Cucsa.322390 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.322390
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03080 : 2153341 .. 2153730 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGCAGAAAGCATTGATGAAACTCAAGGCAGTTCTCCGTCTCTGTCTCCTTCCCCGGCAACGGTCACGACGGCTCGGATCATTCGATTCCGACGACGATCAAAAAGTAGGTATACGGATTGTGTTGGAAGATCAGAGTAGAATCGCTGAGAGTTCTTTTGTGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAACTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGATTATGAACAGAGATCTCCGTCGTCGATTACGTGA

mRNA sequence

ATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGCAGAAAGCATTGATGAAACTCAAGGCAGTTCTCCGTCTCTGTCTCCTTCCCCGGCAACGGTCACGACGGCTCGGATCATTCGATTCCGACGACGATCAAAAAGTAGGTATACGGATTGTGTTGGAAGATCAGAGTAGAATCGCTGAGAGTTCTTTTGTGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAACTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGATTATGAACAGAGATCTCCGTCGTCGATTACGTGA

Coding sequence (CDS)

ATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGCAGAAAGCATTGATGAAACTCAAGGCAGTTCTCCGTCTCTGTCTCCTTCCCCGGCAACGGTCACGACGGCTCGGATCATTCGATTCCGACGACGATCAAAAAGTAGGTATACGGATTGTGTTGGAAGATCAGAGTAGAATCGCTGAGAGTTCTTTTGTGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAACTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGATTATGAACAGAGATCTCCGTCGTCGATTACGTGA

Protein sequence

MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETDYEQRSPSSIT*

Homology

[Close]

BLAST of Cucsa.322390 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-63
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
           MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETDY 120
           ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYET+Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EQRSPSSIT 130
           EQRSPSSIT
Sbjct: 121 EQRSPSSIT 129

[Close]

BLAST of Cucsa.322390 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 70/123 (56.91%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67
           MA RL++ L KLKA LRLCLL R+RS                R VLED          R 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSI------------YRTRNVLEDDQT------ARN 60

Query: 68  LERASSSRYGG---YEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRV--NSYETDYEQ 126
           LER SSSRY     +E+DVD RAEIFIENFRRQLRLERQISLQLR Y V  NS+ETDYE+
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 105

[Close]

BLAST of Cucsa.322390 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 44  DQKVGIRIVLEDQSRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQ 103
           + ++G+  V+ED     +S  VR LER  S      ++DVD+RAEIFI NFRRQL +ERQ
Sbjct: 118 NDRIGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQ 177

Query: 104 ISLQLRYYRVNSYETDY 121
           +SLQLRYYR NS+  DY
Sbjct: 178 VSLQLRYYRGNSFGRDY 194

[Close]

BLAST of Cucsa.322390 vs. TrEMBL
Match: B9N684_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28830g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.4e-12
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 25  LCLLPRQRSRRLGSFDSDDDQKVGIRIVLED-QSRIAESSFVRKLERASSSRYGGYEEDV 84
           L +     SRR G    +D  ++G+   +ED +S   +   VR  ER  S  YG  +ED+
Sbjct: 36  LSIASSSSSRRTGRLSFND--RIGLHGAIEDVESDHQKYKPVRTFERVRS--YGSSDEDI 95

Query: 85  DQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETDY 121
           D+RAEIFI NFR+QL +ERQ+SLQLRYYR NS+  DY
Sbjct: 96  DKRAEIFINNFRQQLLIERQVSLQLRYYRGNSFGRDY 128

[Close]

BLAST of Cucsa.322390 vs. TrEMBL
Match: V4UGU4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010207mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.4e-11
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1


Query: 3   EKKSPMASRLQKALMKLKAVLR-----------LCLLPRQRSRRLGSFDSDDDQKVGIRI 62
           + +S M   L+KA+ KL  +L            +C     +SRR  SF+     ++G++ 
Sbjct: 25  QSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFND----RLGLQY 84

Query: 63  VLEDQSRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYY 118
            + D+    E S VR L+R  S  Y G ++D+D+RAEIFI NFRRQL  ERQ+SL+LRY 
Sbjct: 85  CIVDRDP-DEGSSVRVLQRTKSCAYDG-DDDIDRRAEIFITNFRRQLLYERQVSLELRYR 144

[Close]

BLAST of Cucsa.322390 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 1


Query: 4   KKSPMASRLQKALMKLKAVLRLC------LLPRQRSRRLGSFDSDDDQKVGIRIVLEDQS 63
           K   + +RL++A+ K+K VL         L+P      LGS  S       +R+   D+ 
Sbjct: 5   KDGSLLNRLRQAVNKVKFVLSFKINSLWGLVPM-----LGSSSSSSS----LRLSFNDRP 64

Query: 64  RIAESSFVRKLERASSSRYGGY---------EEDVDQRAEIFIENFRRQLRLERQISLQL 123
            +  +    + +   SSR   Y         +ED+D +AE+FI NF RQL++ERQISL+L
Sbjct: 65  GLTAAFTENEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLEL 124

Query: 124 RYYRVNSYETDYEQRSP 126
           +Y + N+   +Y  RSP
Sbjct: 125 KYCQGNNQSFNY--RSP 130

[Close]

