CmaCh17G008190 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTCAATTGTTCTAATTTGCTTCATTCTGAGCTTAGTGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTATGCCAAGTGCTTCGTAGTGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCTGCCCCAATGGATTTCAACCATATGGACACACATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCTTGTGAGCAAAATTTCCTGTACCCATTTCTTCGTTTCTTATTTTTCAAACATGTTTTCATTTTGTGTTATGAACTTGGCAGCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCCTGCGCTGGAACATGCATCAAAGCTTAGAAACATGAAGAAGGGAGGAGGAGCTGGGATTGGCCTTAACACCATCAATAAATAAACATATTTTGGTGTATGCATGGTTTCAAGTCTCTGCCCGTGTTATGTGAACCATATGCCTTAAATGTTTAAAAACTTATTAGACACAAAATTTGATCTCAAAGTTTGAGGGGCCAAGAGCTCTAAAC ATGAAGTCAATTGTTCTAATTTGCTTCATTCTGAGCTTAGTGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTATGCCAAGTGCTTCGTAGTGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCTGCCCCAATGGATTTCAACCATATGGACACACATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCTTCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCCTGCGCTGGAACATGCATCAAAGCTTAGAAACATGAAGAAGGGAGGAGGAGCTGGGATTGGCCTTAACACCATCAATAAATAAACATATTTTGGTGTATGCATGGTTTCAAGTCTCTGCCCGTGTTATGTGAACCATATGCCTTAAATGTTTAAAAACTTATTAGACACAAAATTTGATCTCAAAGTTTGAGGGGCCAAGAGCTCTAAAC ATGAAGTCAATTGTTCTAATTTGCTTCATTCTGAGCTTAGTGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTATGCCAAGTGCTTCGTAGTGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCTGCCCCAATGGATTTCAACCATATGGACACACATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCTTCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCCTGCGCTGGAACATGCATCAAAGCTTAG MKSIVLICFILSLVAGRSTASFRKCYAKCFVVCAITPGITLGTCGATCLAKCLFIASAPMDFNHMDTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIKA
BLAST of CmaCh17G008190 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.6e-09 Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
BLAST of CmaCh17G008190 vs. TrEMBL
Match: A0A0A0KC18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 6.6e-39 Identity = 78/92 (84.78%), Postives = 84/92 (91.30%), Query Frame = 1
BLAST of CmaCh17G008190 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 6.7e-23 Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 1
BLAST of CmaCh17G008190 vs. TrEMBL
Match: F6HX25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 8.7e-23 Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 1
BLAST of CmaCh17G008190 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 2.5e-22 Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 1
BLAST of CmaCh17G008190 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.3e-22 Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 1
BLAST of CmaCh17G008190 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 63.5 bits (153), Expect = 8.9e-11 Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
BLAST of CmaCh17G008190 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein) HSP 1 Score: 53.5 bits (127), Expect = 9.2e-08 Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 1
BLAST of CmaCh17G008190 vs. NCBI nr
Match: gi|700190113|gb|KGN45346.1| (hypothetical protein Csa_7G446640 [Cucumis sativus]) HSP 1 Score: 167.9 bits (424), Expect = 9.5e-39 Identity = 78/92 (84.78%), Postives = 84/92 (91.30%), Query Frame = 1
BLAST of CmaCh17G008190 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus]) HSP 1 Score: 132.5 bits (332), Expect = 4.4e-28 Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 1
BLAST of CmaCh17G008190 vs. NCBI nr
Match: gi|659131068|ref|XP_008465492.1| (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 121.7 bits (304), Expect = 7.8e-25 Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 1
BLAST of CmaCh17G008190 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis]) HSP 1 Score: 114.8 bits (286), Expect = 9.6e-23 Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 1
BLAST of CmaCh17G008190 vs. NCBI nr
Match: gi|225442677|ref|XP_002284798.1| (PREDICTED: thionin-like protein 2 [Vitis vinifera]) HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22 Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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