CmoCh17G007880 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G007880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
LocationCmo_Chr17 : 7584254 .. 7584973 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCCTACTGCTTATTTTCCACAAGCCAAGTGGTTATTTAAGAACAACCACTCTTCCCCAAAGCTTCACATTGAAGAGTGAGTGAAAATGAAGTCAGTTGTTATAATTTGCTTCATTCTGAGCTTAATGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTACGCCAAGTGCTTCATAGCGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCAGTCCCAATGAATTTCAACCATATGAACACTCATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCATGTGAGCAAAATTTCCTGTACCCATTTCTTCGTTTCTTATTTTTCAAACATGTTTTCATTTTGTGTTCTTATGAACTTGGCAGCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCGTGCGCTGGAACATGCATCAAAGCTTAGAATGCAGAAACATGAAGAAGGGAGGAGAAGGAGCTGGGATTGGCCTTAACACCATCAATAAATAAACATAATTTGGTGTATGCATGGTTTCATGGTTTCAAGTTTGTGCATGATATATGAGAATGATGTGTTACCTGGAACCATAAAAACTTATTAGATACAAAATTAAAAGTTTTAAAAATCTATTAAAATTTGATCTCAACGTTGAGAGACTAAACAAAGC

mRNA sequence

TTTTCCTACTGCTTATTTTCCACAAGCCAAGTGGTTATTTAAGAACAACCACTCTTCCCCAAAGCTTCACATTGAAGAGTGAGTGAAAATGAAGTCAGTTGTTATAATTTGCTTCATTCTGAGCTTAATGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTACGCCAAGTGCTTCATAGCGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCAGTCCCAATGAATTTCAACCATATGAACACTCATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCATCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCGTGCGCTGGAACATGCATCAAAGCTTAGAATGCAGAAACATGAAGAAGGGAGGAGAAGGAGCTGGGATTGGCCTTAACACCATCAATAAATAAACATAATTTGGTGTATGCATGGTTTCATGGTTTCAAGTTTGTGCATGATATATGAGAATGATGTGTTACCTGGAACCATAAAAACTTATTAGATACAAAATTAAAAGTTTTAAAAATCTATTAAAATTTGATCTCAACGTTGAGAGACTAAACAAAGC

Coding sequence (CDS)

ATGAAGTCAGTTGTTATAATTTGCTTCATTCTGAGCTTAATGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTACGCCAAGTGCTTCATAGCGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCAGTCCCAATGAATTTCAACCATATGAACACTCATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCATCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCGTGCGCTGGAACATGCATCAAAGCTTAG
BLAST of CmoCh17G007880 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-09
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1

Query: 3   SVVIICFILSLMAGRSTAS--FRKCYAKCFIAC-AITPGITLGTCGATCLAKCLFIASVP 62
           +V+I+  I +L+A  +     F++CY  C + C A +       C  TC  +CL   S P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 63  -MNFNHMN-THYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIK 108
            ++ N+++ + YFCKLGCAT  C   S+  +P+ ++V  CVDSC+  C K
Sbjct: 64  SVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of CmoCh17G007880 vs. TrEMBL
Match: A0A0A0KC18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-36
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 1

Query: 1  MKSVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPM 60
          MKSVV+ICFILSL+AGRSTASF KCYAKCFI CAITPGI +GTCGA CLA CLFIAS PM
Sbjct: 1  MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60

Query: 61 NFNHMNTHYFCKLGCATSMCTKFSTKNDPSEK 93
          + N+M+THYFCKLGCATS CTKFSTK DP +K
Sbjct: 61 DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKK 92

BLAST of CmoCh17G007880 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-22
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1

Query: 1   MKSVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPM 60
           +KSV ++C +L L  G+S A+F+ CY  CFI CAITPG TL +C   CL  C+   S  +
Sbjct: 4   VKSVFMVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDSL 63

Query: 61  NFNHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTC 106
           +    +T YFCKLGCA+S+CT  STK++P EK+V  CV+SC+ TC
Sbjct: 64  SLR--DTMYFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTC 106

BLAST of CmoCh17G007880 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 1

Query: 3   SVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPMNF 62
           S++++  +  L+ G+S A+F++CY  CFI C ITPG TLG+C A CL  C+F   +    
Sbjct: 8   SLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPKL-HTL 67

Query: 63  NHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIK 108
           +  +T YFCKLGCATS+CT  S+K++P+ +KVE CV+SC+ +C K
Sbjct: 68  SLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSK 111

BLAST of CmoCh17G007880 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 1

Query: 3   SVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPMNF 62
           S++++  +  L+ G+S A+F++CY  CFI C ITPG TLG+C A CL  C+F   +    
Sbjct: 8   SLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPKL-HTL 67

Query: 63  NHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIK 108
           +  +T YFCKLGCATS+CT  S+K++P+ +KVE CV+SC+ +C K
Sbjct: 68  SLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSK 111

BLAST of CmoCh17G007880 vs. TrEMBL
Match: V4ULM8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1

Query: 3   SVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPMNF 62
           S++I+C +L L+ G+STASF+ CY  CFI+C I  G  L  C A CL  C+  AS  +N 
Sbjct: 9   SLLIVCLVLGLLVGQSTASFKDCYKICFISCVIG-GKNLVKCAAKCLKDCVLPASSVLNS 68

Query: 63  NHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIK 108
           N  +   FCKLGCA+S+CT  STK DP+E+KVE CV+SC+ TC K
Sbjct: 69  N--DAQGFCKLGCASSLCTNLSTKEDPAEEKVESCVNSCSKTCTK 110

