CmaCh01G003550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Plastid movement impaired 2
Location	Cma_Chr01 : 1759444 .. 1761147 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGCTATGGGGAGAGGATCAAGAAGAAGCAAGAGAACAGCAAAAGTGATGAAAATCAATGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACGACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCAACCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAACTCAAACCTAAGACCCTCTACTTCCTCCTCCACTTGCCCCCTCTCCCCGGCAGCCATCGCCCGTTGTCGCGTGTGCGCTCCGACCTTTGCTCGTCTGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCGCTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTCTCGCCCTACTGGACCCGTGCAGATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTTGATTTGTGGAAAACGGGTGGCATGTGTAGTGGTCAAGCACGTGAGGTGCGTTCTCTAGCCGTTCTATTTCAATAGTCGATGATAAAATTCTAATATCTTTTTGAATTTATGTTTTAGTGTAGTGGTCAAGCTTATAAAAGTGGGTTTGGTTTAAGAAATCTTTTAAACTAGCTCAAAATTTTGAGCTAGTTAGGTTGATGACCGGAACAACTCTAATAGAATTCACAAATTAATCCTCGATTTTTGGGTTTTCTTTTTTTTAATTATTTAAAAATATTTTACTTAACCATCGTACATGTTAAGTAATCTGGGTTGGTCGACCAGAAAATATTTTGAGCTAGTTAGGTTGATGACTCGAACCGAGTGTAATATTTCAGCTCCAAAAATTGAACCCACAACCTTTATGATAGGTAATCTGGATTGATCATATTCTCGGATCATTTAAACACCCCTAAAGATTCATATTCTTTCGGCTCGTACTGTTCCAAAAAAAAATCCATTAAAAAAATAATAATACAAGGAAAAGAAAAAAAGTTTGAGTTGTAATTTTTTTTTTTTTTTTTGGTAGTTTAAGGTACTTTTTATATATTAATTAAATTTCAAAACAATAGTTAATTTATTTTCTTATAGATTACATTAATTTAAAAATATTTTATAAAGCATGCGTATATATTTATAAATAAAAGATTAAAGTAAATAAAAAATAATTTAAATAAATAAAAAAAAGAGTCTGGTGGGTATGAGTTTATATTTGACTAACAAAATAAATATATATTTGTTGACTTTGATTTAAAAAAAAAAAACTTAATAAAGGGGTTTTAGTAAATAATAAATATAATTGAAAAAAAAAAGTCAAAAGTTAATAAAGAACACAAAAATCTATAGTGCTTAGTTGAGGACACATCTTTTACAATTTAAAATATTTATTATTATTATTATTATTATTATATATTAATAAATAGCATTTGTAAATTTATTTTTAAAAAATAAAATAATTAATCCTTTTGAAATATAAACTAATAATTGTTTTAACTCTAAATATTTGCAGAAAAGAGTGAGCTTCGTTAAACGATGAAGAGGATGGTTCTGCACAATGGCAATGCATTGAGCTTTCATTTTGGCTCTCTCTCTCTAATGTATAGAATGATAAATCACCTTAAGTTCGTGTGCCCTCGTTCTAGGAATTGATTGATATGAATAGAATAC

mRNA sequence

ATGGGAAATGCTATGGGGAGAGGATCAAGAAGAAGCAAGAGAACAGCAAAAGTGATGAAAATCAATGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACGACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCAACCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAACTCAAACCTAAGACCCTCTACTTCCTCCTCCACTTGCCCCCTCTCCCCGGCAGCCATCGCCCGTTGTCGCGTGTGCGCTCCGACCTTTGCTCGTCTGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCGCTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTCTCGCCCTACTGGACCCGTGCAGATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTTGATTTGTGGAAAACGGGTGGCATGTGTAGTGGTCAAGCACGTGAGAAAAGAGTGAGCTTCGTTAAACGATGAAGAGGATGGTTCTGCACAATGGCAATGCATTGAGCTTTCATTTTGGCTCTCTCTCTCTAATGTATAGAATGATAAATCACCTTAAGTTCGTGTGCCCTCGTTCTAGGAATTGATTGATATGAATAGAATAC

