Carg19493 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19493
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cotton fiber protein
Location	Cucurbita_argyrosperma_scaffold_204 : 476422 .. 476814 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

mRNA sequence

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Coding sequence (CDS)

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCATGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTTGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Protein sequence

MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPPFSSSIR

Homology

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BLAST of Carg19493 vs. NCBI nr
Match: KGN55687.1 (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 6.1e-28
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDS-DGRTAGLRSILGDES-IV 60
           MAE  +P+  R++KAL KL A +RLC + R  SRR+ SFDS D +  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 120
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EARSP 124
           E RSP
Sbjct: 121 EQRSP 125

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BLAST of Carg19493 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 8.8e-27
Identity = 71/118 (60.17%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVR----LCHVFRPPSRRMRSFDSDGRTAGLRSILGDES 60
           MAE  +P++ R+KKA+ K+TA +R    LC   R PS R+RSF    RT GLRS L DE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSS 115
           I E CS+R+LER  S R G+ EDDVD+R+QIFIDNF R+L LERQISL+LRYY INSS
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSS 118

[Close]

BLAST of Carg19493 vs. NCBI nr
Match: XP_011652707.1 (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 9.7e-26
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 11  RMKKALTKLTAFVRLCHVFRPPSRRMRSFDS-DGRTAGLRSILGDES-IVEKCSVRKLER 70
           R++KAL KL A +RLC + R  SRR+ SFDS D +  G+R +L D+S I E   VRKLER
Sbjct: 4   RLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLER 63

Query: 71  GESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 124
             SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +YE RSP
Sbjct: 64  ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Carg19493 vs. NCBI nr
Match: KGN55686.1 (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLE 67
           + LR+++ L KL AF+RLC + R   RR     S  RT   R++L D+      + R LE
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLR---RR-----SIYRT---RNVLEDDQ-----TARNLE 60

Query: 68  RGESSRNGSC---EDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGI--NSSEIDYE 120
           R  SSR  SC   EDDVD RA+IFI+NFRRQL LERQISL+LR YG+  NS E DYE
Sbjct: 61  RDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYE 101

[Close]

BLAST of Carg19493 vs. NCBI nr
Match: XP_021596711.1 (uncharacterized protein LOC110603324 [Manihot esculenta] >OAY27569.1 hypothetical protein MANES_16G135500 [Manihot esculenta])

HSP 1 Score: 77.4 bits (189), Expect = 4.0e-11
Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 67
           V+  +K+A+ KL   +       R+  + R  SRR R    + R  GL   + D    E 
Sbjct: 8   VLGHLKRAVKKLNFLLSFNLRRWRVASILRNVSRRRRRLSFNDR-LGLHGCIEDVESDEN 67

Query: 68  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 119
             VR L+R   +R+ + EDD+DQRA+IFI+NFRRQL+LERQISL+LRYY  NS   DY
Sbjct: 68  KRVRALQR---TRSYASEDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNSFTRDY 121

[Close]

BLAST of Carg19493 vs. TAIR10
Match: AT5G57510.1 (unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 72  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 124
           S + S ++D+D +A++FI NF RQL +ERQISL+L+Y   N+   +Y  RSP
Sbjct: 81  SYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

[Close]

BLAST of Carg19493 vs. TrEMBL
Match: tr|A0A0A0L4Z8|A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-28
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDS-DGRTAGLRSILGDES-IV 60
           MAE  +P+  R++KAL KL A +RLC + R  SRR+ SFDS D +  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 120
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EARSP 124
           E RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Carg19493 vs. TrEMBL
Match: tr|A0A0A0L6A3|A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLE 67
           + LR+++ L KL AF+RLC + R   RR     S  RT   R++L D+      + R LE
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLR---RR-----SIYRT---RNVLEDDQ-----TARNLE 60

Query: 68  RGESSRNGSC---EDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGI--NSSEIDYE 120
           R  SSR  SC   EDDVD RA+IFI+NFRRQL LERQISL+LR YG+  NS E DYE
Sbjct: 61  RDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYE 101

[Close]

BLAST of Carg19493 vs. TrEMBL
Match: tr|A0A2C9UBN9|A0A2C9UBN9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-11
Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 67
           V+  +K+A+ KL   +       R+  + R  SRR R    + R  GL   + D    E 
Sbjct: 8   VLGHLKRAVKKLNFLLSFNLRRWRVASILRNVSRRRRRLSFNDR-LGLHGCIEDVESDEN 67

