MELO3C023363 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023363
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	thionin 2.2
Location	chr1 : 33623758 .. 33624676 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGAGATATCAATAAGAAAGAAAAATTGTTAAAGAGAAGGCTTTTCATTTAGATCCTCCATCTTCTTCATCAATTCATCAATAAAAACATCAATAAAGATGGAGAGCAGCAATGTTATGGCAATGAAATGTGGTTTGATTGTTTGGCTATTCCTCAGCTCGCTCTCCATCGCTGATTCCTTCATCGACGAACCCACTCCTCTTGGGAACTGCTTCAAATCTTGCTTAGCCGAATGCGTCGTCAATAAGAAAACCGCTCGCCTATTGTGCCCGTTCAAATGCACTAAAATTTGCGTGGCCGACCCGTCGACCACCCATTTCAAATTCGTAAAGGTCGACAATTACTCGTCATGCGAGCTCCAGTGCGCAGCTTCTATGTGTGGCGAGTTTAGCACGAAGGAAAATCCAGGTCCAGAAAAATCTACGCTACTCCTTTTATTTCCCTTTTTTGTTAGGTTTCATTTGCTAATAAATTTAGAGTTTCTTAAGAGTTATTTGAAATACCGATTATACTAAGACTATAATAACCACATCTTGCTAAGTAATTAATTTATACTATTTTGTTATCTTGTTCCATTAGCTTCAATCTAATACTAATTTCTTATTTTGAATACCTTTTAATGAACACAATTTTTCTTTCTTTTTTTTTTTGGGTAAGATTAAGTTTTTTGGTTGATATATACTCAATTAGTTATTTAGTTTTATTTGTTTTCGTTGATGCAGATGAAAAAGAAGTGGAGAAGTGTGTGAAGTCTTGCGATCAAACATGTTCTATTGAGATCAAATGATGTGATAGTGGATCGATCTCCTAAATGAAAAGTCTTTTAACCTTTACTTTTTTTCCAATATTTAAAAACAAGTCAATTTTGTATGAAATATATGTATTGATTTATTGATTTATTATCAACGAAACTTCATT

mRNA sequence

AGGGAGATATCAATAAGAAAGAAAAATTGTTAAAGAGAAGGCTTTTCATTTAGATCCTCCATCTTCTTCATCAATTCATCAATAAAAACATCAATAAAGATGGAGAGCAGCAATGTTATGGCAATGAAATGTGGTTTGATTGTTTGGCTATTCCTCAGCTCGCTCTCCATCGCTGATTCCTTCATCGACGAACCCACTCCTCTTGGGAACTGCTTCAAATCTTGCTTAGCCGAATGCGTCGTCAATAAGAAAACCGCTCGCCTATTGTGCCCGTTCAAATGCACTAAAATTTGCGTGGCCGACCCGTCGACCACCCATTTCAAATTCGTAAAGGTCGACAATTACTCGTCATGCGAGCTCCAGTGCGCAGCTTCTATGTGTGGCGAGTTTAGCACGAAGGAAAATCCAGATGAAAAAGAAGTGGAGAAGTGTGTGAAGTCTTGCGATCAAACATGTTCTATTGAGATCAAATGATGTGATAGTGGATCGATCTCCTAAATGAAAAGTCTTTTAACCTTTACTTTTTTTCCAATATTTAAAAACAAGTCAATTTTGTATGAAATATATGTATTGATTTATTGATTTATTATCAACGAAACTTCATT

Coding sequence (CDS)

ATGGAGAGCAGCAATGTTATGGCAATGAAATGTGGTTTGATTGTTTGGCTATTCCTCAGCTCGCTCTCCATCGCTGATTCCTTCATCGACGAACCCACTCCTCTTGGGAACTGCTTCAAATCTTGCTTAGCCGAATGCGTCGTCAATAAGAAAACCGCTCGCCTATTGTGCCCGTTCAAATGCACTAAAATTTGCGTGGCCGACCCGTCGACCACCCATTTCAAATTCGTAAAGGTCGACAATTACTCGTCATGCGAGCTCCAGTGCGCAGCTTCTATGTGTGGCGAGTTTAGCACGAAGGAAAATCCAGATGAAAAAGAAGTGGAGAAGTGTGTGAAGTCTTGCGATCAAACATGTTCTATTGAGATCAAATGA