Coding sequence (CDS)

ATGGGAAATGCTATGGGGAGAGGATCAAGAAGAAGCAAGAGAACAGCAAAAGTGATGAAAATCAATGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACGACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCAACCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAACTCAAACCTAAGACCCTCTACTTCCTCCTCCACTTGCCCCCTCTCCCCGGCAGCCATCGCCCGTTGTCGCGTGTGCGCTCCGACCTTTGCTCGTCTGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCGCTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTCTCGCCCTACTGGACCCGTGCAGATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTTGATTTGTGGAAAACGGGTGGCATGTGTAGTGGTCAAGCACGTGAGAAAAGAGTGAGCTTCGTTAAACGATGA

Protein sequence

MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAKPLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSFRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAREKRVSFVKR

Homology

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BLAST of CmaCh01G003550 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.8e-28
Identity = 83/209 (39.71%), Postives = 121/209 (57.89%), Query Frame = 1


Query: 5   MGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSLSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR++SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEA-AERIVDLW----- 184
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A AE+I+ ++     
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSG 180

Query: 185 KTGGMCSG------------QAREKRVSF 187
           + GG   G            +AREK+VSF
Sbjct: 181 ELGGGRGGVDGRRELGSGEIKAREKQVSF 208

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BLAST of CmaCh01G003550 vs. TrEMBL
Match: A0A0A0L7W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G368690 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.5e-54
Identity = 120/197 (60.91%), Postives = 139/197 (70.56%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGNA+GRGSRR KRT KVMKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSLSDLQS 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRSLSDLQ+
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVD------------ 180
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

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BLAST of CmaCh01G003550 vs. TrEMBL
Match: A0A059BSU6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.3e-37
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSLSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

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BLAST of CmaCh01G003550 vs. TrEMBL
Match: A0A059BT95_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.3e-37
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSLSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

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BLAST of CmaCh01G003550 vs. TrEMBL
Match: A0A067JIK5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02495 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 93/205 (45.37%), Postives = 128/205 (62.44%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN++GRG +     AK+MK++GETFK++TP  A  V   +P H+L DS ++   G+RAK
Sbjct: 1   MGNSIGRGKK-----AKIMKVDGETFKLKTPAKAMDVVKDYPGHVLLDSDAVKHFGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLS---RVRSDLCSSASDRLECLMLSRRSLSDL 120
           PL+P  +L PK +YFL+ LP LP    P+S   RVRS +  SA DRLE LMLSRRS+SDL
Sbjct: 61  PLEPEMELNPKKIYFLVELPKLPEEKEPISITRRVRSGIHLSAKDRLEFLMLSRRSVSDL 120

Query: 121 QSFRLDPDGM-STASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDL-------- 180
              R  P  +       +GPV++K+R+P+ + E+L++ESK +VE AE+IVDL        
Sbjct: 121 SIVRPLPSQIPDDGHNGSGPVRVKMRLPKAQMEKLVEESKDEVEVAEKIVDLFMENSGDR 180

Query: 181 ----WKTGGMCSGQ---AREKRVSF 187
               WK      G+    REKRV+F
Sbjct: 181 NRRQWKPELGSIGENLKPREKRVNF 200

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BLAST of CmaCh01G003550 vs. TrEMBL
Match: B9HJA1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 94/209 (44.98%), Postives = 125/209 (59.81%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN +G      K+TAKVMKINGETFK +TP  A  V   +P H+L +S+++   G+RAK
Sbjct: 1   MGNTLG-----GKKTAKVMKINGETFKFKTPVKAGDVVKDYPGHVLLESEAVKHYGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PL+ H  L PK LYFL+ LP  P    P  RVRS +  SA DRLE LMLSRRS SDL   
Sbjct: 61  PLEAHQDLVPKRLYFLVELPETPTERVP-RRVRSGINMSAKDRLESLMLSRRSTSDLSIM 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDL------------ 180
           +  P  + +     G +++K+R+P+E+ E+LM+ESK + EAA +I+DL            
Sbjct: 121 K--PSSIVSEEAKRGAMRVKMRLPKEQVEKLMQESKDEAEAAAKILDLCMANTAGESGLS 180

