Lsi02G027690 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAATAATGAAATGGGCTTTAATGGCTTGTTTGGTGCTGAGCTCGCTCTCCATGACCAATTCCGAACCTTTTCAAGATTGTTACAGCTCCTGCTTCGTCGTATGCACCGTCACGCCTGGGATCTCCTTCTCCGACTGCCCGTCGAGATGCCTGCATTCTTGCTTGAACCCGTCTACTTCTATGAACAACACCAATGTCGTCCATCAGCCACAACAAAATCGATTGTTCTGCAAGCTCGGTTGCGCAACTTTCTCGTGTACCAAGTTTAGCACAAAGGAATATCCAGGTTCAAAATCTGCACTTCCCGTTTTAGTTATATATTTTATTAGTTAATAAACATATAAAGTTTCTTAAGGACTAACTCATTACTCATAAAGTTTATATTGTAAATTTTTTTTCCATATTTTTAACGTGGAATCCTCGATATACTTAAAGTAAAAGAAAAAGCCAAAACAAAAAGAAGAAAGAAGAAGAGAATGACTTCTTTATTAATACTTATTCGTATAAATTAGTTTATCGCATCCTTTTAAAAAAAGAAACAAGCTTTTATCAAGTTGGCTTCTATCAAGTTGAAGAGGATTAAATCCAATTTATCGGTGAAATTTTTCTATGTTTGTAAATAGTTTGATTCATTTTTCTACTTTTGAAAACAAACTTTTTTTTTTTTTATTTATTTTTTATATTGAAGATTAAAGTTTTATTTTCTTTTTCAATGAAAATGTATTGCTTGGTTTACATGTGAAGTTTTCTTTGTTTTGTTTTGTTGATGCAGCTGAGAAAGAAGTGGGGAGCTGTGTGGAATCTTGCTCTCTAGCATGTTCCAGGAATTGATGATCTGCATCTGCTAAATGAAGCCAATGAACTATATATTTTTTTTTGTT ATGGCAATAATGAAATGGGCTTTAATGGCTTGTTTGGTGCTGAGCTCGCTCTCCATGACCAATTCCGAACCTTTTCAAGATTGTTACAGCTCCTGCTTCGTCGTATGCACCGTCACGCCTGGGATCTCCTTCTCCGACTGCCCGTCGAGATGCCTGCATTCTTGCTTGAACCCGTCTACTTCTATGAACAACACCAATGTCGTCCATCAGCCACAACAAAATCGATTGTTCTGCAAGCTCGGTTGCGCAACTTTCTCGTGTACCAAGTTTAGCACAAAGGAATATCCAGCTGAGAAAGAAGTGGGGAGCTGTGTGGAATCTTGCTCTCTAGCATGTTCCAGGAATTGATGATCTGCATCTGCTAAATGAAGCCAATGAACTATATATTTTTTTTTGTT ATGGCAATAATGAAATGGGCTTTAATGGCTTGTTTGGTGCTGAGCTCGCTCTCCATGACCAATTCCGAACCTTTTCAAGATTGTTACAGCTCCTGCTTCGTCGTATGCACCGTCACGCCTGGGATCTCCTTCTCCGACTGCCCGTCGAGATGCCTGCATTCTTGCTTGAACCCGTCTACTTCTATGAACAACACCAATGTCGTCCATCAGCCACAACAAAATCGATTGTTCTGCAAGCTCGGTTGCGCAACTTTCTCGTGTACCAAGTTTAGCACAAAGGAATATCCAGCTGAGAAAGAAGTGGGGAGCTGTGTGGAATCTTGCTCTCTAGCATGTTCCAGGAATTGA MAIMKWALMACLVLSSLSMTNSEPFQDCYSSCFVVCTVTPGISFSDCPSRCLHSCLNPSTSMNNTNVVHQPQQNRLFCKLGCATFSCTKFSTKEYPAEKEVGSCVESCSLACSRN
BLAST of Lsi02G027690 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10 Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34 Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1
BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16 Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 8.4e-16 Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
BLAST of Lsi02G027690 vs. TrEMBL
Match: A0A067KY62_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06251 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15 Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1
BLAST of Lsi02G027690 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 67.4 bits (163), Expect = 6.6e-12 Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
BLAST of Lsi02G027690 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein) HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07 Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1
BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus]) HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34 Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1
BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32 Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 1
BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|590617165|ref|XP_007023712.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]) HSP 1 Score: 93.2 bits (230), Expect = 3.2e-16 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1
BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|590618512|ref|XP_007024067.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]) HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16 Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
BLAST of Lsi02G027690 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis]) HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15 Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |