Carg16285 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16285
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF761 domain protein
Location	Cucurbita_argyrosperma_scaffold_077 : 520476 .. 520865 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGCAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

mRNA sequence

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGCAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

Coding sequence (CDS)

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGCAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

Protein sequence

MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEEKSPPYPSIR

Homology

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BLAST of Carg16285 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 3.9e-27
Identity = 77/118 (65.25%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLR----LCVARRQNSRRLRSFGSDDRTAGLXXXXXXXX 60
           MA+KKSPL+ RLKK+  K+TA LR    LC+ARR+ S RLRSF   DRT GL        
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  XVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSS 115
             EN S+R+LERASS  Y N EDDVDKRSQIFID FLR+LRLERQISLQLRY R+NSS
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSS 118

[Close]

BLAST of Carg16285 vs. NCBI nr
Match: KGN55687.1 (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 73/125 (58.40%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGS-DDRTAGLXXXXXXXXXV- 60
           MA+KKSP+  RL+K+ +KL A LRLC+  RQ SRRL SF S DD+  G+         + 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETES 120
           E+  VRKLERASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE 
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EEKSP 124
           E++SP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Carg16285 vs. NCBI nr
Match: XP_011652707.1 (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 11  RLKKSAIKLTAFLRLCVARRQNSRRLRSFGS-DDRTAGLXXXXXXXXXV-ENRSVRKLER 70
           RL+K+ +KL A LRLC+  RQ SRRL SF S DD+  G+         + E+  VRKLER
Sbjct: 4   RLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLER 63

Query: 71  ASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEEKSP 124
           ASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE E++SP
Sbjct: 64  ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Carg16285 vs. NCBI nr
Match: KGN55686.1 (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 8   LLFRLKKSAIKLTAFLRLC-VARRQNSRRLRSFGSDDRTAGLXXXXXXXXXVENRSVRKL 67
           +  RL+++  KL AFLRLC + RR++  R R+   DD+TA                 R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 68  ERASSASYVN---FEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESE 120
           ER SS+ Y +   FEDDVD R++IFI+ F RQLRLERQISLQLR   VN++  E++
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETD 99

[Close]

BLAST of Carg16285 vs. NCBI nr
Match: OMO90617.1 (hypothetical protein COLO4_19032 [Corchorus olitorius])

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRL--------CVARRQNSRRLRSFGSDDRTAGLXXXX 60
           M ++   +L R KK+  KL + L L        C  RR + R   +   +DR  GL    
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDR-LGLHSFL 60

Query: 61  XXXXXVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVN 118
                    SVR L+R    SY   +DDVDKR++IFI  F RQL LERQ+SL+LRYCR  
Sbjct: 61  EDEETNGRSSVRALQRV--RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTT 120

[Close]

BLAST of Carg16285 vs. TAIR10
Match: AT5G57510.1 (unknown protein)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 18/36 (50.00%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 78  EDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNS 114
           ++D+D ++++FI  F RQL++ERQISL+L+YC+ N+
Sbjct: 87  DEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNN 122

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BLAST of Carg16285 vs. TrEMBL
Match: tr|A0A0A0L4Z8|A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 73/125 (58.40%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGS-DDRTAGLXXXXXXXXXV- 60
           MA+KKSP+  RL+K+ +KL A LRLC+  RQ SRRL SF S DD+  G+         + 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETES 120
           E+  VRKLERASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE 
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EEKSP 124
           E++SP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Carg16285 vs. TrEMBL
Match: tr|A0A0A0L6A3|A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 8   LLFRLKKSAIKLTAFLRLC-VARRQNSRRLRSFGSDDRTAGLXXXXXXXXXVENRSVRKL 67
           +  RL+++  KL AFLRLC + RR++  R R+   DD+TA                 R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 68  ERASSASYVN---FEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESE 120
           ER SS+ Y +   FEDDVD R++IFI+ F RQLRLERQISLQLR   VN++  E++
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETD 99

[Close]

BLAST of Carg16285 vs. TrEMBL
Match: tr|A0A1R3J730|A0A1R3J730_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRL--------CVARRQNSRRLRSFGSDDRTAGLXXXX 60
           M ++   +L R KK+  KL + L L        C  RR + R   +   +DR  GL    
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDR-LGLHSFL 60

Query: 61  XXXXXVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVN 118
                    SVR L+R    SY   +DDVDKR++IFI  F RQL LERQ+SL+LRYCR  
Sbjct: 61  EDEETNGRSSVRALQRV--RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTT 120

[Close]

BLAST of Carg16285 vs. TrEMBL
Match: tr|A0A1R3IU67|A0A1R3IU67_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.6e-08
Identity = 49/125 (39.20%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRL--------CVARRQNSRRLRSFGSDDRTAGLXXXX 60
           M ++   +L R KK+  KL + L L        C  RR + +   +   +DR  GL    
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGKWRPTLSFNDR-LGLHSFL 60

Query: 61  XXXXXVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVN 118
                    SVR L+R    SY   +DDVDKR++IFI  F RQL LERQ+SL+LRYCR  
Sbjct: 61  EDEETNGTSSVRALQRV--RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTR 120

[Close]

BLAST of Carg16285 vs. TrEMBL
Match: tr|A0A2C9UBN9|A0A2C9UBN9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 52/120 (43.33%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFL-------RLCVARRQNSRRLRSFGSDDRTAGLXXXXX 60
           M +K   +L  LK++  KL   L       R+    R  SRR R    +DR  GL     
Sbjct: 1   MGRKNWTVLGHLKRAVKKLNFLLSFNLRRWRVASILRNVSRRRRRLSFNDR-LGLHGCIE 60

Query: 61  XXXXVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNS 114
                EN+ VR L+R  + SY + EDD+D+R++IFI+ F RQL LERQISLQLRY R NS
Sbjct: 61  DVESDENKRVRALQR--TRSYAS-EDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNS 116

The following BLAST results are available for this feature:

BLAST of Carg16285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145292.1	3.9e-27	65.25	uncharacterized protein LOC111014780 [Momordica charantia]	[more]
KGN55687.1	2.8e-25	58.40	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
XP_011652707.1	6.5e-22	58.26	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
KGN55686.1	2.0e-10	45.69	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
OMO90617.1	3.1e-08	40.00	hypothetical protein COLO4_19032 [Corchorus olitorius]	[more]

BLAST of Carg16285 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	2.3e-05	50.00	unknown protein	[more]

BLAST of Carg16285 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16285 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4Z8\|A0A0A0L4Z8_CUCSA	1.9e-25	58.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
tr\|A0A0A0L6A3\|A0A0A0L6A3_CUCSA	1.3e-10	45.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1	[more]
tr\|A0A1R3J730\|A0A1R3J730_9ROSI	2.1e-08	40.00	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1	[more]
tr\|A0A1R3IU67\|A0A1R3IU67_COCAP	4.6e-08	39.20	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 ...	[more]
tr\|A0A2C9UBN9\|A0A2C9UBN9_MANES	1.0e-07	43.33	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16285-RA	Carg16285-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 78..109 e-value: 2.2E-6 score: 27.0
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 4..115
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 4..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16285	Cla008868	Watermelon (97103) v1	carwmB0678
Carg16285	Csa3G004520	Cucumber (Chinese Long) v2	carcuB0701
Carg16285	MELO3C013791	Melon (DHL92) v3.5.1	carmeB0681
Carg16285	ClCG10G000950	Watermelon (Charleston Gray)	carwcgB0655
Carg16285	CSPI03G00980	Wild cucumber (PI 183967)	carcpiB0713
Carg16285	Cucsa.322390	Cucumber (Gy14) v1	carcgyB0759
Carg16285	CmaCh06G005990	Cucurbita maxima (Rimu)	carcmaB0957
Carg16285	CmaCh16G012210	Cucurbita maxima (Rimu)	carcmaB0956
Carg16285	CmoCh06G006050	Cucurbita moschata (Rifu)	carcmoB0933
Carg16285	CmoCh16G012640	Cucurbita moschata (Rifu)	carcmoB0932
Carg16285	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	carlsiB621
Carg16285	Cp4.1LG14g10030	Cucurbita pepo (Zucchini)	carcpeB0955
Carg16285	Cp4.1LG08g09000	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16285	CsGy3G000920	Cucumber (Gy14) v2	carcgybB0677
Carg16285	MELO3C013791.2	Melon (DHL92) v3.6.1	carmedB0693
Carg16285	CsaV3_3G001020	Cucumber (Chinese Long) v3	carcucB0715
Carg16285	Cla97C10G185560	Watermelon (97103) v2	carwmbB0705
Carg16285	BhiUN179G5	Wax gourd	carwgoB0798

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16285	Carg19493	Silver-seed gourd	carcarB442

The following block(s) are covering this gene:

None