Bhi09G000099 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G000099
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	thionin-like protein 2
Location	chr9 : 2449652 .. 2449954 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCAGCATGGCAATGAAATGGGCTTTAATGGCTTGCCTGTTGCTCAGCTCGCTCTCCATCGCCAATTCCGAACCTATTCAAGATTGCTACAGCAGGTGCGTCGTCTTATGCGCCGTCACGCCTGGCATCCCCTTCTCCGACTGCCCGTCAAGATGCCTGAAATCTTGCACGAGCCCGTCTGTCAAACTACATGGGCAACAGCAAGATCATTTCAGCTGCGAGCTCGACTGTGCAATTTCCTCGTGTACCAAATTTAGCACAAAGGAAAATCCAGGTTTGAAATCTACACTCATTTAA

mRNA sequence

ATGGAGAGCAGCATGGCAATGAAATGGGCTTTAATGGCTTGCCTGTTGCTCAGCTCGCTCTCCATCGCCAATTCCGAACCTATTCAAGATTGCTACAGCAGGTGCGTCGTCTTATGCGCCGTCACGCCTGGCATCCCCTTCTCCGACTGCCCGTCAAGATGCCTGAAATCTTGCACGAGCCCGTCTGTCAAACTACATGGGCAACAGCAAGATCATTTCAGCTGCGAGCTCGACTGTGCAATTTCCTCGTGTACCAAATTTAGCACAAAGGAAAATCCAGGTTTGAAATCTACACTCATTTAA

Coding sequence (CDS)

ATGGAGAGCAGCATGGCAATGAAATGGGCTTTAATGGCTTGCCTGTTGCTCAGCTCGCTCTCCATCGCCAATTCCGAACCTATTCAAGATTGCTACAGCAGGTGCGTCGTCTTATGCGCCGTCACGCCTGGCATCCCCTTCTCCGACTGCCCGTCAAGATGCCTGAAATCTTGCACGAGCCCGTCTGTCAAACTACATGGGCAACAGCAAGATCATTTCAGCTGCGAGCTCGACTGTGCAATTTCCTCGTGTACCAAATTTAGCACAAAGGAAAATCCAGGTTTGAAATCTACACTCATTTAA

Protein sequence

MESSMAMKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGIPFSDCPSRCLKSCTSPSVKLHGQQQDHFSCELDCAISSCTKFSTKENPGLKSTLI

Homology

[Close]

BLAST of Bhi09G000099 vs. TrEMBL
Match: tr|A0A0A0K781|A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 41/101 (40.59%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 1   MESSMAMKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTS 60
           ME+ +A KWALMA LLL+SLS                   +TPG                
Sbjct: 1   MENVLAKKWALMAWLLLTSLSTXXXXXXXXXXXXXXXXXXITPGVAFSDCPLRCLQACIV 60

Query: 61  PSVKL-------HGQQQDHFSCELDCAISSCTKFSTKENPG 95
           PS  +         QQQ+HF C+L CA SSCTKFSTK+NPG
Sbjct: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPG 101

[Close]

BLAST of Bhi09G000099 vs. TrEMBL
Match: tr|A0A059AI82|A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-05
Identity = 29/87 (33.33%), Postives = 38/87 (43.68%), Query Frame = 0


Query: 7  MKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTSPSVKLH 66
          +K   M CL+L      +    QDCY  C +LCA+TPG                P     
Sbjct: 4  VKSVFMVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDSL 63

Query: 67 GQQQDHFSCELDCAISSCTKFSTKENP 94
            +   + C+L CA S CT  STK+NP
Sbjct: 64 SLRDTMYFCKLGCASSLCTNLSTKDNP 90

[Close]

BLAST of Bhi09G000099 vs. TrEMBL
Match: tr|A0A1S3CDU0|A0A1S3CDU0_CUCME (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499746 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 40/106 (37.74%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 1   MESS--MAMKWALMACLLLSSLSIANS-----EPIQDCYSRCVVLCAVTPGXXXXXXXXX 60
           MESS  MAMK  L+  L LSSLSIA+S      P+ +C+  C+  C V            
Sbjct: 1   MESSNVMAMKCGLIVWLFLSSLSIADSFIDEPTPLGNCFKSCLAECVVNKKTARLLCPFK 60