Protein sequence

MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFKCTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEKEVEKCVKSCDQTCSIEIK*

Homology

[Close]

BLAST of MELO3C023363 vs. TrEMBL
Match: A0A0A0KC12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G440620 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 75/121 (61.98%), Postives = 86/121 (71.07%), Query Frame = 1


Query: 1   MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK 60
           MESSNVMA+KCGLIV LFLSSLSIA SF D+ T +  CFKSCL  C+ +KK+ R LCP K
Sbjct: 1   MESSNVMAIKCGLIVCLFLSSLSIAHSFFDDKTQVEICFKSCLNVCLYDKKSIRFLCPLK 60

Query: 61  CTKICVADPSTTHFKFVKVDNYSSCELQCAASMC-GEFSTKENPDEKEVEKCVKSCDQTC 120
           CTKICVADP T +F+ +     SSCEL CA S C    ST +  DEKE+ KCV SC Q C
Sbjct: 61  CTKICVADPWTKNFQALLTKKDSSCELDCATSKCTNSISTNDIIDEKEMGKCVDSCTQKC 120

[Close]

BLAST of MELO3C023363 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-16
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1


Query: 5   NVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFKCTKI 64
           NV+A K  L+ WL L+SLS A+S     T    C+ +C   C +    A   CP +C + 
Sbjct: 3   NVLAKKWALMAWLLLTSLSTANS-----TSFQECYATCFVICAITPGVAFSDCPLRCLQA 62

Query: 65  CVA------DPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEKEVEKCVKSCDQT 122
           C+       D    H +  +  N+  C+L CAAS C +FSTK+NP E++V +CV SC QT
Sbjct: 63  CIVPSFPIDDADVVHRQ--QQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQT 118

[Close]

BLAST of MELO3C023363 vs. TrEMBL
Match: A0A0D2S001_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G099200 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 1


Query: 34  PLGNCFKSCLAECVVNKKTARLLCPFKCTKICVADPSTTHFKFVKVDNYSSCELQCAASM 93
           P G C+ SC A C +    +   C  +C K C+   ST     VK D  S C+L CA+++
Sbjct: 30  PFGICYASCFATCTLGGGGSPAPCSLQCLKNCLLTKSTVGGGTVK-DTLSFCKLGCASAL 89

Query: 94  CGEFSTKENPDEKEVEKCVKSCDQTCS 121
           C  FST +NP   +V  CV  C  TC+
Sbjct: 90  CSNFSTSDNPASNKVGNCVDGCSATCA 115

[Close]

BLAST of MELO3C023363 vs. TrEMBL
Match: V4ST34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027568mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-09
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 38  CFKSCLAECVVNKKTARLLCPFKCTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEF 97
           C+++CL  C++  K+  L CP KCTK C     T      + D +  C+L CA+S+C  F
Sbjct: 32  CYRNCLDACMIAHKSL-LYCPLKCTKKCAFGVHT------RKDTHFFCKLGCASSLCINF 91

Query: 98  STKENPDEKEVEKCVKSCDQTCSIEIK 125
            +K+NP E + E C+ SC +TC+   K
Sbjct: 92  VSKDNPAEDKWESCLGSCSKTCTKNYK 111

[Close]

BLAST of MELO3C023363 vs. TrEMBL
Match: A0A067ED52_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047200mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-09
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 38  CFKSCLAECVVNKKTARLLCPFKCTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEF 97
           C+++CL  C++  K+  L CP KCTK C     T      + D +  C+L CA+S+C  F
Sbjct: 32  CYRNCLDACMIAHKSL-LYCPLKCTKKCAFGVHT------RKDTHFFCKLGCASSLCINF 91

