCTTCTCACTGTATTGGTGTTGGACTGCGAACGTTAAGATTATTTTTATTAGTTTCCATCTCTTTTTTTTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAGCATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGCAGGTCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTCTGA

mRNA sequence

ATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCCGCGAGTCTTGAAGAAGCCCGGAGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAGCATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGCAGGTCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTCTGA

Coding sequence (CDS)

ATGGCGTTCACAGTTCGAGGTTTGAAGGTTCCGCCCAACTCCGCGAGTCTTGAAGAAGCCCGGAGTCGGGTCTTCGATTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTGGATGATGTCGCTACTGTCTCTCAACTCCGTTCTGCCATCGCCTCTGAGATCCGCAAGAATTCTCACGTCACCGACCCTAAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAGCATGCGAAGCAACGACATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTTGGTGCCAAGGATCAAGGCAGGTCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTCTGA

Protein sequence

MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRSNFLKNFYKSNYF

Homology

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BLAST of CsGy5G027170 vs. NCBI nr
Match: XP_004142382.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis sativus] >KGN52333.1 hypothetical protein Csa_5G624440 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 1.8e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQDFGAKDQGRS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CsGy5G027170 vs. NCBI nr
Match: XP_008446979.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-65
Identity = 127/132 (96.21%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDV TVSQLRS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

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BLAST of CsGy5G027170 vs. NCBI nr
Match: XP_023552714.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 4.1e-64
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDV T+SQ+RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTISQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

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BLAST of CsGy5G027170 vs. NCBI nr
Match: XP_022957489.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-63
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T SQ+RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CsGy5G027170 vs. NCBI nr
Match: XP_022985413.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 5.9e-63
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T+S +RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

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BLAST of CsGy5G027170 vs. TAIR10
Match: AT3G12260.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-50
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 3   FTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR AI+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRSNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG+++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

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BLAST of CsGy5G027170 vs. Swiss-Prot
Match: sp|Q9LHI0|NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-49
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 3   FTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR AI+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRSNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG+++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

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BLAST of CsGy5G027170 vs. Swiss-Prot
Match: sp|Q02366|NDUA6_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=9913 GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-09
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  + ++ LD   +V Q R  +    +KN+H+TDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKMELEETIKVWKQRTHVM 104

[Close]

BLAST of CsGy5G027170 vs. Swiss-Prot
Match: sp|Q9CQZ5|NDUA6_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus OX=10090 GN=Ndufa6 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-09
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  L EA+ RV + +R+  R +P  + +  LD   TV Q R  +     KN+HVTDP
Sbjct: 22  PIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLD--ITVKQGRDKVREMFMKNAHVTDP 81

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 82  RVVDLLVIKGKMELQETIKVWKQRTHVM 107

[Close]

BLAST of CsGy5G027170 vs. Swiss-Prot
Match: sp|Q0MQA4|NDUA6_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA6 PE=2 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  +  + LD   TV   R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of CsGy5G027170 vs. Swiss-Prot
Match: sp|P56556|NDUA6_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens OX=9606 GN=NDUFA6 PE=1 SV=4)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 11  PPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  +  + LD   TV   R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of CsGy5G027170 vs. TrEMBL
Match: tr|A0A0A0KRV0|A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.2e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQDFGAKDQGRS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CsGy5G027170 vs. TrEMBL
Match: tr|A0A1S3BH79|A0A1S3BH79_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489526 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 127/132 (96.21%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDV TVSQLRS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

[Close]

BLAST of CsGy5G027170 vs. TrEMBL
Match: tr|A0A2N9HW32|A0A2N9HW32_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44424 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 111/131 (84.73%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVPPNSASLEEAR RVFDFFRSACRS+P IMDIYNLDDVA++SQLRS IA+E
Sbjct: 1   MAFTLRSVKVPPNSASLEEARHRVFDFFRSACRSIPTIMDIYNLDDVASISQLRSTIAAE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSH+T+PKVIDMLLFK MEEL NITEHAKQRHHIIGQYVVGR+GLVQD G KDQG S
Sbjct: 61  IRKNSHITNPKVIDMLLFKAMEELNNITEHAKQRHHIIGQYVVGRQGLVQDLGTKDQGIS 120

Query: 121 NFLKNFYKSNY 132
           NFLK FY SNY
Sbjct: 121 NFLKKFYNSNY 131

[Close]

