Lsi02G027690 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G027690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
Locationchr02 : 33943234 .. 33944117 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATAATGAAATGGGCTTTAATGGCTTGTTTGGTGCTGAGCTCGCTCTCCATGACCAATTCCGAACCTTTTCAAGATTGTTACAGCTCCTGCTTCGTCGTATGCACCGTCACGCCTGGGATCTCCTTCTCCGACTGCCCGTCGAGATGCCTGCATTCTTGCTTGAACCCGTCTACTTCTATGAACAACACCAATGTCGTCCATCAGCCACAACAAAATCGATTGTTCTGCAAGCTCGGTTGCGCAACTTTCTCGTGTACCAAGTTTAGCACAAAGGAATATCCAGGTTCAAAATCTGCACTTCCCGTTTTAGTTATATATTTTATTAGTTAATAAACATATAAAGTTTCTTAAGGACTAACTCATTACTCATAAAGTTTATATTGTAAATTTTTTTTCCATATTTTTAACGTGGAATCCTCGATATACTTAAAGTAAAAGAAAAAGCCAAAACAAAAAGAAGAAAGAAGAAGAGAATGACTTCTTTATTAATACTTATTCGTATAAATTAGTTTATCGCATCCTTTTAAAAAAAGAAACAAGCTTTTATCAAGTTGGCTTCTATCAAGTTGAAGAGGATTAAATCCAATTTATCGGTGAAATTTTTCTATGTTTGTAAATAGTTTGATTCATTTTTCTACTTTTGAAAACAAACTTTTTTTTTTTTTATTTATTTTTTATATTGAAGATTAAAGTTTTATTTTCTTTTTCAATGAAAATGTATTGCTTGGTTTACATGTGAAGTTTTCTTTGTTTTGTTTTGTTGATGCAGCTGAGAAAGAAGTGGGGAGCTGTGTGGAATCTTGCTCTCTAGCATGTTCCAGGAATTGATGATCTGCATCTGCTAAATGAAGCCAATGAACTATATATTTTTTTTTGTT

mRNA sequence

ATGGCAATAATGAAATGGGCTTTAATGGCTTGTTTGGTGCTGAGCTCGCTCTCCATGACCAATTCCGAACCTTTTCAAGATTGTTACAGCTCCTGCTTCGTCGTATGCACCGTCACGCCTGGGATCTCCTTCTCCGACTGCCCGTCGAGATGCCTGCATTCTTGCTTGAACCCGTCTACTTCTATGAACAACACCAATGTCGTCCATCAGCCACAACAAAATCGATTGTTCTGCAAGCTCGGTTGCGCAACTTTCTCGTGTACCAAGTTTAGCACAAAGGAATATCCAGCTGAGAAAGAAGTGGGGAGCTGTGTGGAATCTTGCTCTCTAGCATGTTCCAGGAATTGATGATCTGCATCTGCTAAATGAAGCCAATGAACTATATATTTTTTTTTGTT

Coding sequence (CDS)

ATGGCAATAATGAAATGGGCTTTAATGGCTTGTTTGGTGCTGAGCTCGCTCTCCATGACCAATTCCGAACCTTTTCAAGATTGTTACAGCTCCTGCTTCGTCGTATGCACCGTCACGCCTGGGATCTCCTTCTCCGACTGCCCGTCGAGATGCCTGCATTCTTGCTTGAACCCGTCTACTTCTATGAACAACACCAATGTCGTCCATCAGCCACAACAAAATCGATTGTTCTGCAAGCTCGGTTGCGCAACTTTCTCGTGTACCAAGTTTAGCACAAAGGAATATCCAGCTGAGAAAGAAGTGGGGAGCTGTGTGGAATCTTGCTCTCTAGCATGTTCCAGGAATTGA

Protein sequence

MAIMKWALMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNNTNVVHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSRN
BLAST of Lsi02G027690 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1

Query: 7   ALMACLVLSSL---SMTNSEPFQDCYSSCFVVCTVTPGI-SFSDCPSRCLHSCLN----P 66
           A+M  +V+ +L   +     PF++CY +C V C        +  CP  C   CL     P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 67  STSMNNTNVVHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSR 115
           S S NN +      ++  FCKLGCAT+ C   S+ + P  + V +CV+SCS  C++
Sbjct: 64  SVSSNNID------ESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1

