CmoCh08G006440 (gene) Cucurbita moschata (Rifu)

NameCmoCh08G006440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
LocationCmo_Chr08 : 4186331 .. 4187578 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTTAATCTTACTAAATCACTCGAAATCATTTCTTACCTCATTTTTATTTTAAATAATTTTCGATTCTGCGTTAGATTTTGACAATATGCCATCAGGGGTAAAATAGTCATTTTCTAAAAGTATAGACGGCCAAAGGATTTGAGTCGACCGTAGTAATTCTCTCAATCATTTTCTTAAATCGTCAATGCTTAATCATTTGCGTTTCCACAAGGGAAGTGTTTATTTAAGAAACACTCTTTCCCACAGCCTCAAACCACAGAAAGCAAGAAAAATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCCGATTGCCTCTTCCTTGCCTCTGCCCCTAGAGATCTCAACCGTTTGGACACTCATTATTTCTGCAAACTTGGCTGCGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGGTGGGTTAGAAAATTTTTAATACTCTCGTAATATTTGAAATTTTTTTATTGTTAGTATCATTTTTAAATAGCGATTAACGTGTTTATAGCTAACTTTCCTACACGCTTTTGACAATGTTTTTAATGAATTTGGCAGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAAAACTGAGGAGCTGGGACTGGCTTTAAAGACAATAAGTGTCGGTGGTGAAGACCAAACACCATTGGACTCTAAGCTTGTCCCATATCTACTAAGCATGTTTTGATATATCTATATGCTTTCTAGTTTCTGCATGTACTCGTCCTCGTCCTCGTCGTCACTGTGTAATAATCAAGGTTGCTTTTCGTTGCTATAGTACTGGGAATGATGTTTGGTGATATTTAGATTAGCTCACGATCAAAACTTCATTTATTCTACCCAATATGATTTCATGTCTAGTTAAAATCACATCAGTTAATAATTAGTACGACGGCAGAAAAATTTAATGGTACAACAACATACAACATACGTTGTATAAAACAGTTCCTTTCGGGGTTCATTGCTCAAATCCACAGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTCCAGCTAGAAGAGGTTTCCACACCCTTATAAACAATGATTCGTTCTCCTTTCCAATCAATATGGGATATCACAATCTACCCCCTTCG

mRNA sequence

TGCTTAATCTTACTAAATCACTCGAAATCATTTCTTACCTCATTTTTATTTTAAATAATTTTCGATTCTGCGTTAGATTTTGACAATATGCCATCAGGGGTAAAATAGTCATTTTCTAAAAGTATAGACGGCCAAAGGATTTGAGTCGACCGTAGTAATTCTCTCAATCATTTTCTTAAATCGTCAATGCTTAATCATTTGCGTTTCCACAAGGGAAGTGTTTATTTAAGAAACACTCTTTCCCACAGCCTCAAACCACAGAAAGCAAGAAAAATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCCGATTGCCTCTTCCTTGCCTCTGCCCCTAGAGATCTCAACCGTTTGGACACTCATTATTTCTGCAAACTTGGCTGCGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAAAACTGAGGAGCTGGGACTGGCTTTAAAGACAATAAGTGTCGGTGGTGAAGACCAAACACCATTGGACTCTAAGCTTGTCCCATATCTACTAAGCATGTTTTGATATATCTATATGCTTTCTAGTTTCTGCATGTACTCGTCCTCGTCCTCGTCGTCACTGTGTAATAATCAAGGTTGCTTTTCGTTGCTATAGTACTGGGAATGATGTTTGGTGATATTTAGATTAGCTCACGATCAAAACTTCATTTATTCTACCCAATATGATTTCATGTCTAGTTAAAATCACATCAGTTAATAATTAGTACGACGGCAGAAAAATTTAATGGTACAACAACATACAACATACGTTGTATAAAACAGTTCCTTTCGGGGTTCATTGCTCAAATCCACAGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTCCAGCTAGAAGAGGTTTCCACACCCTTATAAACAATGATTCGTTCTCCTTTCCAATCAATATGGGATATCACAATCTACCCCCTTCG

Coding sequence (CDS)

