Csa3G004520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G004520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR008480 (Protein of unknown function DUF761, plant)
Location	Chr3 : 667522 .. 667866 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTTCGCCTCGAGGAGACATTAAACAAACTCAAAGCATTTCTTCGTCTCTGCCTCCTTCTCCGACGACGCTCCATCTACCGGACACGAAATGTCTTGGAAGATGATCAAACCGCGAGAAACCTTGAACGTGATTCGAGTTCTAGGTATGAGAGCTGTGAAGAATTTGAAGACGATGTGGATCACCGAGCGGAGATCTTCATCGAGAATTTTCGTCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTTGTATGGAGTTAATAATAATAGCTTTGAAACAGATTATGAAGAAATATTGCCGCCACCACCACCTCCACCGCCGATTGTATGA

mRNA sequence

ATGGCGCTTCGCCTCGAGGAGACATTAAACAAACTCAAAGCATTTCTTCGTCTCTGCCTCCTTCTCCGACGACGCTCCATCTACCGGACACGAAATGTCTTGGAAGATGATCAAACCGCGAGAAACCTTGAACGTGATTCGAGTTCTAGGTATGAGAGCTGTGAAGAATTTGAAGACGATGTGGATCACCGAGCGGAGATCTTCATCGAGAATTTTCGTCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTTGTATGGAGTTAATAATAATAGCTTTGAAACAGATTATGAAGAAATATTGCCGCCACCACCACCTCCACCGCCGATTGTATGA

Coding sequence (CDS)

ATGGCGCTTCGCCTCGAGGAGACATTAAACAAACTCAAAGCATTTCTTCGTCTCTGCCTCCTTCTCCGACGACGCTCCATCTACCGGACACGAAATGTCTTGGAAGATGATCAAACCGCGAGAAACCTTGAACGTGATTCGAGTTCTAGGTATGAGAGCTGTGAAGAATTTGAAGACGATGTGGATCACCGAGCGGAGATCTTCATCGAGAATTTTCGTCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTTGTATGGAGTTAATAATAATAGCTTTGAAACAGATTATGAAGAAATATTGCCGCCACCACCACCTCCACCGCCGATTGTATGA

Protein sequence

MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTARNLERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPPPIV*

Homology

[Close]

BLAST of Csa3G004520 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 8.9e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTARNLERDSSSRYESCEEFEDD 60
           MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTARNLERDSSSRYESCEEFEDD
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTARNLERDSSSRYESCEEFEDD 60

Query: 61  VDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPPPIV 115
           VDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPPPIV
Sbjct: 61  VDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPPPIV 114

[Close]

BLAST of Csa3G004520 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 69/123 (56.10%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 1   MALRLEETLNKLKAFLRLCLLLRRRSI------------YRTRNVLEDDQT------ARN 60
           MA RL++ L KLKA LRLCLL R+RS                R VLED          R 
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 106
           LER SSSRY     +E+DVD RAEIFIENFRRQLRLERQISLQLR Y V  NS+ET+YE+
Sbjct: 68  LERASSSRYGG---YEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEYEQ 125

[Close]

BLAST of Csa3G004520 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 34  LEDDQTARNLERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNN 93
           +E D  ++ +      R       +DDVD RAEIFI NFRRQL +ERQ+SLQLR Y    
Sbjct: 130 VESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQVSLQLRYY--RG 189

Query: 94  NSFETDY 101
           NSF  DY
Sbjct: 190 NSFGRDY 194

[Close]

BLAST of Csa3G004520 vs. TrEMBL
Match: A0A067KN30_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08677 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 26/40 (65.00%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFE 98
           +DD+D+RAE+FIENFRRQL++ERQISL+L+    N+NSF+
Sbjct: 93  QDDIDNRAELFIENFRRQLQIERQISLELKYLQGNSNSFK 132

[Close]

BLAST of Csa3G004520 vs. TrEMBL
Match: M5XR52_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017712mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-06
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 34  LEDDQTARN--LERDSSSR-YESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLR 88
           +EDD+   N    R  S+R ++   + +DDVDHRA++FI NFRRQLR ERQ+SL+LR
Sbjct: 123 IEDDKADENRCFRRVLSTRTHDRASDDDDDVDHRADVFIANFRRQLRFERQVSLELR 179

[Close]

BLAST of Csa3G004520 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSF 97
           ++D+D++AE+FI NF RQL++ERQISL+L+    NN SF
Sbjct: 87  DEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSF 125

[Close]

BLAST of Csa3G004520 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTARNLERDSSSRYESCEEFEDD 60
           MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTARNLERDSSSRYESCEEFEDD
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTARNLERDSSSRYESCEEFEDD 60

Query: 61  VDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPPPIV 115
           VDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPPPIV
Sbjct: 61  VDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPPPIV 114

[Close]