Query: 98  STKENPDEKEVEKCVKSCDQTCSIEIK 125
            +K+NP E + E C+ SC +TC+   K
Sbjct: 92  VSKDNPAEDKWESCLGSCSKTCTKNYK 111

[Close]

BLAST of MELO3C023363 vs. NCBI nr
Match: gi|659122245|ref|XP_008461040.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 4.3e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK 60
           MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK
Sbjct: 1   MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK 60

Query: 61  CTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEKEVEKCVKSCDQTCS 120
           CTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEKEVEKCVKSCDQTCS
Sbjct: 61  CTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEKEVEKCVKSCDQTCS 120

Query: 121 IEIK 125
           IEIK
Sbjct: 121 IEIK 124

[Close]

BLAST of MELO3C023363 vs. NCBI nr
Match: gi|700190108|gb|KGN45341.1| (hypothetical protein Csa_7G440620 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-32
Identity = 75/121 (61.98%), Postives = 86/121 (71.07%), Query Frame = 1


Query: 1   MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK 60
           MESSNVMA+KCGLIV LFLSSLSIA SF D+ T +  CFKSCL  C+ +KK+ R LCP K
Sbjct: 1   MESSNVMAIKCGLIVCLFLSSLSIAHSFFDDKTQVEICFKSCLNVCLYDKKSIRFLCPLK 60

Query: 61  CTKICVADPSTTHFKFVKVDNYSSCELQCAASMC-GEFSTKENPDEKEVEKCVKSCDQTC 120
           CTKICVADP T +F+ +     SSCEL CA S C    ST +  DEKE+ KCV SC Q C
Sbjct: 61  CTKICVADPWTKNFQALLTKKDSSCELDCATSKCTNSISTNDIIDEKEMGKCVDSCTQKC 120

[Close]

BLAST of MELO3C023363 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1


Query: 5   NVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFKCTKI 64
           N++A K  L+ WL L+SLS A+S     T    C+ +C   C +    A   CP +C + 
Sbjct: 3   NILAKKWALMAWLLLTSLSTANS-----TSFQECYATCFVICAITPGVAFSDCPLRCLQA 62

Query: 65  CVA------DPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEKEVEKCVKSCDQT 123
           C+       D    H +  K  N+  C+L CAAS C +FSTK+NP E++VE+CV SC QT
Sbjct: 63  CIVPSFPIDDDDVVHRQ--KQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQT 119

[Close]

BLAST of MELO3C023363 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-16
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1


Query: 5   NVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFKCTKI 64
           NV+A K  L+ WL L+SLS A+S     T    C+ +C   C +    A   CP +C + 
Sbjct: 3   NVLAKKWALMAWLLLTSLSTANS-----TSFQECYATCFVICAITPGVAFSDCPLRCLQA 62

Query: 65  CVA------DPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEKEVEKCVKSCDQT 122
           C+       D    H +  +  N+  C+L CAAS C +FSTK+NP E++V +CV SC QT
Sbjct: 63  CIVPSFPIDDADVVHRQ--QQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQT 118

[Close]

BLAST of MELO3C023363 vs. NCBI nr
Match: gi|729396734|ref|XP_010553497.1| (PREDICTED: thionin-like protein 2 [Tarenaya hassleriana])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 31  EPTPLGNCFKSCLAECVVNKKTARLLCPFKCTKICVADP---STTHFKFVKVDNYSSCEL 90
           E   L  C+K C   C + KK    +CPF C K C+  P   S T  + + +  +  C+L
Sbjct: 22  EADSLVECYKGCFVVCAMQKKWQAFVCPFTCLKDCLQPPTFSSLTPSQNMDLTQHL-CQL 81

Query: 91  QCAASMCGEFSTKENPDEKEVEKCVKSCDQTCS 121
            CA+S C   S+ +NP+EK+VE C+ SC +TC+
Sbjct: 82  SCASSRCISLSSLQNPNEKKVETCLNSCSETCT 113

The following BLAST results are available for this feature:

