CmoCh16G012640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G012640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DUF761 domain protein
Location	Cmo_Chr16 : 9012238 .. 9012630 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCACGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTCGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTAAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

mRNA sequence

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCACGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTCGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTAAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Coding sequence (CDS)

ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCACGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTCGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTAAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Homology

[Close]

BLAST of CmoCh16G012640 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDG-RTAGLRSILGDES-IV 60
           MAE  +P+  R++KAL KL A +RLC + R  SRR+ SFDSD  +  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 120
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EARSP 124
           E RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of CmoCh16G012640 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.6e-15
Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 1


Query: 8   VVLRMKKALTKLTAFVRLCHVFRPPS-RRMRSFDSDGRTAGLRSILGDESIVEKCSVRKL 67
           + LR+++ L KL AF+RLC + R  S  R R+   D +TA                 R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 68  ERGESSRNGSCE---DDVDQRAQIFIDNFRRQLMLERQISLKLRYYGI--NSSEIDYEAR 125
           ER  SSR  SCE   DDVD RA+IFI+NFRRQL LERQISL+LR YG+  NS E DYE  
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 106

[Close]

BLAST of CmoCh16G012640 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 47  GLRSILGD-ESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLK 106
           GL  ++ D ES  +   VR LER  S    S +DDVD+RA+IFI NFRRQL++ERQ+SL+
Sbjct: 122 GLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQVSLQ 181

Query: 107 LRYYGINSSEIDY 119
           LRYY  NS   DY
Sbjct: 182 LRYYRGNSFGRDY 194

[Close]

BLAST of CmoCh16G012640 vs. TrEMBL
Match: B9RNM1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0918640 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1


Query: 8   VVLRMKKALTKLTAFVR-----------LCHVFRPPSRRMRSFDSDGRTAGLRSILGDES 67
           V+  +KKA+ KL   +R           + +V + P  R++SF+      GL   + D  
Sbjct: 11  VLGHLKKAVKKLNFLLRFNLRGWRIASIVRNVSKRPQLRLKSFND---RLGLHGCIEDLE 70

Query: 68  IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEI 119
                 V+ L+R   +R+ + ++D+DQRA+IFI NFRRQL+LERQ+SL++RYY  NS   
Sbjct: 71  SDRSEMVKTLQR---TRSYASDEDIDQRAEIFIANFRRQLLLERQVSLQVRYYRGNSFTR 126

[Close]

BLAST of CmoCh16G012640 vs. TrEMBL
Match: A0A067KMD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07021 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1


Query: 1   MAENATPVVLRMKKALTKLTAFV-------RLCHVFRPPSRRMRSFDSDGRTAGLRSILG 60
           M +    VV  +K+A+ KL   +       RL  +    S+  R    + R  GL   + 
Sbjct: 1   MGKKNWTVVGHLKRAVKKLNFLLSFNLRQWRLASILHNASKSRRRLSFNDRL-GLHGCIE 60

Query: 61  DESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINS 114
           D    +  SVR L++   +R+ + ++D+DQRA+IFI NFRRQL+LERQ+SL++RY   NS
Sbjct: 61  DVESDQNKSVRALQK---TRSYASQEDIDQRAEIFISNFRRQLLLERQVSLQIRYNRGNS 116

[Close]

BLAST of CmoCh16G012640 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 72  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 124
           S + S ++D+D +A++FI NF RQL +ERQISL+L+Y   N+   +Y  RSP
Sbjct: 81  SYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

[Close]

BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDG-RTAGLRSILGDES-IV 60
           MAE  +P+  R++KAL KL A +RLC + R  SRR+ SFDSD  +  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 120
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EARSP 124
           E RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 11  RMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDG-RTAGLRSILGDES-IVEKCSVRKLER 70
           R++KAL KL A +RLC + R  SRR+ SFDSD  +  G+R +L D+S I E   VRKLER
Sbjct: 4   RLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLER 63

Query: 71  GESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 124
             SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +YE RSP
Sbjct: 64  ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-15
Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 1


Query: 8   VVLRMKKALTKLTAFVRLCHVFRPPS-RRMRSFDSDGRTAGLRSILGDESIVEKCSVRKL 67
           + LR+++ L KL AF+RLC + R  S  R R+   D +TA                 R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 68  ERGESSRNGSCE---DDVDQRAQIFIDNFRRQLMLERQISLKLRYYGI--NSSEIDYEAR 125
           ER  SSR  SCE   DDVD RA+IFI+NFRRQL LERQISL+LR YG+  NS E DYE  
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 106

