Cp4.1LG14g10030 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g10030
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG14 : 8486647 .. 8487054 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGGGGAAAATGGCAGAGAACGCAACGCCAATGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCTTCTGTCACGTTTGCCGGCCGCCTTCCCGGCGGATGCGGTCATTCGATTCCGACGGTCAGACGGCAGGGCTGAGGAGTATCTTGGGAGACGAAAGCATCATTGAGAAATGCTCTGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGTATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

mRNA sequence

ATGGAAAAGGGGAAAATGGCAGAGAACGCAACGCCAATGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCTTCTGTCACGTTTGCCGGCCGCCTTCCCGGCGGATGCGGTCATTCGATTCCGACGGTCAGACGGCAGGGCTGAGGAGTATCTTGGGAGACGAAAGCATCATTGAGAAATGCTCTGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGTATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Coding sequence (CDS)

ATGGAAAAGGGGAAAATGGCAGAGAACGCAACGCCAATGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCTTCTGTCACGTTTGCCGGCCGCCTTCCCGGCGGATGCGGTCATTCGATTCCGACGGTCAGACGGCAGGGCTGAGGAGTATCTTGGGAGACGAAAGCATCATTGAGAAATGCTCTGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGTATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Protein sequence

MEKGKMAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDGQTAGLRSILGDESIIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPPFSSSIR

Homology

[Close]

BLAST of Cp4.1LG14g10030 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-29
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDG-QTAGLRSILGDES-II 65
           MAE  +PM  R++KAL KL A +R C + R  SRR+ SFDSD  Q  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 66  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 125
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 126 EARSP 129
           E RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Cp4.1LG14g10030 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 62/123 (50.41%), Postives = 72/123 (58.54%), Query Frame = 1


Query: 13  MVLRMKKALTKLTAFVRFCHVCRPPS-RRMRSFDSDGQTAGLRSILGDESIIEKCSVRKL 72
           M LR+++ L KL AF+R C + R  S  R R+   D QTA                 R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 73  ERGESSRNGSCE---DDVDQRAQIFIDNFRRQLMLERQISLKLRYYGI--NSSEIDYEAR 130
           ER  SSR  SCE   DDVD RA+IFI+NFRRQL LERQISL+LR YG+  NS E DYE  
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 106

[Close]

BLAST of Cp4.1LG14g10030 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 52  GLRSILGD-ESIIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLK 111
           GL  ++ D ES  +   VR LER  S    S +DDVD+RA+IFI NFRRQL++ERQ+SL+
Sbjct: 122 GLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQVSLQ 181

Query: 112 LRYYGINSSEIDY 124
           LRYY  NS   DY
Sbjct: 182 LRYYRGNSFGRDY 194

[Close]

BLAST of Cp4.1LG14g10030 vs. TrEMBL
Match: B9RNM1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0918640 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 1


Query: 4   GKMAENATPMVLRMKKALTKLTAFVRFC-----------HVCRPPSRRMRSFDSDGQTAG 63
           G+  +    ++  +KKA+ KL   +RF            +V + P  R++SF+      G
Sbjct: 2   GRQRQQNWTVLGHLKKAVKKLNFLLRFNLRGWRIASIVRNVSKRPQLRLKSFND---RLG 61

Query: 64  LRSILGDESIIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLR 123
           L   + D        V+ L+R   +R+ + ++D+DQRA+IFI NFRRQL+LERQ+SL++R
Sbjct: 62  LHGCIEDLESDRSEMVKTLQR---TRSYASDEDIDQRAEIFIANFRRQLLLERQVSLQVR 121

[Close]

BLAST of Cp4.1LG14g10030 vs. TrEMBL
Match: A0A0D2SRH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G122600 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 1


Query: 16  RMKKALTKLTAFVRF--------CHVCRPPSRRMRSFDSDGQTAGLRSILGDESIIE--- 75
           R+K+A+ ++ + +RF        C + R  S R R   S     GL   + DE   E   
Sbjct: 11  RLKRAVKQINSLLRFNLTKWRFSCFL-RSLSTRRRPTLSFNDRLGLHGCIVDEEEEEEEE 70

Query: 76  ---KCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSE 121
              K  VR L R  S    S +DDVDQRA++FI NFRRQL LERQ+SL+LRY    S E
Sbjct: 71  SNKKGPVRALHRTTSY--ASADDDVDQRAELFISNFRRQLWLERQVSLQLRYCRSRSLE 126

[Close]

BLAST of Cp4.1LG14g10030 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 77  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 129
           S + S ++D+D +A++FI NF RQL +ERQISL+L+Y   N+   +Y  RSP
Sbjct: 81  SYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

[Close]

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-29
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDG-QTAGLRSILGDES-II 65
           MAE  +PM  R++KAL KL A +R C + R  SRR+ SFDSD  Q  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 66  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 125
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 126 EARSP 129
           E RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-26
Identity = 72/118 (61.02%), Postives = 86/118 (72.88%), Query Frame = 1