BLAST of MELO3C023363 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC12_CUCSA	1.4e-32	61.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G440620 PE=4 SV=1	[more]
A0A0A0K781_CUCSA	4.1e-16	39.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1	[more]
A0A0D2S001_GOSRA	2.2e-09	37.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G099200 PE=4 SV=1	[more]
V4ST34_9ROSI	3.7e-09	37.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027568mg PE=4 SV=1	[more]
A0A067ED52_CITSI	3.7e-09	37.93	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047200mg PE=4 SV=1	[more]

BLAST of MELO3C023363 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122245\|ref\|XP_008461040.1\|	4.3e-67	100.00	PREDICTED: thionin-like protein 2 [Cucumis melo]	[more]
gi\|700190108\|gb\|KGN45341.1\|	2.0e-32	61.98	hypothetical protein Csa_7G440620 [Cucumis sativus]	[more]
gi\|659122243\|ref\|XP_008461039.1\|	2.4e-17	39.52	PREDICTED: thionin-like protein 2 [Cucumis melo]	[more]
gi\|778729254\|ref\|XP_011659556.1\|	5.9e-16	39.02	PREDICTED: thionin-like protein 2 [Cucumis sativus]	[more]
gi\|729396734\|ref\|XP_010553497.1\|	1.7e-10	37.63	PREDICTED: thionin-like protein 2 [Tarenaya hassleriana]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023363T1	MELO3C023363T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023363	Csa7G440620	Cucumber (Chinese Long) v2	cumeB521
MELO3C023363	Cla015424	Watermelon (97103) v1	mewmB198
MELO3C023363	ClCG09G002230	Watermelon (Charleston Gray)	mewcgB174
MELO3C023363	Bhi09G000096	Wax gourd	mewgoB239
MELO3C023363	CSPI07G21170	Wild cucumber (PI 183967)	cpimeB525
MELO3C023363	Cucsa.358920	Cucumber (Gy14) v1	cgymeB579
MELO3C023363	CmaCh08G006800	Cucurbita maxima (Rimu)	cmameB827
MELO3C023363	CmoCh08G006440	Cucurbita moschata (Rifu)	cmomeB811
MELO3C023363	Lsi02G027670	Bottle gourd (USVL1VR-Ls)	lsimeB185
MELO3C023363	CsGy7G019460	Cucumber (Gy14) v2	cgybmeB457
MELO3C023363	Carg18817	Silver-seed gourd	carmeB0741
MELO3C023363	Carg09546	Silver-seed gourd	carmeB0996
MELO3C023363	CsaV3_7G033040	Cucumber (Chinese Long) v3	cucmeB537

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023363	Wax gourd	mewgoB209
MELO3C023363	Melon (DHL92) v3.5.1	memeB084
MELO3C023363	Cucurbita maxima (Rimu)	cmameB221
MELO3C023363	Cucurbita maxima (Rimu)	cmameB326
MELO3C023363	Cucurbita maxima (Rimu)	cmameB402
MELO3C023363	Cucurbita moschata (Rifu)	cmomeB205
MELO3C023363	Cucurbita moschata (Rifu)	cmomeB318
MELO3C023363	Cucurbita moschata (Rifu)	cmomeB393
MELO3C023363	Watermelon (Charleston Gray)	mewcgB220
MELO3C023363	Watermelon (97103) v1	mewmB229
MELO3C023363	Cucurbita pepo (Zucchini)	cpemeB123
MELO3C023363	Cucurbita pepo (Zucchini)	cpemeB501
MELO3C023363	Bottle gourd (USVL1VR-Ls)	lsimeB430
MELO3C023363	Cucumber (Gy14) v2	cgybmeB161
MELO3C023363	Silver-seed gourd	carmeB0121
MELO3C023363	Silver-seed gourd	carmeB0198
MELO3C023363	Cucumber (Chinese Long) v3	cucmeB191
MELO3C023363	Watermelon (97103) v2	mewmbB203
MELO3C023363	Watermelon (97103) v2	mewmbB222