CmoCh08G006440 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCTTAATCTTACTAAATCACTCGAAATCATTTCTTACCTCATTTTTATTTTAAATAATTTTCGATTCTGCGTTAGATTTTGACAATATGCCATCAGGGGTAAAATAGTCATTTTCTAAAAGTATAGACGGCCAAAGGATTTGAGTCGACCGTAGTAATTCTCTCAATCATTTTCTTAAATCGTCAATGCTTAATCATTTGCGTTTCCACAAGGGAAGTGTTTATTTAAGAAACACTCTTTCCCACAGCCTCAAACCACAGAAAGCAAGAAAAATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCCGATTGCCTCTTCCTTGCCTCTGCCCCTAGAGATCTCAACCGTTTGGACACTCATTATTTCTGCAAACTTGGCTGCGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGGTGGGTTAGAAAATTTTTAATACTCTCGTAATATTTGAAATTTTTTTATTGTTAGTATCATTTTTAAATAGCGATTAACGTGTTTATAGCTAACTTTCCTACACGCTTTTGACAATGTTTTTAATGAATTTGGCAGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAAAACTGAGGAGCTGGGACTGGCTTTAAAGACAATAAGTGTCGGTGGTGAAGACCAAACACCATTGGACTCTAAGCTTGTCCCATATCTACTAAGCATGTTTTGATATATCTATATGCTTTCTAGTTTCTGCATGTACTCGTCCTCGTCCTCGTCGTCACTGTGTAATAATCAAGGTTGCTTTTCGTTGCTATAGTACTGGGAATGATGTTTGGTGATATTTAGATTAGCTCACGATCAAAACTTCATTTATTCTACCCAATATGATTTCATGTCTAGTTAAAATCACATCAGTTAATAATTAGTACGACGGCAGAAAAATTTAATGGTACAACAACATACAACATACGTTGTATAAAACAGTTCCTTTCGGGGTTCATTGCTCAAATCCACAGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTCCAGCTAGAAGAGGTTTCCACACCCTTATAAACAATGATTCGTTCTCCTTTCCAATCAATATGGGATATCACAATCTACCCCCTTCG TGCTTAATCTTACTAAATCACTCGAAATCATTTCTTACCTCATTTTTATTTTAAATAATTTTCGATTCTGCGTTAGATTTTGACAATATGCCATCAGGGGTAAAATAGTCATTTTCTAAAAGTATAGACGGCCAAAGGATTTGAGTCGACCGTAGTAATTCTCTCAATCATTTTCTTAAATCGTCAATGCTTAATCATTTGCGTTTCCACAAGGGAAGTGTTTATTTAAGAAACACTCTTTCCCACAGCCTCAAACCACAGAAAGCAAGAAAAATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCCGATTGCCTCTTCCTTGCCTCTGCCCCTAGAGATCTCAACCGTTTGGACACTCATTATTTCTGCAAACTTGGCTGCGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAAAACTGAGGAGCTGGGACTGGCTTTAAAGACAATAAGTGTCGGTGGTGAAGACCAAACACCATTGGACTCTAAGCTTGTCCCATATCTACTAAGCATGTTTTGATATATCTATATGCTTTCTAGTTTCTGCATGTACTCGTCCTCGTCCTCGTCGTCACTGTGTAATAATCAAGGTTGCTTTTCGTTGCTATAGTACTGGGAATGATGTTTGGTGATATTTAGATTAGCTCACGATCAAAACTTCATTTATTCTACCCAATATGATTTCATGTCTAGTTAAAATCACATCAGTTAATAATTAGTACGACGGCAGAAAAATTTAATGGTACAACAACATACAACATACGTTGTATAAAACAGTTCCTTTCGGGGTTCATTGCTCAAATCCACAGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTCCAGCTAGAAGAGGTTTCCACACCCTTATAAACAATGATTCGTTCTCCTTTCCAATCAATATGGGATATCACAATCTACCCCCTTCG ATGCTTAATCATTTGCGTTTCCACAAGGGAAGTGTTTATTTAAGAAACACTCTTTCCCACAGCCTCAAACCACAGAAAGCAAGAAAAATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCCGATTGCCTCTTCCTTGCCTCTGCCCCTAGAGATCTCAACCGTTTGGACACTCATTATTTCTGCAAACTTGGCTGCGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAA
BLAST of CmoCh08G006440 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08 Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1
BLAST of CmoCh08G006440 vs. TrEMBL
Match: A0A0A0KC18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 6.9e-41 Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 1
BLAST of CmoCh08G006440 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 6.3e-26 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1
BLAST of CmoCh08G006440 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 6.3e-26 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1
BLAST of CmoCh08G006440 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 1.8e-25 Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 1
BLAST of CmoCh08G006440 vs. TrEMBL
Match: V4ULM8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 4.1e-25 Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = 1
BLAST of CmoCh08G006440 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 60.8 bits (146), Expect = 7.3e-10 Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1
BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|700190113|gb|KGN45346.1| (hypothetical protein Csa_7G446640 [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 9.9e-41 Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 1
BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus]) HSP 1 Score: 142.1 bits (357), Expect = 7.1e-31 Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1
BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|659131068|ref|XP_008465492.1| (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28 Identity = 69/111 (62.16%), Postives = 82/111 (73.87%), Query Frame = 1
BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|568822290|ref|XP_006465567.1| (PREDICTED: thionin-like protein 2 [Citrus sinensis]) HSP 1 Score: 126.3 bits (316), Expect = 4.0e-26 Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|567868869|ref|XP_006427056.1| (hypothetical protein CICLE_v10026803mg [Citrus clementina]) HSP 1 Score: 125.2 bits (313), Expect = 9.0e-26 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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