[Close]

BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 47  GLRSILGD-ESIVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLK 106
           GL  ++ D ES  +   VR LER  S    S +DDVD+RA+IFI NFRRQL++ERQ+SL+
Sbjct: 122 GLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITNFRRQLLMERQVSLQ 181

Query: 107 LRYYGINSSEIDY 119
           LRYY  NS   DY
Sbjct: 182 LRYYRGNSFGRDY 194

[Close]

BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|255548568|ref|XP_002515340.1| (PREDICTED: uncharacterized protein LOC8265180 [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1


Query: 8   VVLRMKKALTKLTAFVR-----------LCHVFRPPSRRMRSFDSDGRTAGLRSILGDES 67
           V+  +KKA+ KL   +R           + +V + P  R++SF+      GL   + D  
Sbjct: 11  VLGHLKKAVKKLNFLLRFNLRGWRIASIVRNVSKRPQLRLKSFND---RLGLHGCIEDLE 70

Query: 68  IVEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEI 119
                 V+ L+R   +R+ + ++D+DQRA+IFI NFRRQL+LERQ+SL++RYY  NS   
Sbjct: 71  SDRSEMVKTLQR---TRSYASDEDIDQRAEIFIANFRRQLLLERQVSLQVRYYRGNSFTR 126

The following BLAST results are available for this feature:

BLAST of CmoCh16G012640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G012640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	2.2e-28	60.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	3.6e-15	49.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
B9ILG0_POPTR	1.3e-09	54.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2	[more]
B9RNM1_RICCO	1.9e-08	37.70	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0918640 PE=4 SV=1	[more]
A0A067KMD1_JATCU	1.6e-07	36.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07021 PE=4 SV=1	[more]

BLAST of CmoCh16G012640 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57510.1	4.7e-06	48.08	unknown protein	[more]

BLAST of CmoCh16G012640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	3.1e-28	60.00	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	5.0e-26	61.74	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	5.2e-15	49.59	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|566214045\|ref\|XP_002324391.2\|	1.9e-09	54.79	hypothetical protein POPTR_0018s03620g [Populus trichocarpa]	[more]
gi\|255548568\|ref\|XP_002515340.1\|	2.8e-08	37.70	PREDICTED: uncharacterized protein LOC8265180 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010200	response to chitin
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012640.1	CmoCh16G012640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 78..108 score: 8.
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 54..118 score: 1.7
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 54..118 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G012640	Cucsa.322390	Cucumber (Gy14) v1	cgycmoB0885
CmoCh16G012640	CmaCh16G012210	Cucurbita maxima (Rimu)	cmacmoB323
CmoCh16G012640	CmaCh06G005990	Cucurbita maxima (Rimu)	cmacmoB807
CmoCh16G012640	Cla008868	Watermelon (97103) v1	cmowmB285
CmoCh16G012640	Csa3G004520	Cucumber (Chinese Long) v2	cmocuB316
CmoCh16G012640	MELO3C013791	Melon (DHL92) v3.5.1	cmomeB284
CmoCh16G012640	ClCG10G000980	Watermelon (Charleston Gray)	cmowcgB276
CmoCh16G012640	CSPI03G00980	Wild cucumber (PI 183967)	cmocpiB323
CmoCh16G012640	Lsi07G011260	Bottle gourd (USVL1VR-Ls)	cmolsiB313
CmoCh16G012640	Cp4.1LG14g10030	Cucurbita pepo (Zucchini)	cmocpeB308
CmoCh16G012640	Cp4.1LG08g09000	Cucurbita pepo (Zucchini)	cmocpeB327
CmoCh16G012640	MELO3C013791.2	Melon (DHL92) v3.6.1	cmomedB329
CmoCh16G012640	CsaV3_3G001020	Cucumber (Chinese Long) v3	cmocucB0377
CmoCh16G012640	Cla97C10G185560	Watermelon (97103) v2	cmowmbB320
CmoCh16G012640	BhiUN179G5	Wax gourd	cmowgoB0447
CmoCh16G012640	CsGy3G000920	Cucumber (Gy14) v2	cgybcmoB310
CmoCh16G012640	Carg16285	Silver-seed gourd	carcmoB0932
CmoCh16G012640	Carg19493	Silver-seed gourd	carcmoB0581

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G012640	CmoCh06G006050	Cucurbita moschata (Rifu)	cmocmoB293

The following block(s) are covering this gene:

None