Query: 61  XXXXXTSPSVKLH---GQQQDHFSCELDCAISSCTKFSTKENPGLK 97
                 +     H    +  ++ SCEL CA S C +FSTKENP  K
Sbjct: 61  CTKICVADPSTTHFKFVKVDNYSSCELQCAASMCGEFSTKENPDEK 106

[Close]

BLAST of Bhi09G000099 vs. TrEMBL
Match: tr|A0A061GI20|A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao OX=3641 GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-04
Identity = 28/84 (33.33%), Postives = 38/84 (45.24%), Query Frame = 0


Query: 11  LMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTSPSVKLHGQQQ 70
           +M CL+L  L   ++   Q CY+ C +LC   P                 PS  L   + 
Sbjct: 49  MMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSSTLESGKD 108

Query: 71  DHFSCELDCAISSCTKFSTKENPG 95
             + C+L CA S CT  S+KENPG
Sbjct: 109 TQYFCKLGCATSLCTDLSSKENPG 132

[Close]

BLAST of Bhi09G000099 vs. TrEMBL
Match: tr|A0A1S3CDU4|A0A1S3CDU4_CUCME (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-04
Identity = 37/95 (38.95%), Postives = 44/95 (46.32%), Query Frame = 0


Query: 1  MESSMAMKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTS 60
          ME+ +A KWALMA LLL+SLS                   +TPG                
Sbjct: 1  MENILAKKWALMAWLLLTSLSTXXXXXXXXXXXXXXXXXXITPGVAFSDCPLRCLQACIV 60

Query: 61 PSVKL------HGQ-QQDHFSCELDCAISSCTKFS 89
          PS  +      H Q QQ+HF C+L CA SSCTKFS
Sbjct: 61 PSFPIDDDDVVHRQKQQNHFFCKLGCAASSCTKFS 95

[Close]

BLAST of Bhi09G000099 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-13
Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MESSMAMKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTS 60
           MES  A K  LMA L+LSSL+ ANS   Q+CY+ C V+CA+TPG                
Sbjct: 1   MESCKA-KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACII 60

Query: 61  PSVKLHG---------QQQDHFSCELDCAISSCTKFSTKENPGLK 97
           PS  +H          QQ++ F CEL CA SSCTKFST +NP  K
Sbjct: 61  PSFPIHNAAADDDVHRQQKNQFFCELGCAASSCTKFSTHQNPAEK 104

[Close]

BLAST of Bhi09G000099 vs. NCBI nr
Match: XP_022992447.1 (thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 1   MESSMAMKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTS 60
           MES  A K  LMA L+LSSL+ ANS   Q+CY+ C ++CA+TPG                
Sbjct: 1   MESCKA-KLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACII 60

Query: 61  PSVKLHG--------QQQDHFSCELDCAISSCTKFSTKENPGLK 97
           PS  +H         QQ++ F CEL CA SSCTKFST++NP  K
Sbjct: 61  PSFPIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEK 103

[Close]

BLAST of Bhi09G000099 vs. NCBI nr
Match: XP_023547567.1 (thionin-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023547568.1 thionin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 47/101 (46.53%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MESSMAMKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTS 60
           MES  A K  LMA L+LSSL+ ANS   Q+CY+ C V+CA+TPG                
Sbjct: 1   MESCKA-KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACII 60

Query: 61  PSVKLHG--------QQQDHFSCELDCAISSCTKFSTKENP 94
           PS  +H         QQ++ F CEL CA SSCTKFST +NP
Sbjct: 61  PSFPIHNAAADDVHRQQKNQFFCELGCATSSCTKFSTHQNP 100

[Close]

BLAST of Bhi09G000099 vs. NCBI nr
Match: XP_011659556.1 (PREDICTED: thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_7G441625 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 5.4e-08
Identity = 41/101 (40.59%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 1   MESSMAMKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTS 60
           ME+ +A KWALMA LLL+SLS                   +TPG                
Sbjct: 1   MENVLAKKWALMAWLLLTSLSTXXXXXXXXXXXXXXXXXXITPGVAFSDCPLRCLQACIV 60

Query: 61  PSVKL-------HGQQQDHFSCELDCAISSCTKFSTKENPG 95
           PS  +         QQQ+HF C+L CA SSCTKFSTK+NPG
Sbjct: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPG 101