BLAST of Csa3G004520 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-19
Identity = 69/123 (56.10%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 1   MALRLEETLNKLKAFLRLCLLLRRRSI------------YRTRNVLEDDQT------ARN 60
           MA RL++ L KLKA LRLCLL R+RS                R VLED          R 
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 106
           LER SSSRY     +E+DVD RAEIFIENFRRQLRLERQISLQLR Y V  NS+ET+YE+
Sbjct: 61  LERASSSRYGG---YEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEYEQ 118

[Close]

BLAST of Csa3G004520 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-19
Identity = 69/123 (56.10%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 1   MALRLEETLNKLKAFLRLCLLLRRRSI------------YRTRNVLEDDQT------ARN 60
           MA RL++ L KLKA LRLCLL R+RS                R VLED          R 
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 106
           LER SSSRY     +E+DVD RAEIFIENFRRQLRLERQISLQLR Y V  NS+ET+YE+
Sbjct: 68  LERASSSRYGG---YEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEYEQ 125

[Close]

BLAST of Csa3G004520 vs. NCBI nr
Match: gi|729331761|ref|XP_010536917.1| (PREDICTED: uncharacterized protein LOC104811795 [Tarenaya hassleriana])

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 34  LEDDQTARNLERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNN 93
           + DD T  + +R +  R  S    ++D+D +AE+FI NF RQL++ERQISL+L+ Y  NN
Sbjct: 67  VRDDSTGSSTQRGALYRTASYPSSDEDIDKKAEMFIANFYRQLKIERQISLELKYYRHNN 126

Query: 94  NSFE 98
           +SF+
Sbjct: 127 SSFD 130

[Close]

BLAST of Csa3G004520 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa])

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 34  LEDDQTARNLERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNN 93
           +E D  ++ +      R       +DDVD RAEIFI NFRRQL +ERQ+SLQLR Y    
Sbjct: 130 VESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQVSLQLRYY--RG 189

Query: 94  NSFETDY 101
           NSF  DY
Sbjct: 190 NSFGRDY 194

The following BLAST results are available for this feature:

BLAST of Csa3G004520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6A3_CUCSA	8.9e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
A0A0A0L4Z8_CUCSA	3.6e-19	56.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
B9ILG0_POPTR	2.7e-06	49.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2	[more]
A0A067KN30_JATCU	4.6e-06	65.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08677 PE=4 SV=1	[more]
M5XR52_PRUPE	7.9e-06	52.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017712mg PE=4 SV=1	[more]

BLAST of Csa3G004520 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	1.1e-06	56.41	unknown protein	[more]

BLAST of Csa3G004520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200553\|gb\|KGN55686.1\|	1.3e-57	100.00	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	5.2e-19	56.10	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200554\|gb\|KGN55687.1\|	5.2e-19	56.10	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|729331761\|ref\|XP_010536917.1\|	7.8e-07	45.31	PREDICTED: uncharacterized protein LOC104811795 [Tarenaya hassleriana]	[more]
gi\|566214045\|ref\|XP_002324391.2\|	3.9e-06	49.25	hypothetical protein POPTR_0018s03620g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010200	response to chitin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU161877	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G004520.1	Csa3G004520.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU161877	CU161877	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 58..85 score: 2.1
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 35..100 score: 6.6
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 35..100 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G004520	Cla008868	Watermelon (97103) v1	cuwmB200
Csa3G004520	MELO3C013791	Melon (DHL92) v3.5.1	cumeB243
Csa3G004520	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	culsiB228
Csa3G004520	MELO3C013791.2	Melon (DHL92) v3.6.1	cumedB224
Csa3G004520	BhiUN179G5	Wax gourd	cuwgoB337
Csa3G004520	CSPI03G00980	Wild cucumber (PI 183967)	cpicuB120
Csa3G004520	Cucsa.322390	Cucumber (Gy14) v1	cgycuB458
Csa3G004520	CmaCh06G005990	Cucurbita maxima (Rimu)	cmacuB817
Csa3G004520	CmaCh16G012210	Cucurbita maxima (Rimu)	cmacuB326
Csa3G004520	CmoCh16G012640	Cucurbita moschata (Rifu)	cmocuB316
Csa3G004520	CmoCh06G006050	Cucurbita moschata (Rifu)	cmocuB809
Csa3G004520	Cp4.1LG14g10030	Cucurbita pepo (Zucchini)	cpecuB212
Csa3G004520	Cp4.1LG08g09000	Cucurbita pepo (Zucchini)	cpecuB863
Csa3G004520	CsGy3G000920	Cucumber (Gy14) v2	cgybcuB109
Csa3G004520	Carg19493	Silver-seed gourd	carcuB0462
Csa3G004520	Carg16285	Silver-seed gourd	carcuB0701

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G004520	Watermelon (Charleston Gray)	cuwcgB189
Csa3G004520	Watermelon (97103) v2	cuwmbB181