Query: 5   KWALMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNN 64
           KWALMA L+L+SLS  NS  FQ+CY++CFV+C +TPG++FSDCP RCL +C+ PS  +++
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 65  TNVVH-QPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSRN 116
            +VVH Q QQN  FCKLGCA  SCTKFSTK+ P E++VG CV+SCS  CS N
Sbjct: 68  ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1

Query: 8   LMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNNTNV 67
           LM  LVL  L   ++  FQ CY  CF+ C +TP  +   C  +CL  C+ PS S  +   
Sbjct: 10  LMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSG-- 69

Query: 68  VHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSRN 116
               +  + FCKLGCAT  CT  S+KE P E++VGSCV+SCS  C++N
Sbjct: 70  ----KDTQYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCAKN 111

BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1

Query: 8   LMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNNTNV 67
           +M CLVL  L   ++  FQ CY+ CF++C   P      C  +CL+ C+ PS+++ +   
Sbjct: 49  MMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSSTLESG-- 108

Query: 68  VHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSR 115
               +  + FCKLGCAT  CT  S+KE P E++VGSCV+SCS  C++
Sbjct: 109 ----KDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCAK 149

BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.4e-16
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1

Query: 1   MAIMKWALMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSC-LNPS 60
           M  +K   M CLVL      +   FQDCY +CF++C +TPG +   C   CL  C + PS
Sbjct: 1   MGKVKSVFMVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPS 60

Query: 61  TSMNNTNVVHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACS 114
            S++  + ++       FCKLGCA+  CT  STK+ P EK V  CV SCS  C+
Sbjct: 61  DSLSLRDTMY-------FCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCT 107

BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A067KY62_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06251 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1

Query: 17  LSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNNTNVVHQPQQNRL 76
           L       F DCY  CF++C +TPG S   C  +CL  C+ PS+     N + + QQ   
Sbjct: 21  LGQPTEASFGDCYKVCFLLCVITPGNSLVGCGGKCLKDCIFPSS----INSLTEKQQTHY 80

Query: 77  FCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSRN 116
           FC  GCA+  C+  S+K  P E++V SCV SCS  CS+N
Sbjct: 81  FCNFGCASSFCSNISSKHDPREEKVASCVNSCSSRCSKN 115

BLAST of Lsi02G027690 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-12
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1

Query: 7   ALMACLVLSSL---SMTNSEPFQDCYSSCFVVCTVTPGI-SFSDCPSRCLHSCLN----P 66
           A+M  +V+ +L   +     PF++CY +C V C        +  CP  C   CL     P
Sbjct: 4   AVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPP 63

Query: 67  STSMNNTNVVHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSR 115
           S S NN +      ++  FCKLGCAT+ C   S+ + P  + V +CV+SCS  C++
Sbjct: 64  SVSSNNID------ESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of Lsi02G027690 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1

Query: 51  CLHSCLNP-STSMNNTNVVHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCS 110
           C+ +CL P S+ M++TN ++    N  +CKLGC+T  C   S+ + P   +V  CV+SCS
Sbjct: 41  CIKTCLEPPSSQMDSTNEINH---NDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSCS 100

Query: 111 LACS 114
             CS
Sbjct: 101 DKCS 101

BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1

Query: 5   KWALMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNN 64
           KWALMA L+L+SLS  NS  FQ+CY++CFV+C +TPG++FSDCP RCL +C+ PS  +++
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 65  TNVVH-QPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSRN 116
            +VVH Q QQN  FCKLGCA  SCTKFSTK+ P E++VG CV+SCS  CS N
Sbjct: 68  ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 1

Query: 5   KWALMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNN 64
           KWALMA L+L+SLS  NS  FQ+CY++CFV+C +TPG++FSDCP RCL +C+ PS  +++
Sbjct: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67

Query: 65  TNVVH-QPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACS 114
            +VVH Q QQN  FCKLGCA  SCTKFSTK+ P E++V  CV+SCS  CS
Sbjct: 68  DDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCS 117

BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|590617165|ref|XP_007023712.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao])

HSP 1 Score: 93.2 bits (230), Expect = 3.2e-16
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1

Query: 8   LMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNNTNV 67
           LM  LVL  L   ++  FQ CY  CF+ C +TP  +   C  +CL  C+ PS S  +   
Sbjct: 10  LMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSG-- 69

