Carg18817 (gene) Silver-seed gourd

NameCarg18817
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_123 : 392828 .. 393473 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCTGATTGCCTCTTCCCTGCCTCTGCCCCTACAGATCTCAACCATTTGGACACTCATTATTTCTGCAAACTTGGCTGTGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGGTGGGTTACAAAATTTTTAATACTCTCCTAATATTTGAAAATTTTTTATTGTTAGTATCATTTTTAAATAGCGATTAACGTGTTTATAGCTAACTTTCCTACACGCTTTTGACAATGTTTTTAATGAATTTGGCAGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAAAACTGAGAAGGAGCTGGGATTGGCTTTAAAGACAATAAGTGTCGGTGGTGAAAACCAAACACCATTGGACTCTAAGCTTGTCCCATATCTACTAAGCATGTTTTGATATATCTATATGCTTTCTAGTTTCTGCATGTACTCGTCCTCATCACTGTCTAATAATCAAGGTTGCTTTTCCATGCT

mRNA sequence

ATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCTGATTGCCTCTTCCCTGCCTCTGCCCCTACAGATCTCAACCATTTGGACACTCATTATTTCTGCAAACTTGGCTGTGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAAAACTGAGAAGGAGCTGGGATTGGCTTTAAAGACAATAAGTGTCGGTGGTGAAAACCAAACACCATTGGACTCTAAGCTTGTCCCATATCTACTAAGCATGTTTTGATATATCTATATGCTTTCTAGTTTCTGCATGTACTCGTCCTCATCACTGTCTAATAATCAAGGTTGCTTTTCCATGCT

Coding sequence (CDS)

ATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCTGATTGCCTCTTCCCTGCCTCTGCCCCTACAGATCTCAACCATTTGGACACTCATTATTTCTGCAAACTTGGCTGTGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAA

Protein sequence

MKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFPASAPTDLNHLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLKA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038975THNL
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18817-RACarg18817-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038975Thionin-like proteinPANTHERPTHR36312FAMILY NOT NAMEDcoord: 3..107
NoneNo IPR availablePANTHERPTHR36312:SF1THIONIN-LIKE PROTEIN 1-RELATEDcoord: 3..107

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18817Carg09545Silver-seed gourdcarcarB596