ClCG05G026950 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G026950
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	NADH dehydrogenase
Location	CG_Chr05 : 38176179 .. 38176840 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTCACGGTTCGAGGTCTGAAGGTTCCGCCGAATTCCGCGAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCACCGACCCTAAGGTCTTCTCGTTTCTGCAATTTTCTTTATTTGCGTCTTAATTCTATATGATTTTGGGGGCGGCTTAAGGAATTTTGTTGAATCTTTCATTTCTTTTATGGGTTGAGAAACTATGAAGAATATTCCCTCTGTCGATTAGAGACATCTAAGGAAGGAATTTTGAAGCTGTCTTTTCCATTCATTTGAAACGAAAGCTTTAATAGAAATAGAAAACGAAGAAAAGAGTTTAGAGGGCTTACCTTTCTCGTTCTTGTAATCAATGTAAATCTATCATTCTGGAGGGTTTTTTGTTTTTTAATTTTTAATAATAATAATAATAATAATAAAATCTTCTAGCGGGTTATTTGCTGAAGCAAATAGAAATTGGTGCCCTGGGGATTTTTCAATTGCAGTGCAGCCCGACGACTTATTGAACTTGGATAAGTTCTCTCCTAAAGAGCGGGCATATTAG

mRNA sequence

ATGGCATTCACGGTTCGAGGTCTGAAGGTTCCGCCGAATTCCGCGAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCACCGACCCTAAGCCCGACGACTTATTGAACTTGGATAAGTTCTCTCCTAAAGAGCGGGCATATTAG

Coding sequence (CDS)

ATGGCATTCACGGTTCGAGGTCTGAAGGTTCCGCCGAATTCCGCGAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCACCGACCCTAAGCCCGACGACTTATTGAACTTGGATAAGTTCTCTCCTAAAGAGCGGGCATATTAG

Protein sequence

MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVTDPKPDDLLNLDKFSPKERAY

Homology

[Close]

BLAST of ClCG05G026950 vs. Swiss-Prot
Match: NDUA6_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-21
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 3  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIR 62
          F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR
Sbjct: 5  FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63 KNSHVTDPKPDDLL 77
           N+H+TDPK  DLL
Sbjct: 65 NNAHITDPKVIDLL 78

[Close]

BLAST of ClCG05G026950 vs. TrEMBL
Match: A0A0A0KRV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.2e-31
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNSHVTDPK  D+L
Sbjct: 61 IRKNSHVTDPKVIDML 76

[Close]

BLAST of ClCG05G026950 vs. TrEMBL
Match: A0A061FR11_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKPDDLL 77
           IRKNSHVT+PK  D+L
Sbjct: 103 IRKNSHVTNPKVIDML 118

[Close]

BLAST of ClCG05G026950 vs. TrEMBL
Match: A0A0D2VQ58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAF++R +KVPPNSASLEEAR+RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+SE
Sbjct: 1  MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNSHVT+PK  DLL
Sbjct: 61 IRKNSHVTNPKVIDLL 76

[Close]

BLAST of ClCG05G026950 vs. TrEMBL
Match: A0A0B0PLZ1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03720 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFT+R +KVPPNSASLEEA++RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+S+
Sbjct: 1  MAFTLRSVKVPPNSASLEEAKSRVFDFFRQACRSIPTIMDIYNLDDVVTKSELRSSISSQ 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNSHVT+PK  DLL
Sbjct: 61 IRKNSHVTNPKVIDLL 76

[Close]

BLAST of ClCG05G026950 vs. TrEMBL
Match: A0A067KWF8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-25
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFT+R LKVPPNSASLEEAR RVFDFFR+ACRS+P IMDIYNL DV TVS+LRS+IAS+
Sbjct: 1  MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNS+VT+PK  D+L
Sbjct: 61 IRKNSNVTNPKVIDML 76

[Close]

BLAST of ClCG05G026950 vs. TAIR10
Match: AT3G12260.1 (AT3G12260.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 103.6 bits (257), Expect = 6.3e-23
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 3  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIR 62
          F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR
Sbjct: 5  FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63 KNSHVTDPKPDDLL 77
           N+H+TDPK  DLL
Sbjct: 65 NNAHITDPKVIDLL 78

[Close]

BLAST of ClCG05G026950 vs. NCBI nr
Match: gi|659092257|ref|XP_008446979.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNSHVTDPK  D+L
Sbjct: 61 IRKNSHVTDPKVIDML 76

[Close]

BLAST of ClCG05G026950 vs. NCBI nr
Match: gi|449449258|ref|XP_004142382.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNSHVTDPK  D+L
Sbjct: 61 IRKNSHVTDPKVIDML 76

