Cucsa.358920 (gene) Cucumber (Gy14) v1

NameCucsa.358920
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
Locationscaffold03588 : 13791 .. 15415 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACAAGGATAACTCACATCCAAATTTGAGCAAAAATGAGGTCAGTTGTTCTCATTTGCTTCATTTTGAGCTTAGTTGCCGGAAAATCCACAGCTGTAATAGAGGTGTCGAAGTGCTATCTCAACTGCATGGCAGTGTGTGCTGTCCCATCAAGCCTTCTCACGGTAGGCCTTTGTGCTTTAAAATGCACAGCTGATTGCATTGCCATTGCTTCTTCCCCTATGAATTTGAACCGTGTGGACACTCGTTACTTTTGTAAACTTGGTTGTGCCACCTCTTGTTGCACCAAATCCAGCACCAAGAAAGACTTTGGTCAGTAACTTTCTAATACTTCCGTTACTACTTATTTTAATTATTATATATATATATATTCTGTCATTTAGATTTTCTGTCGATTGATTCTGTGACATAACACATTATTTTTCTCAAATTTCTAGAGTTAACCCTTGTCATGAGTGACAGTCAATAAGACTGGTAGTATTTATATATTAAATTTTTATCTCATTATTTCTAGAGTTTTGATGGATGTTTCAATCATGTTGGATTATTTTTTATGAACTTGGCAGCCGAGAAGAAAGTAGAAAGCTGTGTGAACACGTGTGATCAAATATGCATGAAAGCTTAAGAAGCCAAAAAGATGAAAGGAGAAAGAGCTGGGATTGGCTTCAATGAATAAACAAAAATCAGTGGTTAAAAAAAAACCATTGGTTTAAAAGCCATATTCCAAATTTAAGCGCATATATATATATATAGTCTCAAGGTTGTTCACGTTATGCTTTACTCAATATGAAAAAAAATACGGTTGTAGTGCTTTTTCTATGATTATATGAGAAAATGAAGTGTTATGCTTTACTTTTACCAATGTCTATTCATTAATTACATATTTAAGTGTGTGTGTTTGAAGTGGTGTTGTAATTAAGAGATATATAATTAATAATCTCACAATCATATACTTTATTTATTCTATTAAAATCCTACCAGAATTAATCTAACACAATATTAGAAAACCTAAAGAGAGGTCATCTTTGATCACATAGACTAAAAAAATATAGTCATTAGTTCCTAGAAAGACGGTGTTAATTTTTCTTCTATTGAAGTATTATACGAAACCTATTTGGGTTTGTCGTCAAGTAGTTGATATGTGCCTTTGTACCCCTACTTATCTATATCTTCCCAT

mRNA sequence

CACACAAGGATAACTCACATCCAAATTTGAGCAAAAATGAGGTCAGTTGTTCTCATTTGCTTCATTTTGAGCTTAGTTGCCGGAAAATCCACAGCTGTAATAGAGGTGTCGAAGTGCTATCTCAACTGCATGGCAGTGTGTGCTGTCCCATCAAGCCTTCTCACGGTAGGCCTTTGTGCTTTAAAATGCACAGCTGATTGCATTGCCATTGCTTCTTCCCCTATGAATTTGAACCGTGTGGACACTCGTTACTTTTGTAAACTTGGTTGTGCCACCTCTTGTTGCACCAAATCCAGCACCAAGAAAGACTTTGCCGAGAAGAAAGTAGAAAGCTGTGTGAACACGTGTGATCAAATATGCATGAAAGCTTAAGAAGCCAAAAAGATGAAAGGAGAAAGAGCTGGGATTGGCTTCAATGAATAAACAAAAATCAGTGGTTAAAAAAAAACCATTGGTTTAAAAGCCATATTCCAAATTTAAGCGCATATATATATATATAGTCTCAAGGTTGTTCACGTTATGCTTTACTCAATATGAAAAAAAATACGGTTGTAGTGCTTTTTCTATGATTATATGAGAAAATGAAGTGTTATGCTTTACTTTTACCAATGTCTATTCATTAATTACATATTTAAGTGTGTGTGTTTGAAGTGGTGTTGTAATTAAGAGATATATAATTAATAATCTCACAATCATATACTTTATTTATTCTATTAAAATCCTACCAGAATTAATCTAACACAATATTAGAAAACCTAAAGAGAGGTCATCTTTGATCACATAGACTAAAAAAATATAGTCATTAGTTCCTAGAAAGACGGTGTTAATTTTTCTTCTATTGAAGTATTATACGAAACCTATTTGGGTTTGTCGTCAAGTAGTTGATATGTGCCTTTGTACCCCTACTTATCTATATCTTCCCAT

