Cla008868 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008868
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 1357879 .. 1358268 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGAAGAGATCACCAATGGCGTTCCGCCTGAAGAAGGCATTCACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGTCGGCAACGTTCCCAACGGCTGAGATCATTCGTTTCCGACGATCGGACGGTAGGCATACGGATTGTCTTGGAAGATCAGAGGAGAATCGCTGAGAATTCTTCTGCGAGAAAGCTTGAACGTGCTTCGAGTTCAAGATACGGAAGCGATGAAGACGATGTCGATCAACGAGCGGAGATGTTCATTGATAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTAAGGTATTATAGAGTTAATAGCTACGAAACAGAGCACGAAGAGAGATCGTCGCCGGACGCAGCCGGTTAA

mRNA sequence

ATGGCTGAGAAGAGATCACCAATGGCGTTCCGCCTGAAGAAGGCATTCACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGTCGGCAACGTTCCCAACGGCTGAGATCATTCGTTTCCGACGATCGGACGGTAGGCATACGGATTGTCTTGGAAGATCAGAGGAGAATCGCTGAGAATTCTTCTGCGAGAAAGCTTGAACGTGCTTCGAGTTCAAGATACGGAAGCGATGAAGACGATGTCGATCAACGAGCGGAGATGTTCATTGATAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTAAGGTATTATAGAGTTAATAGCTACGAAACAGAGCACGAAGAGAGATCGTCGCCGGACGCAGCCGGTTAA

Coding sequence (CDS)

ATGGCTGAGAAGAGATCACCAATGGCGTTCCGCCTGAAGAAGGCATTCACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGTCGGCAACGTTCCCAACGGCTGAGATCATTCGTTTCCGACGATCGGACGGTAGGCATACGGATTGTCTTGGAAGATCAGAGGAGAATCGCTGAGAATTCTTCTGCGAGAAAGCTTGAACGTGCTTCGAGTTCAAGATACGGAAGCGATGAAGACGATGTCGATCAACGAGCGGAGATGTTCATTGATAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTAAGGTATTATAGAGTTAATAGCTACGAAACAGAGCACGAAGAGAGATCGTCGCCGGACGCAGCCGGTTAA

Protein sequence

MAEKRSPMAFRLKKAFTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIRIVLEDQRRIAENSSARKLERASSSRYGSDEDDVDQRAEMFIDNFRRQLRLERQISLQLRYYRVNSYETEHEERSSPDAAG

Homology

[Close]

BLAST of Cla008868 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.9e-43
Identity = 97/124 (78.23%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 1   MAEKRSPMAFRLKKAFTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIRIVLEDQRRIA 60
           MAEK+SPMA RL+KA  KL A +RLCL+ RQRS+RL SF SDD + VGIRIVLEDQ RIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSSARKLERASSSRYGSDEDDVDQRAEMFIDNFRRQLRLERQISLQLRYYRVNSYETEH 120
           E+S  RKLERASSSRYG  E+DVDQRAE+FI+NFRRQLRLERQISLQLRYYRVNSYETE+
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERS 124
           E+RS
Sbjct: 121 EQRS 124

[Close]

BLAST of Cla008868 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 1


Query: 8   MAFRLKKAFTKLTAFVRLCLVRRQRS-QRLRSFVSDDRTVGIRIVLEDQRRIAENSSARK 67
           MA RL++   KL AF+RLCL+ R+RS  R R+ + DD+T                  AR 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQT------------------ARN 60

Query: 68  LERASSSRYGSDE---DDVDQRAEMFIDNFRRQLRLERQISLQLRYYRV--NSYETEHEE 126
           LER SSSRY S E   DDVD RAE+FI+NFRRQLRLERQISLQLR Y V  NS+ET++EE
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 106

[Close]

BLAST of Cla008868 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 33  SQRLRSFVSDDRTVGIRIVLEDQRRIAENSSARKLERASSSRYGSDEDDVDQRAEMFIDN 92
           S  +R    +DR +G+  V+ED     ++   R LER  S    S +DDVD+RAE+FI N
Sbjct: 109 SGTIRRLSFNDR-IGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITN 168

