Carg02004 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02004
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	Cucurbita_argyrosperma_scaffold_003 : 1654494 .. 1657730 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTTCTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTCTCTCTTTCCTGCAATTTACTGTATTTTTTTCTTATTTTTTTTGTCAATTTATATATGATTTGGGAGCGTCTTCGGGAGTTTTGTTGAATCCTTCATTTCCTTAAGTGGTGTGGATAAACTCTGGGGACTTCTTGTCTTTGTGTCTATTAGAGACGTCTGAGAAAGGATTTTTGAAGCTGTCTTTTCCATCAATTAGAAACGAAAGCTTTATAGAAATAGAAAAACGAATAAAGGTGTTTAGAGGGTTTATCTTTCTCGTTCTTGTCGTCGTTGTAAATCTATCATTATGGAGAGTTATTTTTGCCGAGTCAAATAGATATTGGTGTTCTGGCAGTTTTGCATTTGCAACGCAATCGGATGATTTCTCCCTCCTAAAGATTGGGCACATTAGATAGGGTTGAAAATGTAGATGAGTTGTGTTCTTCCGTCCCTTCACGAAGTTTTTCGTGGATAATCAATTCAATCCGTTTTTCTTTTTGGGGGCTATTCCTTCTAATTCTGGGATCAATTTTCACGGTGTATGAGCTCTTTCAGTGCATTTGATGGTAGGATTCTTTGGACAAACAATCAATTGTTGACTTTTTGGGAGAATTTTTCTCAAAGGAGTTCATTGAAGATAGGCGTGCAAATACAAGTTTGAAAGACTCTAGGCCTAGAACTCATTTAATTGCTTCTTTCTGCTGCTGCAATCTTAAAAAAATGATCTCTTTTTTGGAGTCTTCGGTTAGAAAGAAACAAGAGAGTTGAATCTTTATTTTTTGGTCAATCAACTCCAGCTCTAATTGGAGGTGCCTCTTTTTAAGTCCCTTGTGTATTGTCTCTGCTATATGTTCCATTTATCAATGCATTTTGTTATGATGCAAAAGTTTCATGATATTACCATAATCTTAAATTTCTTTGGTATGTGAGAGTATCTGATGAATCGATAGATATGCTGTCTCTAAAAAAATTATTATCAACAGCCTAAGGGCAAGGGAGAAGAGAGAACCCCCTTCTACAAAAAACTAAAGGAAAGCTTTTCAATTGATTTGGACTATGGTTAGCTATAGTTACAAAAGATAGTTGCTTGTACCTTTAATTACTAGATATAATTCATGCCTGTGCCTGCATTTTATCCATTTACTATTGTTTCATCTTTTCATCGAGTGCCGCCAATTTGTTTCCTCAAACCTTGTACTCCATGGGTTTATTGTCTTTCTTATGGTTACTATCTATTTATGGTGGAACCTATTGTTTGGTGATCTACAGTTGCTGCCAGTTGAATGTTACTTGTAAATTTGTCATTTTTGTGCTATCATCTATGTGATGGAGACATTCTCTGTGTTCATTGCTTTAGAGGTGAGTTCAAATTATTTTATAAAGACAAAACACCCGAAAAAGAATGCGATCAGCAGTTTGACTCTTGACAATTGACCATTTTCCCTTGAATTTTTTGCTGGGGACTCTTGATTTCCGAATGAAGCGTAGATGATTTTGAACATCAGAGGTTTCTAGAATATTGCACCCCGTTTGCTTACTACCACCTCTAGTAATTAAAGGTACAAGGATGTTTATTTGACAAACCCAAGGAATTAGTTTTAATATTGTGTTTCTTCTGTAAATCATTCCTTTGGTATTAACTACTTCACATCTCGAAGGCCGATCCAAACAACTTAAACCTTTTAGATACTTTGCTTCCATGGGAAATTTTAATAAACTTTGTTGGATTTTTTTTTTTTTTTCCTCCTTTTTTTGGGGAAATCACTGGCTTTACCATCCATGGCGGATCGCCAAGTGATCGTGAGGGAAAAAAAAGGAACTCCTCCAGTCGCTTCTCAACGGCAGAGTCTCATTTATGGCATGGTGTAGGGTCTAAATCTGTCAGAACTACAAGTTGTATTTTATGTGTAGAAATCTCGCTGTGTGTGGTAAATTAAGTGTAACATGTTACAGAAGCCGCTTGGTAGTAGTGTCTTTCTAGGACTGTTATTAAGAAACTGCTGGTGAAGGTTAGAAACTTAGACCAATATTTTTTAGCGGAGGTGCTCCACTTATGGTGACGGGCAGGGTATTTAGCCTCCTTTCATCCAGTTGTCTGACAATGTGAGCACTTCTGCGTATCTGTGTGTAACCATTCGAAATGCCTCAACTGTTTTTTAAAACAAGTCCGAGTCAAATAGTAATGATTCAAAGCAGCTCTTTTTGCACTATTTTGGAAACCCATGGACTCAATCTTAGGGATATGTAAAATACAGGATTTCTAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAACTGAGTAAACAGAATTTCATACTCGATCTCATAGATACATATAGAAATGTGTGTGAGTGAGAGAGAGGGAGAGAGAGATAGTGGCTTCGATCAATTGATATCTGTTGTACACCTCATGCCCCAAGTACGAAGCTTGCGGTGCACTTCGAAAATAATTTGCATTCGAGGAATGGAGGTTGTAGGTGAAGATTATTTTAATTTCTTAAGATTCTGTTCTTTACACTGTCTTGGAGTCGGACTGCGAATGTGAAGATTATTTTTGCAGTTTCTGACTTTTCAAGTTTACAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAATATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTCCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCGCTGGACAATGAACACTCCTATTTGATCGTTTTGTTGGATTGAATTGTTGGTATGTTATGGCCGCTGTATCTTTTACAGAAGCAAAGCAATCCAAGATCTTTGGTTCTATTT

mRNA sequence

AGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTTCTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAATATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTCCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCGCTGGACAATGAACACTCCTATTTGATCGTTTTGTTGGATTGAATTGTTGGTATGTTATGGCCGCTGTATCTTTTACAGAAGCAAAGCAATCCAAGATCTTTGGTTCTATTT

Coding sequence (CDS)

ATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTTCTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAATATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGA

Protein sequence

MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

Homology

[Close]

BLAST of Carg02004 vs. NCBI nr
Match: XP_022957489.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 1.8e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT+SQIRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of Carg02004 vs. NCBI nr
Match: XP_022985413.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 1.5e-66
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT S IRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of Carg02004 vs. NCBI nr
Match: XP_023552714.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 1.5e-66
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQIRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTISQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of Carg02004 vs. NCBI nr
Match: XP_008446979.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQ+RSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG+S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

[Close]

BLAST of Carg02004 vs. NCBI nr
Match: XP_004142382.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis sativus] >KGN52333.1 hypothetical protein Csa_5G624440 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.7e-62
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T SQ+RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of Carg02004 vs. TAIR10
Match: AT3G12260.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-49
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of Carg02004 vs. Swiss-Prot
Match: sp|Q9LHI0|NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.7e-48
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of Carg02004 vs. Swiss-Prot
Match: sp|Q02366|NDUA6_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=9913 GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++++ LD   +  Q R  +    +KN+H+TDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKMELEETIKVWKQRTHVM 104

[Close]

BLAST of Carg02004 vs. Swiss-Prot
Match: sp|Q9CQZ5|NDUA6_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus OX=10090 GN=Ndufa6 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDP 70
           P  S  L EA+ RV + +R+  R +P  +++  LD   T  Q R  +     KN+HVTDP
Sbjct: 22  PIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLD--ITVKQGRDKVREMFMKNAHVTDP 81

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 82  RVVDLLVIKGKMELQETIKVWKQRTHVM 107

[Close]

BLAST of Carg02004 vs. Swiss-Prot
Match: sp|Q0MQA4|NDUA6_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA6 PE=2 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of Carg02004 vs. Swiss-Prot
Match: sp|P56556|NDUA6_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens OX=9606 GN=NDUFA6 PE=1 SV=4)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of Carg02004 vs. TrEMBL
Match: tr|A0A1S3BH79|A0A1S3BH79_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489526 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 7.1e-65
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQ+RSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG+S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

[Close]

BLAST of Carg02004 vs. TrEMBL
Match: tr|A0A0A0KRV0|A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T SQ+RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of Carg02004 vs. TrEMBL
Match: tr|A0A2N9HW32|A0A2N9HW32_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44424 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.9e-57
Identity = 110/131 (83.97%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFT+R +KVPPNSASLEEAR+RVFDFFRSACRS+P IM+IYNLDDV + SQ+RSTIA+E
Sbjct: 1   MAFTLRSVKVPPNSASLEEARHRVFDFFRSACRSIPTIMDIYNLDDVASISQLRSTIAAE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSH+T+PKVIDMLLFK MEEL NITEHAKQRHHIIGQYVVGR+GLVQD+G+KDQGIS
Sbjct: 61  IRKNSHITNPKVIDMLLFKAMEELNNITEHAKQRHHIIGQYVVGRQGLVQDLGTKDQGIS 120

Query: 121 NFLKNFYKSNY 132
           NFLK FY SNY
Sbjct: 121 NFLKKFYNSNY 131

[Close]