Coding sequence (CDS)

ATGAGGTCAGTTGTTCTCATTTGCTTCATTTTGAGCTTAGTTGCCGGAAAATCCACAGCTGTAATAGAGGTGTCGAAGTGCTATCTCAACTGCATGGCAGTGTGTGCTGTCCCATCAAGCCTTCTCACGGTAGGCCTTTGTGCTTTAAAATGCACAGCTGATTGCATTGCCATTGCTTCTTCCCCTATGAATTTGAACCGTGTGGACACTCGTTACTTTTGTAAACTTGGTTGTGCCACCTCTTGTTGCACCAAATCCAGCACCAAGAAAGACTTTGCCGAGAAGAAAGTAGAAAGCTGTGTGAACACGTGTGATCAAATATGCATGAAAGCTTAA

Protein sequence

MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIASSPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMKA*
BLAST of Cucsa.358920 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-10
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 1

Query: 3   SVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIASSP 62
           +V+++  I +L+A  +   I   +CY  C+  C   S       C   CT +C+   S P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 63  -MNLNRV-DTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMK 111
            ++ N + ++ YFCKLGCAT  C   S+ ++   ++V +CV++C   C K
Sbjct: 64  SVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of Cucsa.358920 vs. TrEMBL
Match: A0A0A0KC18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-26
Identity = 64/103 (62.14%), Postives = 73/103 (70.87%), Query Frame = 1

Query: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60
           M+SVVLICFILSLVAG+STA     KCY  C  VCA+   +  VG C  KC ADC+ IAS
Sbjct: 1   MKSVVLICFILSLVAGRSTA--SFGKCYAKCFIVCAITPGI-PVGTCGAKCLADCLFIAS 60

Query: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNT 104
           SPM+LN +DT YFCKLGCATS CTK STKKD  +K   + V T
Sbjct: 61  SPMDLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTT 100

BLAST of Cucsa.358920 vs. TrEMBL
Match: V4ULM8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-18
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 3   SVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIASSP 62
           S++++C +L L+ G+STA  +   CY  C   C +    L    CA KC  DC+  ASS 
Sbjct: 9   SLLIVCLVLGLLVGQSTASFK--DCYKICFISCVIGGKNLVK--CAAKCLKDCVLPASSV 68

Query: 63  MNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMK 111
           +N N  D + FCKLGCA+S CT  STK+D AE+KVESCVN+C + C K
Sbjct: 69  LNSN--DAQGFCKLGCASSLCTNLSTKEDPAEEKVESCVNSCSKTCTK 110

BLAST of Cucsa.358920 vs. TrEMBL
Match: A0A067ECA0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037489mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-18
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 3   SVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIASSP 62
           S++++C +L L+ G+STA  +   CY  C   C +    L    CA KC  DC+  ASS 
Sbjct: 9   SLLIVCLVLGLLVGQSTASFK--DCYKICFISCVIGGKNLIK--CAAKCLKDCVLPASSV 68

Query: 63  MNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMK 111
           +NLN     +FCKLGCA++ CT  STK+D AE+KVESCVN+C + C K
Sbjct: 69  LNLNDAQG-FFCKLGCASTLCTNLSTKEDPAEEKVESCVNSCSKTCTK 111

BLAST of Cucsa.358920 vs. TrEMBL
Match: F6HX25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-17
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 1

Query: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60
           +R++V++  ++ ++ G+STA  +   CY  C   C +  +  T   C+L+C  DC+ I S
Sbjct: 6   IRALVMVGLVMGMLVGQSTASFK--DCYTKCFIFCIITPNN-TAFSCSLECLKDCV-IPS 65

Query: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQIC 109
            P+++   DT YFCKLGCA+S CT  STKK+ A +KVESCVN+C   C
Sbjct: 66  HPLDIETADTTYFCKLGCASSLCTNLSTKKNPAGEKVESCVNSCSNKC 109

BLAST of Cucsa.358920 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 1

Query: 3   SVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCA-VPSSLLTVGLCALKCTADCIAIASS 62
           SV+++C +L L+ G+STA  +  KCY  C  +C  +P +   V  CA+KC  +CI I SS
Sbjct: 47  SVMMVCLVLGLLVGQSTASFQ--KCYAGCFLLCVFIPPN--PVFSCAIKCLNECI-IPSS 106

Query: 63  PMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMK 111
            +   + DT+YFCKLGCATS CT  S+K++  E+KV SCV++C + C K
Sbjct: 107 TLESGK-DTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCAK 149

BLAST of Cucsa.358920 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-11
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 1