Query: 68  VHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSRN 116
               +  + FCKLGCAT  CT  S+KE P E++VGSCV+SCS  C++N
Sbjct: 70  ----KDTQYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCAKN 111

BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|590618512|ref|XP_007024067.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao])

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1

Query: 8   LMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNNTNV 67
           +M CLVL  L   ++  FQ CY+ CF++C   P      C  +CL+ C+ PS+++ +   
Sbjct: 49  MMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSSTLESG-- 108

Query: 68  VHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSR 115
               +  + FCKLGCAT  CT  S+KE P E++VGSCV+SCS  C++
Sbjct: 109 ----KDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCAK 149

BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis])

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1

Query: 1   MAIMKWALMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSC-LNPS 60
           M  +K   M CLVL      +   FQDCY +CF++C +TPG +   C   CL  C + PS
Sbjct: 1   MGKVKSVFMVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPS 60

Query: 61  TSMNNTNVVHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACS 114
            S++  + ++       FCKLGCA+  CT  STK+ P EK V  CV SCS  C+
Sbjct: 61  DSLSLRDTMY-------FCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCT 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
THNL2_ARATH1.2e-1033.62Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K781_CUCSA1.4e-3461.61Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1[more]
A0A061GH02_THECC2.2e-1643.52To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
A0A061GI20_THECC2.9e-1641.12To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
A0A059AI82_EUCGR8.4e-1641.23Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1[more]
A0A067KY62_JATCU3.2e-1541.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06251 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12663.16.6e-1233.62 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
AT1G12672.22.2e-0740.63 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778729254|ref|XP_011659556.1|2.0e-3461.61PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|659122243|ref|XP_008461039.1|1.1e-3260.91PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|590617165|ref|XP_007023712.1|3.2e-1643.52To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
gi|590618512|ref|XP_007024067.1|4.1e-1641.12To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
gi|702484105|ref|XP_010033893.1|1.2e-1541.23PREDICTED: thionin-like protein 2 [Eucalyptus grandis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G027690.1Lsi02G027690.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G027690Watermelon (97103) v2lsiwmbB199
Lsi02G027690Wax gourdlsiwgoB221
Lsi02G027690Wax gourdlsiwgoB270
Lsi02G027690Wax gourdlsiwgoB286
Lsi02G027690Bottle gourd (USVL1VR-Ls)lsilsiB117
Lsi02G027690Cucurbita maxima (Rimu)cmalsiB051
Lsi02G027690Cucurbita maxima (Rimu)cmalsiB238
Lsi02G027690Cucurbita maxima (Rimu)cmalsiB348
Lsi02G027690Cucurbita maxima (Rimu)cmalsiB418
Lsi02G027690Cucurbita maxima (Rimu)cmalsiB823
Lsi02G027690Cucurbita moschata (Rifu)cmolsiB037
Lsi02G027690Cucurbita moschata (Rifu)cmolsiB225
Lsi02G027690Cucurbita moschata (Rifu)cmolsiB337
Lsi02G027690Cucurbita moschata (Rifu)cmolsiB405
Lsi02G027690Cucurbita moschata (Rifu)cmolsiB810
Lsi02G027690Cucurbita pepo (Zucchini)cpelsiB113
Lsi02G027690Cucurbita pepo (Zucchini)cpelsiB442
Lsi02G027690Cucumber (Chinese Long) v2culsiB503
Lsi02G027690Melon (DHL92) v3.5.1lsimeB185
Lsi02G027690Melon (DHL92) v3.5.1lsimeB213
Lsi02G027690Watermelon (Charleston Gray)lsiwcgB160
Lsi02G027690Watermelon (Charleston Gray)lsiwcgB204
Lsi02G027690Watermelon (97103) v1lsiwmB176
Lsi02G027690Watermelon (97103) v1lsiwmB191
Lsi02G027690Cucumber (Gy14) v2cgyblsiB167
Lsi02G027690Melon (DHL92) v3.6.1lsimedB194
Lsi02G027690Melon (DHL92) v3.6.1lsimedB222
Lsi02G027690Silver-seed gourdcarlsiB106
Lsi02G027690Silver-seed gourdcarlsiB114
Lsi02G027690Silver-seed gourdcarlsiB176
Lsi02G027690Silver-seed gourdcarlsiB684
Lsi02G027690Silver-seed gourdcarlsiB937
Lsi02G027690Cucumber (Chinese Long) v3cuclsiB198