ATGCTTAATCATTTGCGTTTCCACAAGGGAAGTGTTTATTTAAGAAACACTCTTTCCCACAGCCTCAAACCACAGAAAGCAAGAAAAATGAAGTCCATTGTTGTAATATGCTTCATTCTGAGCTTAGTTGCAGGCAGGTCCACAGCCTCCTTTGGGAAGTGCTACGCCAAGTGCTTCATTGTGTGTGCTATCACACCAGGCGTCCCTATTGGCACATGCGGCGGAAAGTGCTTGGCCGATTGCCTCTTCCTTGCCTCTGCCCCTAGAGATCTCAACCGTTTGGACACTCATTATTTCTGCAAACTTGGCTGCGCCACTTCTCTCTGCACCAAATTTAGCACCAAGACAGACCCGGCTGAGAAGAAAGTGGAAAGTTGTGTGAACTCGTGCTCTCGAACATGTTTGAAGGCTTAA
BLAST of CmoCh08G006440 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1

Query: 32  SIVVICFILSLVAGRSTAS--FGKCYAKCFIVCAITPGVP-IGTCGGKCLADCLFLASAP 91
           +++++  I +L+A  +     F +CY  C + C      P    C   C  +CL   S P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 92  R-DLNRLD-THYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLK 137
               N +D + YFCKLGCAT  C   S+  +P  ++V +CV+SCS  C K
Sbjct: 64  SVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of CmoCh08G006440 vs. TrEMBL
Match: A0A0A0KC18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.9e-41
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 1

Query: 30  MKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASAPR 89
           MKS+V+ICFILSLVAGRSTASFGKCYAKCFIVCAITPG+P+GTCG KCLADCLF+AS+P 
Sbjct: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60

Query: 90  DLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCS 132
           DLN +DTHYFCKLGCATS CTKFSTK DP +K   + V + S
Sbjct: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYS 102

BLAST of CmoCh08G006440 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.3e-26
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1

Query: 28  RKMKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASA 87
           RK+ S++++  +  L+ G+S A+F +CY  CFI+C ITPG  +G+C  KCL DC+F    
Sbjct: 4   RKVGSLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPKL 63

Query: 88  PRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLK 137
              L+  DT YFCKLGCATSLCT  S+K +PA +KVE CVNSCS++C K
Sbjct: 64  -HTLSLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSK 111

BLAST of CmoCh08G006440 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.3e-26
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1

Query: 28  RKMKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASA 87
           RK+ S++++  +  L+ G+S A+F +CY  CFI+C ITPG  +G+C  KCL DC+F    
Sbjct: 4   RKVGSLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPKL 63

Query: 88  PRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLK 137
              L+  DT YFCKLGCATSLCT  S+K +PA +KVE CVNSCS++C K
Sbjct: 64  -HTLSLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSK 111

BLAST of CmoCh08G006440 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-25
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 1

Query: 9   KGSVYLRNTLSHSLKPQK--ARKMKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITP 68
           K  +YL + L    K +K   R + S++++C +L L+ G+STASF KCYA CF++C   P
Sbjct: 22  KFQLYLSSPLQSKGKRRKMEGRGVGSVMMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIP 81

Query: 69  GVPIGTCGGKCLADCLFLASAPRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESC 128
             P+ +C  KCL +C+  +S     +  DT YFCKLGCATSLCT  S+K +P E+KV SC
Sbjct: 82  PNPVFSCAIKCLNECIIPSSTLE--SGKDTQYFCKLGCATSLCTDLSSKENPGEQKVGSC 141

Query: 129 VNSCSRTCLK 137
           V+SCS TC K
Sbjct: 142 VDSCSETCAK 149

BLAST of CmoCh08G006440 vs. TrEMBL
Match: V4ULM8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.1e-25
Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = 1

Query: 25  QKARKMKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFL 84
           +K+R   S++++C +L L+ G+STASF  CY  CFI C I  G  +  C  KCL DC+  
Sbjct: 2   EKSRVDSSLLIVCLVLGLLVGQSTASFKDCYKICFISCVIG-GKNLVKCAAKCLKDCVLP 61

Query: 85  ASAPRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLK 137
           AS+   LN  D   FCKLGCA+SLCT  STK DPAE+KVESCVNSCS+TC K
Sbjct: 62  ASSV--LNSNDAQGFCKLGCASSLCTNLSTKEDPAEEKVESCVNSCSKTCTK 110

BLAST of CmoCh08G006440 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-10
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1