BLAST of Cucsa.322390 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
           MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETDY 120
           ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYET+Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EQRSPSSIT 130
           EQRSPSSIT
Sbjct: 121 EQRSPSSIT 129

[Close]

BLAST of Cucsa.322390 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-58
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 1


Query: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67
           MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETDYEQRSPSS 127
           LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYET+YEQRSPSS
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSPSS 120

Query: 128 IT 130
           IT
Sbjct: 121 IT 122

[Close]

BLAST of Cucsa.322390 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 70/123 (56.91%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67
           MA RL++ L KLKA LRLCLL R+RS                R VLED          R 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSI------------YRTRNVLEDDQT------ARN 60

Query: 68  LERASSSRYGG---YEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRV--NSYETDYEQ 126
           LER SSSRY     +E+DVD RAEIFIENFRRQLRLERQISLQLR Y V  NS+ETDYE+
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 105

[Close]

BLAST of Cucsa.322390 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa])

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-12
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 44  DQKVGIRIVLEDQSRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQ 103
           + ++G+  V+ED     +S  VR LER  S      ++DVD+RAEIFI NFRRQL +ERQ
Sbjct: 118 NDRIGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQ 177

Query: 104 ISLQLRYYRVNSYETDY 121
           +SLQLRYYR NS+  DY
Sbjct: 178 VSLQLRYYRGNSFGRDY 194

[Close]

BLAST of Cucsa.322390 vs. NCBI nr
Match: gi|566178670|ref|XP_006382145.1| (hypothetical protein POPTR_0006s28830g [Populus trichocarpa])

HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 25  LCLLPRQRSRRLGSFDSDDDQKVGIRIVLED-QSRIAESSFVRKLERASSSRYGGYEEDV 84
           L +     SRR G    +D  ++G+   +ED +S   +   VR  ER  S  YG  +ED+
Sbjct: 36  LSIASSSSSRRTGRLSFND--RIGLHGAIEDVESDHQKYKPVRTFERVRS--YGSSDEDI 95

Query: 85  DQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETDY 121
           D+RAEIFI NFR+QL +ERQ+SLQLRYYR NS+  DY
Sbjct: 96  DKRAEIFINNFRQQLLIERQVSLQLRYYRGNSFGRDY 128

The following BLAST results are available for this feature:

BLAST of Cucsa.322390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	7.9e-63	99.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	1.4e-19	56.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
B9ILG0_POPTR	2.2e-12	53.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2	[more]
B9N684_POPTR	6.4e-12	47.42	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28830g PE=4 SV=1	[more]
V4UGU4_9ROSI	5.4e-11	39.68	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010207mg PE=...	[more]

BLAST of Cucsa.322390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	1.7e-08	32.85	unknown protein	[more]

BLAST of Cucsa.322390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	1.1e-62	99.22	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	1.3e-58	99.18	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	2.0e-19	56.91	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|566214045\|ref\|XP_002324391.2\|	3.1e-12	53.25	hypothetical protein POPTR_0018s03620g [Populus trichocarpa]	[more]
gi\|566178670\|ref\|XP_006382145.1\|	9.1e-12	47.42	hypothetical protein POPTR_0006s28830g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.322390.1	Cucsa.322390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 80..110 score: 2.0
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 45..120 score: 7.6
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 45..120 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.322390	Cla008868	Watermelon (97103) v1	cgywmB583
Cucsa.322390	Csa3G004520	Cucumber (Chinese Long) v2	cgycuB458
Cucsa.322390	MELO3C013791	Melon (DHL92) v3.5.1	cgymeB532
Cucsa.322390	ClCG10G000950	Watermelon (Charleston Gray)	cgywcgB556
Cucsa.322390	CSPI03G00980	Wild cucumber (PI 183967)	cgycpiB484
Cucsa.322390	CmaCh16G012210	Cucurbita maxima (Rimu)	cgycmaB0887
Cucsa.322390	CmaCh06G005990	Cucurbita maxima (Rimu)	cgycmaB0899
Cucsa.322390	CmoCh16G012640	Cucurbita moschata (Rifu)	cgycmoB0885
Cucsa.322390	CmoCh06G006050	Cucurbita moschata (Rifu)	cgycmoB0896
Cucsa.322390	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	cgylsiB530
Cucsa.322390	Cp4.1LG14g10030	Cucurbita pepo (Zucchini)	cgycpeB0845
Cucsa.322390	Cp4.1LG08g09000	Cucurbita pepo (Zucchini)	cgycpeB0854
Cucsa.322390	MELO3C013791.2	Melon (DHL92) v3.6.1	cgymedB533
Cucsa.322390	CsaV3_3G001020	Cucumber (Chinese Long) v3	cgycucB499
Cucsa.322390	Cla97C10G185560	Watermelon (97103) v2	cgywmbB562
Cucsa.322390	BhiUN179G5	Wax gourd	cgywgoB655
Cucsa.322390	Carg19493	Silver-seed gourd	carcgyB0496
Cucsa.322390	Carg16285	Silver-seed gourd	carcgyB0759

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None