BLAST of Carg02004 vs. TrEMBL
Match: tr|A0A061FR11|A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao OX=3641 GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.2e-57
Identity = 109/132 (82.58%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIM+IYNLDDV T+SQ+RST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD+ +KD+G+S
Sbjct: 103 IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLNTKDEGMS 162

Query: 121 NFLKNFYKSNYF 133
           +FLKNFYKSNYF
Sbjct: 163 DFLKNFYKSNYF 174

[Close]

BLAST of Carg02004 vs. TrEMBL
Match: tr|A0A2I4GZR3|A0A2I4GZR3_9ROSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Juglans regia OX=51240 GN=LOC109012302 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 110/131 (83.97%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60
           MAF++R +KVPPNSA+L EAR RVFDFFRSACRSLP IM+IYNLDDV   SQ+RSTIASE
Sbjct: 1   MAFSLRSVKVPPNSANLAEARTRVFDFFRSACRSLPTIMDIYNLDDVAKVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVT+PKVIDMLLFKGMEEL NI EHAKQRHHIIGQYVVGR+GLVQD+G+KDQGIS
Sbjct: 61  IRKNSHVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGRQGLVQDLGTKDQGIS 120

Query: 121 NFLKNFYKSNY 132
           +FLKNFY SNY
Sbjct: 121 DFLKNFYNSNY 131

The following BLAST results are available for this feature:

BLAST of Carg02004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957489.1	1.8e-67	99.24	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata...	[more]
XP_022985413.1	1.5e-66	98.48	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]	[more]
XP_023552714.1	1.5e-66	98.48	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo sub...	[more]
XP_008446979.1	1.1e-64	94.70	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis...	[more]
XP_004142382.1	1.7e-62	92.42	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis...	[more]

BLAST of Carg02004 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	2.0e-49	70.00	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Carg02004 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LHI0\|NDUA6_ARATH	3.7e-48	70.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
sp\|Q02366\|NDUA6_BOVIN	1.3e-08	34.09	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=99...	[more]
sp\|Q9CQZ5\|NDUA6_MOUSE	1.3e-08	37.50	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus OX=...	[more]
sp\|Q0MQA4\|NDUA6_GORGO	1.4e-07	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla ...	[more]
sp\|P56556\|NDUA6_HUMAN	1.4e-07	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens OX=...	[more]

BLAST of Carg02004 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BH79\|A0A1S3BH79_CUCME	7.1e-65	94.70	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=...	[more]
tr\|A0A0A0KRV0\|A0A0A0KRV0_CUCSA	1.1e-62	92.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=4 SV=1	[more]
tr\|A0A2N9HW32\|A0A2N9HW32_FAGSY	1.9e-57	83.97	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44424 PE=4 SV=1	[more]
tr\|A0A061FR11\|A0A061FR11_THECC	3.2e-57	82.58	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao OX=3641 GN=TCM_...	[more]
tr\|A0A2I4GZR3\|A0A2I4GZR3_9ROSI	1.6e-56	83.97	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Juglans regia OX...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016488	NADH_Ub_cplx-1_asu_su-6
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02004-RA	Carg02004-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 46..84 e-value: 3.0E-5 score: 23.9
IPR016488	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 5..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02004	Cla009926	Watermelon (97103) v1	carwmB0840
Carg02004	Csa5G624440	Cucumber (Chinese Long) v2	carcuB0857
Carg02004	MELO3C012486	Melon (DHL92) v3.5.1	carmeB0834
Carg02004	ClCG05G026940	Watermelon (Charleston Gray)	carwcgB0814
Carg02004	CSPI05G27740	Wild cucumber (PI 183967)	carcpiB0877
Carg02004	Cucsa.307830	Cucumber (Gy14) v1	carcgyB0969
Carg02004	CmaCh04G013200	Cucurbita maxima (Rimu)	carcmaB1170
Carg02004	CmoCh04G013920	Cucurbita moschata (Rifu)	carcmoB1138
Carg02004	Lsi04G000120	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg02004	Cp4.1LG01g09770	Cucurbita pepo (Zucchini)	carcpeB1177
Carg02004	CsGy5G027170	Cucumber (Gy14) v2	carcgybB0831
Carg02004	MELO3C012486.2	Melon (DHL92) v3.6.1	carmedB0846
Carg02004	CsaV3_5G036890	Cucumber (Chinese Long) v3	carcucB0881
Carg02004	Cla97C05G109190	Watermelon (97103) v2	carwmbB0876
Carg02004	Bhi07G001013	Wax gourd	carwgoB0984

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02004	Silver-seed gourd	carcarB591
Carg02004	Cucurbita maxima (Rimu)	carcmaB1167
Carg02004	Cucurbita moschata (Rifu)	carcmoB1135
Carg02004	Cucurbita pepo (Zucchini)	carcpeB1169