Query: 3   SVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIASSP 62
           +V+++  I +L+A  +   I   +CY  C+  C   S       C   CT +C+   S P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 63  -MNLNRV-DTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMK 111
            ++ N + ++ YFCKLGCAT  C   S+ ++   ++V +CV++C   C K
Sbjct: 64  SVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of Cucsa.358920 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 3.6e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60
           MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS
Sbjct: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60

Query: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMKA 112
           SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMKA
Sbjct: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMKA 111

BLAST of Cucsa.358920 vs. NCBI nr
Match: gi|659131068|ref|XP_008465492.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 1

Query: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60
           MRS+VLI FILSLVAG+ST V++ +K ++ CMA CA+   +  V +CA+KC ADCI +AS
Sbjct: 1   MRSIVLIHFILSLVAGRSTPVLDTAKWFVKCMAECAILPIIPVVSICAVKCMADCIPVAS 60

Query: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMKA 112
           SPM+LNR+DT YFCKLGC T  CTK STKKD AEKKVES VNTCDQ CMKA
Sbjct: 61  SPMDLNRMDTHYFCKLGCTTYRCTKLSTKKDLAEKKVESGVNTCDQTCMKA 111

BLAST of Cucsa.358920 vs. NCBI nr
Match: gi|700190113|gb|KGN45346.1| (hypothetical protein Csa_7G446640 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 64/103 (62.14%), Postives = 73/103 (70.87%), Query Frame = 1

Query: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60
           M+SVVLICFILSLVAG+STA     KCY  C  VCA+   +  VG C  KC ADC+ IAS
Sbjct: 1   MKSVVLICFILSLVAGRSTA--SFGKCYAKCFIVCAITPGI-PVGTCGAKCLADCLFIAS 60

Query: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNT 104
           SPM+LN +DT YFCKLGCATS CTK STKKD  +K   + V T
Sbjct: 61  SPMDLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTT 100

BLAST of Cucsa.358920 vs. NCBI nr
Match: gi|567868875|ref|XP_006427059.1| (hypothetical protein CICLE_v10027058mg [Citrus clementina])

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-18
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 3   SVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIASSP 62
           S++++C +L L+ G+STA  +   CY  C   C +    L    CA KC  DC+  ASS 
Sbjct: 9   SLLIVCLVLGLLVGQSTASFK--DCYKICFISCVIGGKNLVK--CAAKCLKDCVLPASSV 68

Query: 63  MNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMK 111
           +N N  D + FCKLGCA+S CT  STK+D AE+KVESCVN+C + C K
Sbjct: 69  LNSN--DAQGFCKLGCASSLCTNLSTKEDPAEEKVESCVNSCSKTCTK 110

BLAST of Cucsa.358920 vs. NCBI nr
Match: gi|641829732|gb|KDO48842.1| (hypothetical protein CISIN_1g037489mg [Citrus sinensis])

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-18
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 3   SVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIASSP 62
           S++++C +L L+ G+STA  +   CY  C   C +    L    CA KC  DC+  ASS 
Sbjct: 9   SLLIVCLVLGLLVGQSTASFK--DCYKICFISCVIGGKNLIK--CAAKCLKDCVLPASSV 68

Query: 63  MNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMK 111
           +NLN     +FCKLGCA++ CT  STK+D AE+KVESCVN+C + C K
Sbjct: 69  LNLNDAQG-FFCKLGCASTLCTNLSTKEDPAEEKVESCVNSCSKTCTK 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
THNL2_ARATH9.6e-1030.91Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KC18_CUCSA8.7e-2662.14Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1[more]
V4ULM8_9ROSI2.3e-1847.22Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1[more]
A0A067ECA0_CITSI3.9e-1846.30Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037489mg PE=4 SV=1[more]
F6HX25_VITVI3.3e-1742.59Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=... [more]
A0A061GI20_THECC4.3e-1745.87To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
Match NameE-valueIdentityDescription
AT1G12663.15.4e-1130.91 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
Match NameE-valueIdentityDescription
gi|449470525|ref|XP_004152967.1|3.6e-57100.00PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|659131068|ref|XP_008465492.1|1.3e-3567.57PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|700190113|gb|KGN45346.1|1.3e-2562.14hypothetical protein Csa_7G446640 [Cucumis sativus][more]
gi|567868875|ref|XP_006427059.1|3.3e-1847.22hypothetical protein CICLE_v10027058mg [Citrus clementina][more]
gi|641829732|gb|KDO48842.1|5.6e-1846.30hypothetical protein CISIN_1g037489mg [Citrus sinensis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.358920.2Cucsa.358920.2mRNA
Cucsa.358920.1Cucsa.358920.1mRNA