[Close]

BLAST of Bhi09G000099 vs. NCBI nr
Match: KCW53757.1 (hypothetical protein EUGRSUZ_J03010 [Eucalyptus grandis])

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 29/87 (33.33%), Postives = 38/87 (43.68%), Query Frame = 0


Query: 7  MKWALMACLLLSSLSIANSEPIQDCYSRCVVLCAVTPGXXXXXXXXXXXXXXTSPSVKLH 66
          +K   M CL+L      +    QDCY  C +LCA+TPG                P     
Sbjct: 4  VKSVFMVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDSL 63

Query: 67 GQQQDHFSCELDCAISSCTKFSTKENP 94
            +   + C+L CA S CT  STK+NP
Sbjct: 64 SLRDTMYFCKLGCASSLCTNLSTKDNP 90

The following BLAST results are available for this feature:

BLAST of Bhi09G000099 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09G000099 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09G000099 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K781\|A0A0A0K781_CUCSA	3.6e-08	40.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1	[more]
tr\|A0A059AI82\|A0A059AI82_EUCGR	8.2e-05	33.33	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03010 PE=4 SV...	[more]
tr\|A0A1S3CDU0\|A0A1S3CDU0_CUCME	1.1e-04	37.74	thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499746 PE=4 SV=1	[more]
tr\|A0A061GI20\|A0A061GI20_THECC	1.8e-04	33.33	To encode a PR protein, Belongs to the plant thionin family with the following m...	[more]
tr\|A0A1S3CDU4\|A0A1S3CDU4_CUCME	4.1e-04	38.95	thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1	[more]

BLAST of Bhi09G000099 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953260.1	9.5e-13	45.71	thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein...	[more]
XP_022992447.1	1.2e-12	45.19	thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2...	[more]
XP_023547567.1	1.2e-12	46.53	thionin-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023547568.1 thionin-like...	[more]
XP_011659556.1	5.4e-08	40.59	PREDICTED: thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical pro...	[more]
KCW53757.1	1.2e-04	33.33	hypothetical protein EUGRSUZ_J03010 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038975	THNL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000099	Bhi09M000099	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36312:SF1	THIONIN-LIKE PROTEIN 1-RELATED	coord: 1..95
IPR038975	Thionin-like protein	PANTHER	PTHR36312	FAMILY NOT NAMED	coord: 1..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi09G000099	Csa7G441620	Cucumber (Chinese Long) v2	cuwgoB690
Bhi09G000099	Cucsa.358930	Cucumber (Gy14) v1	cgywgoB719
Bhi09G000099	Lsi02G027730	Bottle gourd (USVL1VR-Ls)	lsiwgoB270
Bhi09G000099	Cp4.1LG17g05850	Cucurbita pepo (Zucchini)	cpewgoB0422
Bhi09G000099	CsGy7G019480	Cucumber (Gy14) v2	cgybwgoB659
Bhi09G000099	Carg18817	Silver-seed gourd	carwgoB0883
Bhi09G000099	CsaV3_7G033050	Cucumber (Chinese Long) v3	cucwgoB715

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G000099	Wax gourd	wgowgoB130
Bhi09G000099	Cucurbita maxima (Rimu)	cmawgoB0492
Bhi09G000099	Cucurbita maxima (Rimu)	cmawgoB1120
Bhi09G000099	Cucurbita moschata (Rifu)	cmowgoB0491
Bhi09G000099	Cucurbita moschata (Rifu)	cmowgoB1119
Bhi09G000099	Cucurbita pepo (Zucchini)	cpewgoB0208
Bhi09G000099	Wild cucumber (PI 183967)	cpiwgoB702
Bhi09G000099	Cucumber (Chinese Long) v3	cucwgoB729
Bhi09G000099	Melon (DHL92) v3.6.1	medwgoB240
Bhi09G000099	Melon (DHL92) v3.5.1	mewgoB239
Bhi09G000099	Watermelon (Charleston Gray)	wcgwgoB068
Bhi09G000099	Watermelon (97103) v2	wgowmbB614
Bhi09G000099	Watermelon (97103) v1	wgowmB585
Bhi09G000099	Silver-seed gourd	carwgoB1204