CmoCh17G007880 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTCCTACTGCTTATTTTCCACAAGCCAAGTGGTTATTTAAGAACAACCACTCTTCCCCAAAGCTTCACATTGAAGAGTGAGTGAAAATGAAGTCAGTTGTTATAATTTGCTTCATTCTGAGCTTAATGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTACGCCAAGTGCTTCATAGCGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCAGTCCCAATGAATTTCAACCATATGAACACTCATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCATGTGAGCAAAATTTCCTGTACCCATTTCTTCGTTTCTTATTTTTCAAACATGTTTTCATTTTGTGTTCTTATGAACTTGGCAGCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCGTGCGCTGGAACATGCATCAAAGCTTAGAATGCAGAAACATGAAGAAGGGAGGAGAAGGAGCTGGGATTGGCCTTAACACCATCAATAAATAAACATAATTTGGTGTATGCATGGTTTCATGGTTTCAAGTTTGTGCATGATATATGAGAATGATGTGTTACCTGGAACCATAAAAACTTATTAGATACAAAATTAAAAGTTTTAAAAATCTATTAAAATTTGATCTCAACGTTGAGAGACTAAACAAAGC TTTTCCTACTGCTTATTTTCCACAAGCCAAGTGGTTATTTAAGAACAACCACTCTTCCCCAAAGCTTCACATTGAAGAGTGAGTGAAAATGAAGTCAGTTGTTATAATTTGCTTCATTCTGAGCTTAATGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTACGCCAAGTGCTTCATAGCGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCAGTCCCAATGAATTTCAACCATATGAACACTCATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCATCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCGTGCGCTGGAACATGCATCAAAGCTTAGAATGCAGAAACATGAAGAAGGGAGGAGAAGGAGCTGGGATTGGCCTTAACACCATCAATAAATAAACATAATTTGGTGTATGCATGGTTTCATGGTTTCAAGTTTGTGCATGATATATGAGAATGATGTGTTACCTGGAACCATAAAAACTTATTAGATACAAAATTAAAAGTTTTAAAAATCTATTAAAATTTGATCTCAACGTTGAGAGACTAAACAAAGC ATGAAGTCAGTTGTTATAATTTGCTTCATTCTGAGCTTAATGGCAGGAAGGTCCACAGCGTCCTTTAGGAAGTGCTACGCCAAGTGCTTCATAGCGTGTGCTATCACACCAGGCATCACCCTTGGCACCTGCGGTGCAACGTGCTTGGCGAAGTGCCTGTTCATTGCATCAGTCCCAATGAATTTCAACCATATGAACACTCATTACTTCTGCAAACTTGGGTGTGCCACTTCCATGTGCACCAAATTCAGCACCAAGAACGACCCATCTGAGAAGAAAGTGGAAAGGTGTGTGGACTCGTGCGCTGGAACATGCATCAAAGCTTAG
BLAST of CmoCh17G007880 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 4.6e-09 Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1
BLAST of CmoCh17G007880 vs. TrEMBL
Match: A0A0A0KC18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446640 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 2.4e-36 Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 1
BLAST of CmoCh17G007880 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 4.3e-22 Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1
BLAST of CmoCh17G007880 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21 Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 1
BLAST of CmoCh17G007880 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21 Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 1
BLAST of CmoCh17G007880 vs. TrEMBL
Match: V4ULM8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027058mg PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21 Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1
BLAST of CmoCh17G007880 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10 Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1
BLAST of CmoCh17G007880 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein) HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06 Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 1
BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|700190113|gb|KGN45346.1| (hypothetical protein Csa_7G446640 [Cucumis sativus]) HSP 1 Score: 159.5 bits (402), Expect = 3.4e-36 Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 1
BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus]) HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26 Identity = 64/111 (57.66%), Postives = 78/111 (70.27%), Query Frame = 1
BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|659131068|ref|XP_008465492.1| (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22 Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 1
BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis]) HSP 1 Score: 112.1 bits (279), Expect = 6.2e-22 Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1
BLAST of CmoCh17G007880 vs. NCBI nr
Match: gi|568822290|ref|XP_006465567.1| (PREDICTED: thionin-like protein 2 [Citrus sinensis]) HSP 1 Score: 110.2 bits (274), Expect = 2.4e-21 Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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