BLAST of CsGy5G027170 vs. TrEMBL
Match: tr|A0A2I4GZR3|A0A2I4GZR3_9ROSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Juglans regia OX=51240 GN=LOC109012302 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.2e-57
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAF++R +KVPPNSA+L EAR+RVFDFFRSACRSLP IMDIYNLDDVA VSQLRS IASE
Sbjct: 1   MAFSLRSVKVPPNSANLAEARTRVFDFFRSACRSLPTIMDIYNLDDVAKVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD G KDQG S
Sbjct: 61  IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLGTKDQGIS 120

Query: 121 NFLKNFYKSNY 132
           +FLKNFY SNY
Sbjct: 121 DFLKNFYNSNY 131

[Close]

BLAST of CsGy5G027170 vs. TrEMBL
Match: tr|A0A061FR11|A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao OX=3641 GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.5e-57
Identity = 110/132 (83.33%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRS +ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGRS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD   KD+G S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

The following BLAST results are available for this feature:

BLAST of CsGy5G027170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142382.1	1.8e-67	99.24	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis...	[more]
XP_008446979.1	1.7e-65	96.21	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis...	[more]
XP_023552714.1	4.1e-64	93.94	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo sub...	[more]
XP_022957489.1	3.5e-63	93.18	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata...	[more]
XP_022985413.1	5.9e-63	92.42	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]	[more]

BLAST of CsGy5G027170 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	1.4e-50	72.31	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of CsGy5G027170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LHI0\|NDUA6_ARATH	2.5e-49	72.31	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
sp\|Q02366\|NDUA6_BOVIN	3.4e-09	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=99...	[more]
sp\|Q9CQZ5\|NDUA6_MOUSE	3.4e-09	38.64	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus OX=...	[more]
sp\|Q0MQA4\|NDUA6_GORGO	3.7e-08	36.36	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla ...	[more]
sp\|P56556\|NDUA6_HUMAN	3.7e-08	36.36	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens OX=...	[more]

BLAST of CsGy5G027170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRV0\|A0A0A0KRV0_CUCSA	1.2e-67	99.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=4 SV=1	[more]
tr\|A0A1S3BH79\|A0A1S3BH79_CUCME	1.1e-65	96.21	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=...	[more]
tr\|A0A2N9HW32\|A0A2N9HW32_FAGSY	1.4e-57	84.73	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44424 PE=4 SV=1	[more]
tr\|A0A2I4GZR3\|A0A2I4GZR3_9ROSI	4.2e-57	85.50	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Juglans regia OX...	[more]
tr\|A0A061FR11\|A0A061FR11_THECC	5.5e-57	83.33	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao OX=3641 GN=TCM_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016488	NADH_Ub_cplx-1_asu_su-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G027170.1	CsGy5G027170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016488	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 5..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G027170	Cla009926	Watermelon (97103) v1	cgybwmB371
CsGy5G027170	Csa5G624440	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G027170	MELO3C012486	Melon (DHL92) v3.5.1	cgybmeB319
CsGy5G027170	ClCG05G026940	Watermelon (Charleston Gray)	cgybwcgB355
CsGy5G027170	CSPI05G27740	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G027170	CmaCh04G013200	Cucurbita maxima (Rimu)	cgybcmaB672
CsGy5G027170	CmoCh04G013920	Cucurbita moschata (Rifu)	cgybcmoB650
CsGy5G027170	Lsi04G000120	Bottle gourd (USVL1VR-Ls)	cgyblsiB337
CsGy5G027170	Cp4.1LG01g09770	Cucurbita pepo (Zucchini)	cgybcpeB648
CsGy5G027170	MELO3C012486.2	Melon (DHL92) v3.6.1	cgybmedB318
CsGy5G027170	CsaV3_5G036890	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G027170	Cla97C05G109190	Watermelon (97103) v2	cgybwmbB360
CsGy5G027170	Bhi07G001013	Wax gourd	cgybwgoB489
CsGy5G027170	Carg02004	Silver-seed gourd	carcgybB0831

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G027170	Cucurbita maxima (Rimu)	cgybcmaB626
CsGy5G027170	Cucurbita moschata (Rifu)	cgybcmoB603
CsGy5G027170	Cucurbita pepo (Zucchini)	cgybcpeB581
CsGy5G027170	Silver-seed gourd	carcgybB0720