Query: 93  FRRQLRLERQISLQLRYYRVNSYETEH 120
           FRRQL +ERQ+SLQLRYYR NS+  ++
Sbjct: 169 FRRQLLMERQVSLQLRYYRGNSFGRDY 194

[Close]

BLAST of Cla008868 vs. TrEMBL
Match: V4WAP0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010310mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.0e-11
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 3   EKRSPMAFRLKKAFTKLTAFVRLC---------LVRRQRSQRLRSFVSDDRTVGIRIVLE 62
           + RS M   LKKA  KL   + L          + R   SQ  RS   +DR +G++  + 
Sbjct: 19  QSRSLMQGHLKKAVKKLHMILSLIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIV 78

Query: 63  DQRRIAENSSARKLERASSSRYGSDEDDVDQRAEMFIDNFRRQLRLERQISLQLRYYRVN 117
           D R   E SS R L+R  S  Y  D DD+D+RAE+FI NFRR+L  ERQ+SL+LRY R N
Sbjct: 79  D-RDPDEGSSVRVLQRTKSCAYDGD-DDIDRRAEIFITNFRRRLLYERQVSLELRYRRGN 138

[Close]

BLAST of Cla008868 vs. TrEMBL
Match: A0A0D2SRH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G122600 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.0e-11
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1


Query: 11  RLKKAFTKLTAFVRLCLVR-------RQRSQRLRSFVSDDRTVGIRIVLEDQRRIAENSS 70
           RLK+A  ++ + +R  L +       R  S R R  +S +  +G+   + D+    E  S
Sbjct: 11  RLKRAVKQINSLLRFNLTKWRFSCFLRSLSTRRRPTLSFNDRLGLHGCIVDEEEEEEEES 70

Query: 71  ARK-----LERASSSRYGSDEDDVDQRAEMFIDNFRRQLRLERQISLQLRYYRVNSYE 117
            +K     L R +S  Y S +DDVDQRAE+FI NFRRQL LERQ+SLQLRY R  S E
Sbjct: 71  NKKGPVRALHRTTS--YASADDDVDQRAELFISNFRRQLWLERQVSLQLRYCRSRSLE 126

[Close]

BLAST of Cla008868 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 9.9e-43
Identity = 97/124 (78.23%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 1   MAEKRSPMAFRLKKAFTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIRIVLEDQRRIA 60
           MAEK+SPMA RL+KA  KL A +RLCL+ RQRS+RL SF SDD + VGIRIVLEDQ RIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSSARKLERASSSRYGSDEDDVDQRAEMFIDNFRRQLRLERQISLQLRYYRVNSYETEH 120
           E+S  RKLERASSSRYG  E+DVDQRAE+FI+NFRRQLRLERQISLQLRYYRVNSYETE+
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERS 124
           E+RS
Sbjct: 121 EQRS 124

[Close]

BLAST of Cla008868 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-39
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 1


Query: 8   MAFRLKKAFTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIRIVLEDQRRIAENSSARK 67
           MA RL+KA  KL A +RLCL+ RQRS+RL SF SDD + VGIRIVLEDQ RIAE+S  RK
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 68  LERASSSRYGSDEDDVDQRAEMFIDNFRRQLRLERQISLQLRYYRVNSYETEHEERS 124
           LERASSSRYG  E+DVDQRAE+FI+NFRRQLRLERQISLQLRYYRVNSYETE+E+RS
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRS 117

[Close]

BLAST of Cla008868 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 1


Query: 8   MAFRLKKAFTKLTAFVRLCLVRRQRS-QRLRSFVSDDRTVGIRIVLEDQRRIAENSSARK 67
           MA RL++   KL AF+RLCL+ R+RS  R R+ + DD+T                  AR 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQT------------------ARN 60

Query: 68  LERASSSRYGSDE---DDVDQRAEMFIDNFRRQLRLERQISLQLRYYRV--NSYETEHEE 126
           LER SSSRY S E   DDVD RAE+FI+NFRRQLRLERQISLQLR Y V  NS+ET++EE
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 106

[Close]

BLAST of Cla008868 vs. NCBI nr
Match: gi|764644842|ref|XP_011457409.1| (PREDICTED: uncharacterized protein LOC105349439 [Fragaria vesca subsp. vesca])

HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 1


Query: 11  RLKKAFTKLTAFVRLCLVRRQRSQ----------RLRSFVSDDRTVGIRIVLEDQRRIAE 70
           RL++A  K++  + L + R Q +           R+RSF  +DR+ G+    +      E
Sbjct: 12  RLRRAVKKVSFLLNLNVNRWQIASMLSRSSSAVHRIRSF--NDRSAGLTAACDSDENSEE 71

Query: 71  NS-----SARKLERASSSRYGSDEDDVDQRAEMFIDNFRRQLRLERQISLQLRYYRVNSY 117
           +S     S+R L+R  S  Y SD+DD+DQRAEMFI NFRRQL++ERQ+SL+LRY R NS 
Sbjct: 72  DSVSSRGSSRHLQRTIS--YPSDQDDIDQRAEMFIANFRRQLQIERQVSLELRYCRGNSL 128

[Close]

BLAST of Cla008868 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 33  SQRLRSFVSDDRTVGIRIVLEDQRRIAENSSARKLERASSSRYGSDEDDVDQRAEMFIDN 92
           S  +R    +DR +G+  V+ED     ++   R LER  S    S +DDVD+RAE+FI N
Sbjct: 109 SGTIRRLSFNDR-IGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITN 168

Query: 93  FRRQLRLERQISLQLRYYRVNSYETEH 120
           FRRQL +ERQ+SLQLRYYR NS+  ++
Sbjct: 169 FRRQLLMERQVSLQLRYYRGNSFGRDY 194

The following BLAST results are available for this feature:

BLAST of Cla008868 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	6.9e-43	78.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	1.1e-19	54.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
B9ILG0_POPTR	1.1e-11	48.28	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2	[more]
V4WAP0_9ROSI	7.0e-11	43.09	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010310mg PE=...	[more]
A0A0D2SRH1_GOSRA	7.0e-11	42.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G122600 PE=4 SV=1	[more]

BLAST of Cla008868 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	9.9e-43	78.23	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	5.1e-39	77.78	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	1.5e-19	54.03	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|764644842\|ref\|XP_011457409.1\|	9.1e-12	42.15	PREDICTED: uncharacterized protein LOC105349439 [Fragaria vesca subsp. vesca]	[more]
gi\|566214045\|ref\|XP_002324391.2\|	1.5e-11	48.28	hypothetical protein POPTR_0018s03620g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010200	response to chitin
biological_process	GO:0071456	cellular response to hypoxia
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008868	Cla008868.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 79..109 score: 8.7
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 29..119 score: 6.9
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 29..119 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008868	Csa3G004520	Cucumber (Chinese Long) v2	cuwmB200
Cla008868	MELO3C013791	Melon (DHL92) v3.5.1	mewmB446
Cla008868	CSPI03G00980	Wild cucumber (PI 183967)	cpiwmB200
Cla008868	Cucsa.322390	Cucumber (Gy14) v1	cgywmB583
Cla008868	CmaCh06G005990	Cucurbita maxima (Rimu)	cmawmB789
Cla008868	CmaCh16G012210	Cucurbita maxima (Rimu)	cmawmB292
Cla008868	CmoCh06G006050	Cucurbita moschata (Rifu)	cmowmB783
Cla008868	CmoCh16G012640	Cucurbita moschata (Rifu)	cmowmB285
Cla008868	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008868	Cp4.1LG14g10030	Cucurbita pepo (Zucchini)	cpewmB202
Cla008868	Cp4.1LG08g09000	Cucurbita pepo (Zucchini)	cpewmB829
Cla008868	CsGy3G000930	Cucumber (Gy14) v2	cgybwmB188
Cla008868	MELO3C013791.2	Melon (DHL92) v3.6.1	medwmB438
Cla008868	Carg19493	Silver-seed gourd	carwmB0425
Cla008868	Carg16285	Silver-seed gourd	carwmB0678
Cla008868	CsaV3_3G001020	Cucumber (Chinese Long) v3	cucwmB209
Cla008868	BhiUN179G5	Wax gourd	wgowmB575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008868	Watermelon (97103) v2	wmwmbB056
Cla008868	Watermelon (Charleston Gray)	wcgwmB056