Csa7G446640 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G446640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionThionin-like protein 1
LocationChr7 : 17616753 .. 17617199 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCAGTTGTTCTAATTTGTTTCATTTTGAGCTTAGTTGCAGGAAGATCCACAGCCTCATTTGGGAAGTGCTACGCCAAGTGCTTTATAGTGTGTGCTATCACACCAGGCATTCCCGTTGGCACTTGTGGGGCAAAATGCTTGGCTGATTGCCTTTTCATTGCTTCTTCCCCTATGGATTTGAATTATATGGACACTCATTACTTTTGTAAACTTGGTTGTGCCACTTCTCGTTGCACCAAATTCAGCACCAAGAAAGACCCTGGTAAGAAACTTTCTAATACTTCCGTTACCACGTATTCTAGTTATACAAATGTTTATAGAGAGACATTTAGATTTTTCATCGTTTGATTTTAAATGTTGTTGACCGTAAAAGTCACATTAATGTATGTAAATAATTTTCTATACTATTATATTCTATTAGGGAATTAATGTTTTCAACCC

mRNA sequence

ATGAAGTCAGTTGTTCTAATTTGTTTCATTTTGAGCTTAGTTGCAGGAAGATCCACAGCCTCATTTGGGAAGTGCTACGCCAAGTGCTTTATAGTGTGTGCTATCACACCAGGCATTCCCGTTGGCACTTGTGGGGCAAAATGCTTGGCTGATTGCCTTTTCATTGCTTCTTCCCCTATGGATTTGAATTATATGGACACTCATTACTTTTGTAAACTTGGTTGTGCCACTTCTCGTTGCACCAAATTCAGCACCAAGAAAGACCCTGGTAAGAAACTTTCTAATACTTCCGTTACCACGTATTCTAGTTATACAAATGTTTATAGAGAGACATTTAGATTTTTCATCGTTTGA

Coding sequence (CDS)

ATGAAGTCAGTTGTTCTAATTTGTTTCATTTTGAGCTTAGTTGCAGGAAGATCCACAGCCTCATTTGGGAAGTGCTACGCCAAGTGCTTTATAGTGTGTGCTATCACACCAGGCATTCCCGTTGGCACTTGTGGGGCAAAATGCTTGGCTGATTGCCTTTTCATTGCTTCTTCCCCTATGGATTTGAATTATATGGACACTCATTACTTTTGTAAACTTGGTTGTGCCACTTCTCGTTGCACCAAATTCAGCACCAAGAAAGACCCTGGTAAGAAACTTTCTAATACTTCCGTTACCACGTATTCTAGTTATACAAATGTTTATAGAGAGACATTTAGATTTTTCATCGTTTGA

Protein sequence

MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPMDLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVYRETFRFFIV*
Homology
[Close]
BLAST of Csa7G446640 vs. TrEMBL
Match: A0A0A0KC18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.6e-62
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60
           MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM
Sbjct: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60

Query: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVYRETFRFFIV 118
           DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVYRETFRFFIV
Sbjct: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVYRETFRFFIV 117

[Close]
BLAST of Csa7G446640 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1 

Query: 3   SVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPMDL 62
           SV+++C +L L+ G+STASF KCYA CF++C   P  PV +C  KCL +C+ I SS ++ 
Sbjct: 47  SVMMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECI-IPSSTLE- 106

Query: 63  NYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYS 103
           +  DT YFCKLGCATS CT  S+K++PG++   + V + S
Sbjct: 107 SGKDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCS 144

[Close]
BLAST of Csa7G446640 vs. TrEMBL
Match: F6HX25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 1 

Query: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60
           ++++V++  ++ ++ G+STASF  CY KCFI C ITP     +C  +CL DC+ I S P+
Sbjct: 6   IRALVMVGLVMGMLVGQSTASFKDCYTKCFIFCIITPNNTAFSCSLECLKDCV-IPSHPL 65

Query: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVY 109
           D+   DT YFCKLGCA+S CT  STKK+P  +   + V + S+    Y
Sbjct: 66  DIETADTTYFCKLGCASSLCTNLSTKKNPAGEKVESCVNSCSNKCTEY 112