BLAST of CmoCh17G007880 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1

Query: 3   SVVIICFILSLMAGRSTAS--FRKCYAKCFIAC-AITPGITLGTCGATCLAKCLFIASVP 62
           +V+I+  I +L+A  +     F++CY  C + C A +       C  TC  +CL   S P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 63  -MNFNHMN-THYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIK 108
            ++ N+++ + YFCKLGCAT  C   S+  +P+ ++V  CVDSC+  C K
Sbjct: 64  SVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of CmoCh17G007880 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 1

Query: 47  TCLAKCLFIASVPMNFNHMNTH--YFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGT 106
           +C+  CL   S  M+  +   H  Y+CKLGC+T  C   S+  +P+  KV  CVDSC+  
Sbjct: 40  SCIKTCLEPPSSQMDSTNEINHNDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSCSDK 99

BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|700190113|gb|KGN45346.1| (hypothetical protein Csa_7G446640 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 3.4e-36
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 1

Query: 1  MKSVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPM 60
          MKSVV+ICFILSL+AGRSTASF KCYAKCFI CAITPGI +GTCGA CLA CLFIAS PM
Sbjct: 1  MKSVVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASSPM 60

Query: 61 NFNHMNTHYFCKLGCATSMCTKFSTKNDPSEK 93
          + N+M+THYFCKLGCATS CTKFSTK DP +K
Sbjct: 61 DLNYMDTHYFCKLGCATSRCTKFSTKKDPGKK 92

BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 64/111 (57.66%), Postives = 78/111 (70.27%), Query Frame = 1

Query: 1   MKSVVIICFILSLMAGRSTASFR--KCYAKCFIACAITPGI-TLGTCGATCLAKCLFIAS 60
           M+SVV+ICFILSL+AG+STA     KCY  C   CA+   + T+G C   C A C+ IAS
Sbjct: 1   MRSVVLICFILSLVAGKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIAIAS 60

Query: 61  VPMNFNHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIKA 109
            PMN N ++T YFCKLGCATS CTK STK D +EKKVE CV++C   C+KA
Sbjct: 61  SPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQICMKA 111

BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|659131068|ref|XP_008465492.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 1

Query: 1   MKSVVIICFILSLMAGRSTASF--RKCYAKCFIACAITPGI-TLGTCGATCLAKCLFIAS 60
           M+S+V+I FILSL+AGRST      K + KC   CAI P I  +  C   C+A C+ +AS
Sbjct: 1   MRSIVLIHFILSLVAGRSTPVLDTAKWFVKCMAECAILPIIPVVSICAVKCMADCIPVAS 60

Query: 61  VPMNFNHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIKA 109
            PM+ N M+THYFCKLGC T  CTK STK D +EKKVE  V++C  TC+KA
Sbjct: 61  SPMDLNRMDTHYFCKLGCTTYRCTKLSTKKDLAEKKVESGVNTCDQTCMKA 111

BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis])

HSP 1 Score: 112.1 bits (279), Expect = 6.2e-22
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1

Query: 1   MKSVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPM 60
           +KSV ++C +L L  G+S A+F+ CY  CFI CAITPG TL +C   CL  C+   S  +
Sbjct: 4   VKSVFMVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDSL 63

Query: 61  NFNHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTC 106
           +    +T YFCKLGCA+S+CT  STK++P EK+V  CV+SC+ TC
Sbjct: 64  SLR--DTMYFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTC 106

BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|568822290|ref|XP_006465567.1| (PREDICTED: thionin-like protein 2 [Citrus sinensis])

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-21
Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 1

Query: 1   MKSVVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASVPM 60
           ++S++++  +  L+ G+S A+F++CY  CFI C ITPG TLG+C A CL  C+F   +  
Sbjct: 6   VESLLMVYLMTGLLVGQSQAAFKECYETCFIICYITPGTTLGSCAAKCLKDCIFPPKL-H 65

Query: 61  NFNHMNTHYFCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCIK 108
             +  +T YFCKLGCATS+CT  S+K++P+ +KVE CV+SC+ +C K
Sbjct: 66  TLSLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSK 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
THNL2_ARATH4.6e-0935.45Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KC18_CUCSA2.4e-3681.52Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1[more]
A0A059AI82_EUCGR4.3e-2250.48Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1[more]
A0A067E0U5_CITSI2.8e-2147.62Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1[more]
V4ST32_9ROSI2.8e-2147.62Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1[more]
V4ULM8_9ROSI2.8e-2152.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12663.12.6e-1035.45 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
AT1G12672.21.3e-0639.34 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700190113|gb|KGN45346.1|3.4e-3681.52hypothetical protein Csa_7G446640 [Cucumis sativus][more]
gi|449470525|ref|XP_004152967.1|1.9e-2657.66PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|659131068|ref|XP_008465492.1|2.1e-2254.05PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|702484105|ref|XP_010033893.1|6.2e-2250.48PREDICTED: thionin-like protein 2 [Eucalyptus grandis][more]
gi|568822290|ref|XP_006465567.1|2.4e-2146.73PREDICTED: thionin-like protein 2 [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G007880.1CmoCh17G007880.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36312FAMILY NOT NAMEDcoord: 4..106
score: 1.9
NoneNo IPR availablePANTHERPTHR36312:SF1PLANT THIONIN FAMILY PROTEIN-RELATEDcoord: 4..106
score: 1.9

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh17G007880CmoCh08G006440Cucurbita moschata (Rifu)cmocmoB320