Cp4.1LG08g09000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g09000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DUF761 domain protein
Location	Cp4.1LG08 : 7126041 .. 7126430 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTGCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

mRNA sequence

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTGCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

Coding sequence (CDS)

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTGCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

Protein sequence

MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTVGLRSFLEDERIVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEEKSPPYPSIR

Homology

[Close]

BLAST of Cp4.1LG08g09000 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.8e-30
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDD-RTVGLRSFLEDE-RIV 60
           MA+KKSP+  RL+K+ +KL A LRLC+  RQ SRRL SF SDD + VG+R  LED+ RI 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETES 120
           E+  VRKLERASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE 
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EEKSP 124
           E++SP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Cp4.1LG08g09000 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 1


Query: 8   LLFRLKKSAIKLTAFLRLCVA-RRQNSRRLRSFGSDDRTVGLRSFLEDERIVENRSVRKL 67
           +  RL+++  KL AFLRLC+  RR++  R R+   DD+T                  R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 68  ERASSASYVN---FEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRV--NSSETESEEK 127
           ER SS+ Y +   FEDDVD R++IFI+ F RQLRLERQISLQLR   V  NS ET+ EE 
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 108

[Close]

BLAST of Cp4.1LG08g09000 vs. TrEMBL
Match: A0A0D2SRH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G122600 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-08
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRL--------CVARRQNSRRLRSFGSDDRTVGLRSFL 60
           M ++   ++ RLK++  ++ + LR         C  R  ++RR  +   +DR +GL   +
Sbjct: 1   MGRENWSVMGRLKRAVKQINSLLRFNLTKWRFSCFLRSLSTRRRPTLSFNDR-LGLHGCI 60

Query: 61  EDERIVENRS------VRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQL 116
            DE   E         VR L R +S  Y + +DDVD+R+++FI  F RQL LERQ+SLQL
Sbjct: 61  VDEEEEEEEESNKKGPVRALHRTTS--YASADDDVDQRAELFISNFRRQLWLERQVSLQL 120

[Close]

BLAST of Cp4.1LG08g09000 vs. TrEMBL
Match: V4UGU4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010207mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-07
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 4   KKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTVGLRSFLEDERIVENRSV 63
           KK+     +  S IKL+ +    + R   S+  RS   +DR +GL+  + D    E  SV
Sbjct: 35  KKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVDRDPDEGSSV 94

Query: 64  RKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNS 114
           R L+R  S +Y + +DD+D+R++IFI  F RQL  ERQ+SL+LRY R NS
Sbjct: 95  RVLQRTKSCAY-DGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNS 142

[Close]

BLAST of Cp4.1LG08g09000 vs. TrEMBL
Match: A0A067FVT7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039446mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-07
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 4   KKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTVGLRSFLEDERIVENRSV 63
           KK+     +  S IKL+ +    + R   S+  RS   +DR +GL+  + D    E  SV
Sbjct: 35  KKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVDRDPDEGSSV 94

Query: 64  RKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNS 114
           R L+R  S +Y + +DD+D+R++IFI  F RQL  ERQ+SL+LRY R NS
Sbjct: 95  RVLQRTKSCAY-DGDDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNS 142

[Close]

BLAST of Cp4.1LG08g09000 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-29
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 1


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDD-RTVGLRSFLEDE-RIV 60
           MA+KKSP+  RL+K+ +KL A LRLC+  RQ SRRL SF SDD + VG+R  LED+ RI 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETES 120
           E+  VRKLERASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE 
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EEKSP 124
           E++SP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Cp4.1LG08g09000 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 11  RLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDD-RTVGLRSFLEDE-RIVENRSVRKLER 70
           RL+K+ +KL A LRLC+  RQ SRRL SF SDD + VG+R  LED+ RI E+  VRKLER
Sbjct: 4   RLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLER 63

Query: 71  ASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEEKSP 124
           ASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE E++SP
Sbjct: 64  ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Cp4.1LG08g09000 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 1


Query: 8   LLFRLKKSAIKLTAFLRLCVA-RRQNSRRLRSFGSDDRTVGLRSFLEDERIVENRSVRKL 67
           +  RL+++  KL AFLRLC+  RR++  R R+   DD+T                  R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 68  ERASSASYVN---FEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRV--NSSETESEEK 127
           ER SS+ Y +   FEDDVD R++IFI+ F RQLRLERQISLQLR   V  NS ET+ EE 
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 108

[Close]

BLAST of Cp4.1LG08g09000 vs. NCBI nr
Match: gi|823232804|ref|XP_012449080.1| (PREDICTED: uncharacterized protein LOC105772337 [Gossypium raimondii])