[Close]
BLAST of Csa7G446640 vs. TrEMBL
Match: A5AWP0_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_004511 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1 

Query: 1  MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60
          ++++V++  ++ ++ G+STASF  CY KCFI C ITP     +C  +CL DC+ I S P+
Sbjct: 6  IRALVMVGLVMGMLVGQSTASFKDCYTKCFIFCIITPNNTAFSCSLECLKDCV-IPSHPL 65

Query: 61 DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKK 93
          D+   DT YFCKLGCA+  CT  STKK+PG++
Sbjct: 66 DIETADTTYFCKLGCASXLCTNLSTKKNPGRE 96

[Close]
BLAST of Csa7G446640 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 1  MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60
          +KSV ++C +L L  G+S A+F  CY  CFI+CAITPG  + +C  +CL DC+   S  +
Sbjct: 4  VKSVFMVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDSL 63

Query: 61 DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKK 93
           L   DT YFCKLGCA+S CT  STK +P +K
Sbjct: 64 SLR--DTMYFCKLGCASSLCTNLSTKDNPREK 93

[Close]
BLAST of Csa7G446640 vs. NCBI nr
Match: gi|700190113|gb|KGN45346.1| (hypothetical protein Csa_7G446640 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 2.3e-62
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60
           MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM
Sbjct: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60

Query: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVYRETFRFFIV 118
           DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVYRETFRFFIV
Sbjct: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVYRETFRFFIV 117

[Close]
BLAST of Csa7G446640 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 64/103 (62.14%), Postives = 73/103 (70.87%), Query Frame = 1 

Query: 1   MKSVVLICFILSLVAGRSTA--SFGKCYAKCFIVCAITPGI-PVGTCGAKCLADCLFIAS 60
           M+SVVLICFILSLVAG+STA     KCY  C  VCA+   +  VG C  KC ADC+ IAS
Sbjct: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60

Query: 61  SPMDLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTT 101
           SPM+LN +DT YFCKLGCATS CTK STKKD  +K   + V T
Sbjct: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNT 103

[Close]
BLAST of Csa7G446640 vs. NCBI nr
Match: gi|659131068|ref|XP_008465492.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 64/103 (62.14%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 1   MKSVVLICFILSLVAGRSTASF--GKCYAKCFIVCAITPGIPV-GTCGAKCLADCLFIAS 60
           M+S+VLI FILSLVAGRST      K + KC   CAI P IPV   C  KC+ADC+ +AS
Sbjct: 1   MRSIVLIHFILSLVAGRSTPVLDTAKWFVKCMAECAILPIIPVVSICAVKCMADCIPVAS 60

Query: 61  SPMDLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTT 101
           SPMDLN MDTHYFCKLGC T RCTK STKKD  +K   + V T
Sbjct: 61  SPMDLNRMDTHYFCKLGCTTYRCTKLSTKKDLAEKKVESGVNT 103

[Close]
BLAST of Csa7G446640 vs. NCBI nr
Match: gi|590618512|ref|XP_007024067.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1 

Query: 3   SVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPMDL 62
           SV+++C +L L+ G+STASF KCYA CF++C   P  PV +C  KCL +C+ I SS ++ 
Sbjct: 47  SVMMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECI-IPSSTLE- 106

Query: 63  NYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYS 103
           +  DT YFCKLGCATS CT  S+K++PG++   + V + S
Sbjct: 107 SGKDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCS 144

[Close]
BLAST of Csa7G446640 vs. NCBI nr
Match: gi|225442677|ref|XP_002284798.1| (PREDICTED: thionin-like protein 2 [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 1 

Query: 1   MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60
           ++++V++  ++ ++ G+STASF  CY KCFI C ITP     +C  +CL DC+ I S P+
Sbjct: 6   IRALVMVGLVMGMLVGQSTASFKDCYTKCFIFCIITPNNTAFSCSLECLKDCV-IPSHPL 65

