CsaV3_3G021660 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCATATTGTTCCCACCACTCTTATAATATATATATATATAGAAACTCCAAAGAGATCGAGAAACACAAAGAGCGAAAGAAAAAGATGGGAAATGCAATAGGGAGAGGATCAAGAAGAAAAAAGAGAACAACAAAAGTCATGAAAATCAATGGAGAAACCATCAAAATAACACTTCCAACCACAGCATACGAAGTCACAAGCCATTATCCAAGTCACCTTCTTTATGAATCCAAATCCCTCAAACTGTTTGGCCTCCGAGCAAAGCCTTTGGACCCTCACTGTCACCTCGAACCTAAAACCCTTTACTTCCTCCTCCAATTGCCAACACTCCCTCGCGACCATTGTTCGCTTCGTCGCACTTGTTCCGACCTTCATAATTTGTCTGCATCTGACCGCCTTGAGTGCCTTTTGCTCTCTCGTCGTTCGCTTTCCGACCTCCAAACTCTTCGATTCGATCCTCAGAGGTCATCAACCGACGATGGTGCTGCTAAGCCTGTGCAGGTCAAATTTCAATTGCCGAGGGCAGAATTCGAGAGATTGATGAAGGAGTGTAAGAACAAGGTGGAGGTCACAAAGAGGATTGTTGATTATTGTGCAAGAAGTAGAGATAATGTCTATGGCAACCAAGATGATGAGTTATTTTGGAAGATGGGTGGAGCATATAGCG ATGGGAAATGCAATAGGGAGAGGATCAAGAAGAAAAAAGAGAACAACAAAAGTCATGAAAATCAATGGAGAAACCATCAAAATAACACTTCCAACCACAGCATACGAAGTCACAAGCCATTATCCAAGTCACCTTCTTTATGAATCCAAATCCCTCAAACTGTTTGGCCTCCGAGCAAAGCCTTTGGACCCTCACTGTCACCTCGAACCTAAAACCCTTTACTTCCTCCTCCAATTGCCAACACTCCCTCGCGACCATTGTTCGCTTCGTCGCACTTGTTCCGACCTTCATAATTTGTCTGCATCTGACCGCCTTGAGTGCCTTTTGCTCTCTCGTCGTTCGCTTTCCGACCTCCAAACTCTTCGATTCGATCCTCAGAGGTCATCAACCGACGATGGTGCTGCTAAGCCTGTGCAGGTCAAATTTCAATTGCCGAGGGCAGAATTCGAGAGATTGATGAAGGAGTGTAAGAACAAGGTGGAGGTCACAAAGAGGATTGTTGATTATTGTGCAAGAAGTAGAGATAATGTCTATGGCAACCAAGATGATGAGTTATTTTGGAAGATGGGTGGAGCATATAGCG ATGGGAAATGCAATAGGGAGAGGATCAAGAAGAAAAAAGAGAACAACAAAAGTCATGAAAATCAATGGAGAAACCATCAAAATAACACTTCCAACCACAGCATACGAAGTCACAAGCCATTATCCAAGTCACCTTCTTTATGAATCCAAATCCCTCAAACTGTTTGGCCTCCGAGCAAAGCCTTTGGACCCTCACTGTCACCTCGAACCTAAAACCCTTTACTTCCTCCTCCAATTGCCAACACTCCCTCGCGACCATTGTTCGCTTCGTCGCACTTGTTCCGACCTTCATAATTTGTCTGCATCTGACCGCCTTGAGTGCCTTTTGCTCTCTCGTCGTTCGCTTTCCGACCTCCAAACTCTTCGATTCGATCCTCAGAGGTCATCAACCGACGATGGTGCTGCTAAGCCTGTGCAGGTCAAATTTCAATTGCCGAGGGCAGAATTCGAGAGATTGATGAAGGAGTGTAAGAACAAGGTGGAGGTCACAAAGAGGATTGTTGATTATTGTGCAAGAAGTAGAGATAATGTCTATGGCAACCAAGATGATGAGTTATTTTGGAAGATGGGTGGAGCATATAGCG MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGNQDDELFWKMGGAYSX
BLAST of CsaV3_3G021660 vs. NCBI nr
Match: KGN57888.1 (hypothetical protein Csa_3G368690 [Cucumis sativus]) HSP 1 Score: 393.3 bits (1009), Expect = 4.9e-106 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. NCBI nr
Match: XP_004151549.1 (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]) HSP 1 Score: 360.5 bits (924), Expect = 3.5e-96 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. NCBI nr
Match: XP_008457131.1 (PREDICTED: uncharacterized protein At1g66480 [Cucumis melo]) HSP 1 Score: 273.9 bits (699), Expect = 4.3e-70 Identity = 141/161 (87.58%), Postives = 145/161 (90.06%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. NCBI nr
Match: XP_022998216.1 (uncharacterized protein At1g66480-like [Cucurbita maxima]) HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52 Identity = 113/168 (67.26%), Postives = 131/168 (77.98%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. NCBI nr
Match: XP_023524596.1 (uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 213.4 bits (542), Expect = 6.9e-52 Identity = 113/168 (67.26%), Postives = 130/168 (77.38%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TAIR10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection.) HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26 Identity = 73/167 (43.71%), Postives = 105/167 (62.87%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TAIR10
Match: AT1G66480.1 (plastid movement impaired 2) HSP 1 Score: 109.4 bits (272), Expect = 2.6e-24 Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TAIR10
Match: AT1G71015.1 (unknown protein) HSP 1 Score: 109.0 bits (271), Expect = 3.3e-24 Identity = 64/170 (37.65%), Postives = 104/170 (61.18%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TAIR10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1)) HSP 1 Score: 105.5 bits (262), Expect = 3.7e-23 Identity = 64/185 (34.59%), Postives = 105/185 (56.76%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. Swiss-Prot
Match: sp|Q6NLC8|Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 4.6e-23 Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TrEMBL
Match: tr|A0A0A0L7W0|A0A0A0L7W0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 3.2e-106 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TrEMBL
Match: tr|A0A1S3C4W5|A0A1S3C4W5_CUCME (uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 2.9e-70 Identity = 141/161 (87.58%), Postives = 145/161 (90.06%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TrEMBL
Match: tr|A0A061E984|A0A061E984_THECC (Encodes a protein whose expression is responsive to nematode infection, putative OS=Theobroma cacao OX=3641 GN=TCM_047008 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33 Identity = 87/179 (48.60%), Postives = 117/179 (65.36%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TrEMBL
Match: tr|A0A1R3GR43|A0A1R3GR43_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24037 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 3.1e-32 Identity = 92/201 (45.77%), Postives = 123/201 (61.19%), Query Frame = 0
BLAST of CsaV3_3G021660 vs. TrEMBL
Match: tr|A0A2P4J882|A0A2P4J882_QUESU (Isoform 2 of uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_34240 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 9.0e-32 Identity = 87/202 (43.07%), Postives = 126/202 (62.38%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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