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRL--------CVARRQNSRRLRSFGSDDRTVGLRSFL 60
           M ++   ++ RLK++  ++ + LR         C  R  ++RR  +   +DR +GL   +
Sbjct: 1   MGRENWSVMGRLKRAVKQINSLLRFNLTKWRFSCFLRSLSTRRRPTLSFNDR-LGLHGCI 60

Query: 61  EDERIVENRS------VRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQL 116
            DE   E         VR L R +S  Y + +DDVD+R+++FI  F RQL LERQ+SLQL
Sbjct: 61  VDEEEEEEEESNKKGPVRALHRTTS--YASADDDVDQRAELFISNFRRQLWLERQVSLQL 120

[Close]

BLAST of Cp4.1LG08g09000 vs. NCBI nr
Match: gi|764644842|ref|XP_011457409.1| (PREDICTED: uncharacterized protein LOC105349439 [Fragaria vesca subsp. vesca])

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1


Query: 8   LLFRLKKSAIKLTAFLRLCVARRQNS----------RRLRSFGSDDRTVGLRSFLEDERI 67
           LL RL+++  K++  L L V R Q +           R+RSF  +DR+ GL +  + +  
Sbjct: 9   LLSRLRRAVKKVSFLLNLNVNRWQIASMLSRSSSAVHRIRSF--NDRSAGLTAACDSDEN 68

Query: 68  VENRSV------RKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRV 119
            E  SV      R L+R  + SY + +DD+D+R+++FI  F RQL++ERQ+SL+LRYCR 
Sbjct: 69  SEEDSVSSRGSSRHLQR--TISYPSDQDDIDQRAEMFIANFRRQLQIERQVSLELRYCRG 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g09000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g09000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	8.8e-30	64.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	1.1e-11	47.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
A0A0D2SRH1_GOSRA	7.2e-08	37.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G122600 PE=4 SV=1	[more]
V4UGU4_9ROSI	4.7e-07	40.91	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010207mg PE=...	[more]
A0A067FVT7_CITSI	4.7e-07	40.91	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039446mg PE=4 S...	[more]

BLAST of Cp4.1LG08g09000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g09000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	1.3e-29	64.00	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	2.2e-26	64.35	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	1.5e-11	47.20	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|823232804\|ref\|XP_012449080.1\|	1.0e-07	37.21	PREDICTED: uncharacterized protein LOC105772337 [Gossypium raimondii]	[more]
gi\|764644842\|ref\|XP_011457409.1\|	2.3e-07	38.58	PREDICTED: uncharacterized protein LOC105349439 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010200	response to chitin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g09000.1	Cp4.1LG08g09000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 78..109 score: 2.
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 28..118 score: 1.8
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 28..118 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g09000	Cucsa.322390	Cucumber (Gy14) v1	cgycpeB0854
Cp4.1LG08g09000	CmaCh16G012210	Cucurbita maxima (Rimu)	cmacpeB363
Cp4.1LG08g09000	CmaCh06G005990	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g09000	CmoCh06G006050	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g09000	CmoCh16G012640	Cucurbita moschata (Rifu)	cmocpeB327
Cp4.1LG08g09000	Cla008868	Watermelon (97103) v1	cpewmB829
Cp4.1LG08g09000	Csa3G004520	Cucumber (Chinese Long) v2	cpecuB863
Cp4.1LG08g09000	MELO3C013791	Melon (DHL92) v3.5.1	cpemeB808
Cp4.1LG08g09000	ClCG10G000980	Watermelon (Charleston Gray)	cpewcgB772
Cp4.1LG08g09000	CSPI03G00980	Wild cucumber (PI 183967)	cpecpiB865
Cp4.1LG08g09000	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	cpelsiB725
Cp4.1LG08g09000	MELO3C013791.2	Melon (DHL92) v3.6.1	cpemedB952
Cp4.1LG08g09000	CsaV3_3G001020	Cucumber (Chinese Long) v3	cpecucB1059
Cp4.1LG08g09000	BhiUN179G5	Wax gourd	cpewgoB1137
Cp4.1LG08g09000	CsGy3G000930	Cucumber (Gy14) v2	cgybcpeB456
Cp4.1LG08g09000	Carg16285	Silver-seed gourd	carcpeB0957
Cp4.1LG08g09000	Carg19493	Silver-seed gourd	carcpeB0604

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g09000	Cp4.1LG14g10030	Cucurbita pepo (Zucchini)	cpecpeB249

The following block(s) are covering this gene:

None