[Close]

BLAST of ClCG05G026950 vs. NCBI nr
Match: gi|1009153610|ref|XP_015894726.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 59/76 (77.63%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          M+F++R +KVPPNSASLEEAR+RVFDFFR ACRS+P+++D+YNLDDV TVS+LRSTIASE
Sbjct: 1  MSFSLRSVKVPPNSASLEEARSRVFDFFREACRSIPSVIDMYNLDDVVTVSRLRSTIASE 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNSHVTDPK  D+L
Sbjct: 61 IRKNSHVTDPKVIDML 76

[Close]

BLAST of ClCG05G026950 vs. NCBI nr
Match: gi|590568839|ref|XP_007010910.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-26
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
           MAFT+R +KVP NS SLEEA+ RVFDFFRSACRS+PAIMDIYNLDDV T SQLRST+ASE
Sbjct: 43  MAFTLRSVKVPSNSVSLEEAKGRVFDFFRSACRSIPAIMDIYNLDDVVTASQLRSTVASE 102

Query: 61  IRKNSHVTDPKPDDLL 77
           IRKNSHVT+PK  D+L
Sbjct: 103 IRKNSHVTNPKVIDML 118

[Close]

BLAST of ClCG05G026950 vs. NCBI nr
Match: gi|823247658|ref|XP_012456498.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAF++R +KVPPNSASLEEAR+RVFDFFR ACRS+P IMDIYNLDDV T S+LRS+I+SE
Sbjct: 1  MAFSLRSVKVPPNSASLEEARSRVFDFFRKACRSIPTIMDIYNLDDVVTKSELRSSISSE 60

Query: 61 IRKNSHVTDPKPDDLL 77
          IRKNSHVT+PK  DLL
Sbjct: 61 IRKNSHVTNPKVIDLL 76

The following BLAST results are available for this feature:

BLAST of ClCG05G026950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUA6_ARATH	1.1e-21	66.22	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]

BLAST of ClCG05G026950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRV0_CUCSA	9.2e-31	93.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624440 PE=4 SV=1	[more]
A0A061FR11_THECC	3.1e-26	80.26	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_045026 P...	[more]
A0A0D2VQ58_GOSRA	1.2e-25	78.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G218700 PE=3 SV=1	[more]
A0A0B0PLZ1_GOSAR	2.0e-25	77.63	Uncharacterized protein OS=Gossypium arboreum GN=F383_03720 PE=3 SV=1	[more]
A0A067KWF8_JATCU	3.4e-25	78.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1	[more]

BLAST of ClCG05G026950 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12260.1	6.3e-23	66.22	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of ClCG05G026950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092257\|ref\|XP_008446979.1\|	2.7e-31	94.74	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449449258\|ref\|XP_004142382.1\|	1.3e-30	93.42	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1009153610\|ref\|XP_015894726.1\|	4.4e-26	77.63	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590568839\|ref\|XP_007010910.1\|	4.4e-26	80.26	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|823247658\|ref\|XP_012456498.1\|	1.7e-25	78.95	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G026950.1	ClCG05G026950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 2..76 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G026950	Cla009926	Watermelon (97103) v1	wcgwmB285
ClCG05G026950	Lsi04G000120	Bottle gourd (USVL1VR-Ls)	lsiwcgB291

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G026950	Wax gourd	wcgwgoB470
ClCG05G026950	Cucumber (Gy14) v1	cgywcgB531
ClCG05G026950	Cucurbita maxima (Rimu)	cmawcgB367
ClCG05G026950	Cucurbita maxima (Rimu)	cmawcgB661
ClCG05G026950	Cucurbita moschata (Rifu)	cmowcgB361
ClCG05G026950	Cucurbita moschata (Rifu)	cmowcgB662
ClCG05G026950	Wild cucumber (PI 183967)	cpiwcgB408
ClCG05G026950	Cucumber (Chinese Long) v2	cuwcgB390
ClCG05G026950	Melon (DHL92) v3.5.1	mewcgB063
ClCG05G026950	Cucurbita pepo (Zucchini)	cpewcgB042
ClCG05G026950	Cucurbita pepo (Zucchini)	cpewcgB396
ClCG05G026950	Cucumber (Gy14) v2	cgybwcgB355
ClCG05G026950	Melon (DHL92) v3.6.1	medwcgB062
ClCG05G026950	Silver-seed gourd	carwcgB0701
ClCG05G026950	Silver-seed gourd	carwcgB0814
ClCG05G026950	Cucumber (Chinese Long) v3	cucwcgB411
ClCG05G026950	Watermelon (97103) v2	wcgwmbB229