Query: 32  SIVVICFILSLVAGRSTAS--FGKCYAKCFIVCAITPGVP-IGTCGGKCLADCLFLASAP 91
           +++++  I +L+A  +     F +CY  C + C      P    C   C  +CL   S P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 92  R-DLNRLD-THYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLK 137
               N +D + YFCKLGCAT  C   S+  +P  ++V +CV+SCS  C K
Sbjct: 64  SVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|700190113|gb|KGN45346.1| (hypothetical protein Csa_7G446640 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 9.9e-41
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 1

Query: 30  MKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASAPR 89
           MKS+V+ICFILSLVAGRSTASFGKCYAKCFIVCAITPG+P+GTCG KCLADCLF+AS+P 
Sbjct: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60

Query: 90  DLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCS 132
           DLN +DTHYFCKLGCATS CTKFSTK DP +K   + V + S
Sbjct: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYS 102

BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 7.1e-31
Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1

Query: 30  MKSIVVICFILSLVAGRSTA--SFGKCYAKCFIVCAITPGV-PIGTCGGKCLADCLFLAS 89
           M+S+V+ICFILSLVAG+STA     KCY  C  VCA+   +  +G C  KC ADC+ +AS
Sbjct: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60

Query: 90  APRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLKA 138
           +P +LNR+DT YFCKLGCATS CTK STK D AEKKVESCVN+C + C+KA
Sbjct: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMKA 111

BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|659131068|ref|XP_008465492.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 69/111 (62.16%), Postives = 82/111 (73.87%), Query Frame = 1

Query: 30  MKSIVVICFILSLVAGRSTASF--GKCYAKCFIVCAITPGVPI-GTCGGKCLADCLFLAS 89
           M+SIV+I FILSLVAGRST      K + KC   CAI P +P+   C  KC+ADC+ +AS
Sbjct: 1   MRSIVLIHFILSLVAGRSTPVLDTAKWFVKCMAECAILPIIPVVSICAVKCMADCIPVAS 60

Query: 90  APRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLKA 138
           +P DLNR+DTHYFCKLGC T  CTK STK D AEKKVES VN+C +TC+KA
Sbjct: 61  SPMDLNRMDTHYFCKLGCTTYRCTKLSTKKDLAEKKVESGVNTCDQTCMKA 111

BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|568822290|ref|XP_006465567.1| (PREDICTED: thionin-like protein 2 [Citrus sinensis])

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-26
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 1

Query: 28  RKMKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASA 87
           RK++S++++  +  L+ G+S A+F +CY  CFI+C ITPG  +G+C  KCL DC+F    
Sbjct: 4   RKVESLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPKL 63

Query: 88  PRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLK 137
              L+  DT YFCKLGCATSLCT  S+K +PA +KVE CVNSCS++C K
Sbjct: 64  -HTLSLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSK 111

BLAST of CmoCh08G006440 vs. NCBI nr
Match: gi|567868869|ref|XP_006427056.1| (hypothetical protein CICLE_v10026803mg [Citrus clementina])

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-26
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1

Query: 28  RKMKSIVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASA 87
           RK+ S++++  +  L+ G+S A+F +CY  CFI+C ITPG  +G+C  KCL DC+F    
Sbjct: 4   RKVGSLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPKL 63

Query: 88  PRDLNRLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTCLK 137
              L+  DT YFCKLGCATSLCT  S+K +PA +KVE CVNSCS++C K
Sbjct: 64  -HTLSLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSK 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
THNL2_ARATH1.3e-0833.64Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KC18_CUCSA6.9e-4178.43Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1[more]
V4ST32_9ROSI6.3e-2652.29Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1[more]
A0A067E0U5_CITSI6.3e-2652.29Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1[more]
A0A061GI20_THECC1.8e-2547.69To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
V4ULM8_9ROSI4.1e-2555.36Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12663.17.3e-1033.64 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
Match NameE-valueIdentityDescription
gi|700190113|gb|KGN45346.1|9.9e-4178.43hypothetical protein Csa_7G446640 [Cucumis sativus][more]
gi|449470525|ref|XP_004152967.1|7.1e-3162.16PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|659131068|ref|XP_008465492.1|1.1e-2862.16PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|568822290|ref|XP_006465567.1|4.0e-2652.29PREDICTED: thionin-like protein 2 [Citrus sinensis][more]
gi|567868869|ref|XP_006427056.1|9.0e-2652.29hypothetical protein CICLE_v10026803mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006440.1CmoCh08G006440.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36312FAMILY NOT NAMEDcoord: 25..134
score: 1.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G006440CmoCh17G007880Cucurbita moschata (Rifu)cmocmoB320