Query: 68  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 119
             VR L+R   +R+ + EDD+DQRA+IFI+NFRRQL+LERQISL+LRYY  NS   DY
Sbjct: 68  KRVRALQR---TRSYASEDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNSFTRDY 121

[Close]

BLAST of Carg19493 vs. TrEMBL
Match: tr|A0A1R3J730|A0A1R3J730_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 67
           ++ R KKA+ KL + +       RL    R  S R R   S     GL S L DE    +
Sbjct: 8   ILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDRLGLHSFLEDEETNGR 67

Query: 68  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEID 118
            SVR L+R  S   G+ +DDVD+RA+IFI NFRRQL LERQ+SL+LRY    S + D
Sbjct: 68  SSVRALQRVRS--YGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTTSFDTD 122

[Close]

BLAST of Carg19493 vs. TrEMBL
Match: tr|A0A1R3IU67|A0A1R3IU67_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 51/117 (43.59%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 8   VVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 67
           ++ R KKA+ KL + +       RL    R  S + R   S     GL S L DE     
Sbjct: 8   ILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGKWRPTLSFNDRLGLHSFLEDEETNGT 67

Query: 68  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEID 118
            SVR L+R  S   G+ +DDVD+RA+IFI NFRRQL LERQ+SL+LRY    S + D
Sbjct: 68  SSVRALQRVRS--YGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTRSFDTD 122

The following BLAST results are available for this feature:

BLAST of Carg19493 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55687.1	6.1e-28	60.00	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
XP_022145292.1	8.8e-27	60.17	uncharacterized protein LOC111014780 [Momordica charantia]	[more]
XP_011652707.1	9.7e-26	61.74	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
KGN55686.1	1.5e-13	52.14	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
XP_021596711.1	4.0e-11	44.07	uncharacterized protein LOC110603324 [Manihot esculenta] >OAY27569.1 hypothetica...	[more]

BLAST of Carg19493 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	4.7e-06	48.08	unknown protein	[more]

BLAST of Carg19493 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19493 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4Z8\|A0A0A0L4Z8_CUCSA	4.0e-28	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
tr\|A0A0A0L6A3\|A0A0A0L6A3_CUCSA	9.6e-14	52.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1	[more]
tr\|A0A2C9UBN9\|A0A2C9UBN9_MANES	2.6e-11	44.07	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=...	[more]
tr\|A0A1R3J730\|A0A1R3J730_9ROSI	2.2e-10	44.44	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1	[more]
tr\|A0A1R3IU67\|A0A1R3IU67_COCAP	1.1e-09	43.59	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19493-RA	Carg19493-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 78..108 e-value: 8.7E-9 score: 34.7
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 33..114
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 33..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19493	Cla008868	Watermelon (97103) v1	carwmB0425
Carg19493	Csa3G004520	Cucumber (Chinese Long) v2	carcuB0462
Carg19493	MELO3C013791	Melon (DHL92) v3.5.1	carmeB0437
Carg19493	ClCG10G000950	Watermelon (Charleston Gray)	carwcgB0421
Carg19493	CSPI03G00980	Wild cucumber (PI 183967)	carcpiB0467
Carg19493	Cucsa.322390	Cucumber (Gy14) v1	carcgyB0496
Carg19493	CmaCh06G005990	Cucurbita maxima (Rimu)	carcmaB0597
Carg19493	CmaCh16G012210	Cucurbita maxima (Rimu)	carcmaB0596
Carg19493	CmoCh06G006050	Cucurbita moschata (Rifu)	carcmoB0582
Carg19493	CmoCh16G012640	Cucurbita moschata (Rifu)	carcmoB0581
Carg19493	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	carlsiB389
Carg19493	Cp4.1LG14g10030	Cucurbita pepo (Zucchini)	carcpeB0601
Carg19493	Cp4.1LG08g09000	Cucurbita pepo (Zucchini)	carcpeB0604
Carg19493	CsGy3G000920	Cucumber (Gy14) v2	carcgybB0438
Carg19493	MELO3C013791.2	Melon (DHL92) v3.6.1	carmedB0439
Carg19493	CsaV3_3G001020	Cucumber (Chinese Long) v3	carcucB0462
Carg19493	Cla97C10G185560	Watermelon (97103) v2	carwmbB0453
Carg19493	BhiUN179G5	Wax gourd	carwgoB0517

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19493	Carg16285	Silver-seed gourd	carcarB442

The following block(s) are covering this gene:

None