Query: 13  MVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDG-QTAGLRSILGDES-IIEKCSVRK 72
           M  R++KAL KL A +R C + R  SRR+ SFDSD  Q  G+R +L D+S I E   VRK
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 73  LERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 129
           LER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +YE RSP
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 62/123 (50.41%), Postives = 72/123 (58.54%), Query Frame = 1


Query: 13  MVLRMKKALTKLTAFVRFCHVCRPPS-RRMRSFDSDGQTAGLRSILGDESIIEKCSVRKL 72
           M LR+++ L KL AF+R C + R  S  R R+   D QTA                 R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 73  ERGESSRNGSCE---DDVDQRAQIFIDNFRRQLMLERQISLKLRYYGI--NSSEIDYEAR 130
           ER  SSR  SCE   DDVD RA+IFI+NFRRQL LERQISL+LR YG+  NS E DYE  
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 106

[Close]

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa])

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 52  GLRSILGD-ESIIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLK 111
           GL  ++ D ES  +   VR LER  S    S +DDVD+RA+IFI NFRRQL++ERQ+SL+
Sbjct: 122 GLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQVSLQ 181

Query: 112 LRYYGINSSEIDY 124
           LRYY  NS   DY
Sbjct: 182 LRYYRGNSFGRDY 194

[Close]

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: gi|255548568|ref|XP_002515340.1| (PREDICTED: uncharacterized protein LOC8265180 [Ricinus communis])

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 1


Query: 4   GKMAENATPMVLRMKKALTKLTAFVRFC-----------HVCRPPSRRMRSFDSDGQTAG 63
           G+  +    ++  +KKA+ KL   +RF            +V + P  R++SF+      G
Sbjct: 2   GRQRQQNWTVLGHLKKAVKKLNFLLRFNLRGWRIASIVRNVSKRPQLRLKSFND---RLG 61

Query: 64  LRSILGDESIIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLR 123
           L   + D        V+ L+R   +R+ + ++D+DQRA+IFI NFRRQL+LERQ+SL++R
Sbjct: 62  LHGCIEDLESDRSEMVKTLQR---TRSYASDEDIDQRAEIFIANFRRQLLLERQVSLQVR 121

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g10030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g10030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	6.0e-29	60.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	1.3e-15	50.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
B9ILG0_POPTR	1.4e-09	54.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2	[more]
B9RNM1_RICCO	2.4e-09	35.88	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0918640 PE=4 SV=1	[more]
A0A0D2SRH1_GOSRA	2.9e-07	41.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G122600 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g10030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	4.8e-06	48.08	unknown protein	[more]

BLAST of Cp4.1LG14g10030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	8.6e-29	60.80	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	2.3e-26	61.02	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	1.8e-15	50.41	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|566214045\|ref\|XP_002324391.2\|	2.0e-09	54.79	hypothetical protein POPTR_0018s03620g [Populus trichocarpa]	[more]
gi\|255548568\|ref\|XP_002515340.1\|	3.4e-09	35.88	PREDICTED: uncharacterized protein LOC8265180 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010200	response to chitin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g10030.1	Cp4.1LG14g10030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 83..113 score: 9.
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 59..123 score: 3.7
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 59..123 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g10030	Cucsa.322390	Cucumber (Gy14) v1	cgycpeB0845
Cp4.1LG14g10030	CmaCh16G012210	Cucurbita maxima (Rimu)	cmacpeB345
Cp4.1LG14g10030	CmaCh06G005990	Cucurbita maxima (Rimu)	cmacpeB817
Cp4.1LG14g10030	CmoCh06G006050	Cucurbita moschata (Rifu)	cmocpeB771
Cp4.1LG14g10030	CmoCh16G012640	Cucurbita moschata (Rifu)	cmocpeB308
Cp4.1LG14g10030	Cla008868	Watermelon (97103) v1	cpewmB202
Cp4.1LG14g10030	Csa3G004520	Cucumber (Chinese Long) v2	cpecuB212
Cp4.1LG14g10030	MELO3C013791	Melon (DHL92) v3.5.1	cpemeB184
Cp4.1LG14g10030	ClCG10G000980	Watermelon (Charleston Gray)	cpewcgB193
Cp4.1LG14g10030	CSPI03G00980	Wild cucumber (PI 183967)	cpecpiB215
Cp4.1LG14g10030	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	cpelsiB183
Cp4.1LG14g10030	MELO3C013791.2	Melon (DHL92) v3.6.1	cpemedB231
Cp4.1LG14g10030	CsaV3_3G001020	Cucumber (Chinese Long) v3	cpecucB0255
Cp4.1LG14g10030	BhiUN179G5	Wax gourd	cpewgoB0308
Cp4.1LG14g10030	CsGy3G000920	Cucumber (Gy14) v2	cgybcpeB325
Cp4.1LG14g10030	Carg16285	Silver-seed gourd	carcpeB0955
Cp4.1LG14g10030	Carg19493	Silver-seed gourd	carcpeB0601

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g10030	Cp4.1LG08g09000	Cucurbita pepo (Zucchini)	cpecpeB249

The following block(s) are covering this gene:

None