Query: 61  DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKKLSNTSVTTYSSYTNVY 109
           D+   DT YFCKLGCA+S CT  STKK+P  +   + V + S+    Y
Sbjct: 66  DIETADTTYFCKLGCASSLCTNLSTKKNPAGEKVESCVNSCSNKCTEY 112

The following BLAST results are available for this feature:
BLAST of Csa7G446640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC18_CUCSA1.6e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1[more]
A0A061GI20_THECC1.7e-1949.00To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
F6HX25_VITVI2.2e-1943.52Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=... [more]
A5AWP0_VITVI2.9e-1947.83Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_004511 P... [more]
A0A059AI82_EUCGR1.4e-1850.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1[more]
BLAST of Csa7G446640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190113|gb|KGN45346.1|2.3e-62100.00hypothetical protein Csa_7G446640 [Cucumis sativus][more]
gi|449470525|ref|XP_004152967.1|1.3e-2562.14PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|659131068|ref|XP_008465492.1|2.3e-2562.14PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|590618512|ref|XP_007024067.1|2.4e-1949.00To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
gi|225442677|ref|XP_002284798.1|3.1e-1943.52PREDICTED: thionin-like protein 2 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G446640.1Csa7G446640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G446640Cla015424Watermelon (97103) v1cuwmB566
Csa7G446640ClCG09G002220Watermelon (Charleston Gray)cuwcgB524
Csa7G446640Cla97C09G164370Watermelon (97103) v2cuwmbB570
Csa7G446640CSPI07G21190Wild cucumber (PI 183967)cpicuB354
Csa7G446640Cucsa.358920Cucumber (Gy14) v1cgycuB508
Csa7G446640CmaCh17G008190Cucurbita maxima (Rimu)cmacuB388
Csa7G446640CmaCh08G006800Cucurbita maxima (Rimu)cmacuB915
Csa7G446640CmoCh17G007880Cucurbita moschata (Rifu)cmocuB378
Csa7G446640CmoCh08G006440Cucurbita moschata (Rifu)cmocuB901
Csa7G446640Cp4.1LG12g07950Cucurbita pepo (Zucchini)cpecuB161
Csa7G446640Carg18817Silver-seed gourdcarcuB0763
Csa7G446640Carg09545Silver-seed gourdcarcuB1041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G446640Watermelon (97103) v2cuwmbB548
Csa7G446640Wax gourdcuwgoB660
Csa7G446640Wax gourdcuwgoB690
Csa7G446640Wax gourdcuwgoB712
Csa7G446640Cucurbita maxima (Rimu)cmacuB081
Csa7G446640Cucurbita maxima (Rimu)cmacuB150
Csa7G446640Cucurbita maxima (Rimu)cmacuB275
Csa7G446640Cucurbita maxima (Rimu)cmacuB497
Csa7G446640Cucurbita moschata (Rifu)cmocuB072
Csa7G446640Cucurbita moschata (Rifu)cmocuB136
Csa7G446640Cucurbita moschata (Rifu)cmocuB263
Csa7G446640Cucurbita moschata (Rifu)cmocuB486
Csa7G446640Melon (DHL92) v3.5.1cumeB521
Csa7G446640Melon (DHL92) v3.5.1cumeB552
Csa7G446640Watermelon (Charleston Gray)cuwcgB564
Csa7G446640Watermelon (97103) v1cuwmB585
Csa7G446640Cucurbita pepo (Zucchini)cpecuB378
Csa7G446640Cucurbita pepo (Zucchini)cpecuB588
Csa7G446640Cucurbita pepo (Zucchini)cpecuB700
Csa7G446640Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G446640Bottle gourd (USVL1VR-Ls)culsiB532
Csa7G446640Cucumber (Gy14) v2cgybcuB154
Csa7G446640Cucumber (Gy14) v2cgybcuB323
Csa7G446640Melon (DHL92) v3.6.1cumedB501
Csa7G446640Melon (DHL92) v3.6.1cumedB529
Csa7G446640Silver-seed gourdcarcuB0143
Csa7G446640Silver-seed gourdcarcuB0130
Csa7G446640Silver-seed gourdcarcuB0229