Query: 181 ----WKTGG------MCSGQAREKRVSFV 188
               WK+GG          +AREKRVSF+
Sbjct: 181 QQVHWKSGGHGRVGNQGIIKAREKRVSFL 201

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BLAST of CmaCh01G003550 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 125.6 bits (314), Expect = 3.3e-29
Identity = 74/169 (43.79%), Postives = 105/169 (62.13%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN++G      K+T KVMKI+GETFK++TP TA +V    P H+L DS+S+   G RAK
Sbjct: 1   MGNSLG-----GKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PL+   +L+ K LYF++     P    P  RVRS +  SA +RLE LML+RRS SDL S 
Sbjct: 61  PLEAKQRLEAKRLYFVVE----PVKECPPRRVRSGIHVSAKERLESLMLARRSSSDL-SI 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
              P G +T        ++K+R+P+ E E+L+KE  ++ EA ++I  L+
Sbjct: 121 LKPPGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALF 159

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BLAST of CmaCh01G003550 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-29
Identity = 83/209 (39.71%), Postives = 121/209 (57.89%), Query Frame = 1


Query: 5   MGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSLSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR++SD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEA-AERIVDLW----- 184
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A AE+I+ ++     
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSG 180

Query: 185 KTGGMCSG------------QAREKRVSF 187
           + GG   G            +AREK+VSF
Sbjct: 181 ELGGGRGGVDGRRELGSGEIKAREKQVSF 208

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BLAST of CmaCh01G003550 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-26
Identity = 77/203 (37.93%), Postives = 118/203 (58.13%), Query Frame = 1


Query: 10  RRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAKPLDPHHQLK 69
           RR+K   KVMKI+G+ F+++TP TA   T  +P  +L DS+++ +LG+RAKPL+P+  LK
Sbjct: 8   RRNK--VKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEPNQILK 67

Query: 70  PKTLYFLLHLPPLPGSHR-PLSRVRS-DLCSSASDRLECLMLSRRSLSDLQSFRLDPDGM 129
           P   YFL+ LPP+   ++ P  RV S ++   A +RLE LMLSRR++SD+ + R D  G 
Sbjct: 68  PNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARSDVVG- 127

Query: 130 STASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW--KTGGMCSG-------- 189
                  G  +++LR+PR +  +LM+ES    E A +I+  +   +GG+  G        
Sbjct: 128 --DGPELGHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYMESSGGIQGGRDNDGLRQ 187

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BLAST of CmaCh01G003550 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 68/168 (40.48%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN++G     +K+TA +M INGE+FK++TP  A  V    P H+L +S+++ +LG+RAK
Sbjct: 1   MGNSLG-----TKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120
           PL+PH  L+ K +YF++ LP       P  RVRS +  SA +RLE L LSRRS SDL   
Sbjct: 61  PLEPHQNLESKRIYFMVELPRTWKERTP-RRVRSGIQMSAKERLENLKLSRRSSSDLSVM 120

Query: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDL 169
           +   + ++   R      +KL++P+ + E+L KES+S  + + +I  L
Sbjct: 121 KKKTE-VNDEEREVS--SVKLKLPKWKIEKLRKESESGSDFSNKITQL 159

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BLAST of CmaCh01G003550 vs. NCBI nr
Match: gi|700202755|gb|KGN57888.1| (hypothetical protein Csa_3G368690 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 120/197 (60.91%), Postives = 139/197 (70.56%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGNA+GRGSRR KRT KVMKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSLSDLQS 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRSLSDLQ+
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVD------------ 180
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

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BLAST of CmaCh01G003550 vs. NCBI nr
Match: gi|449467677|ref|XP_004151549.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 105/179 (58.66%), Postives = 123/179 (68.72%), Query Frame = 1


Query: 19  MKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAKPLDPH  L+PKTLYFLL 
Sbjct: 1   MKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSLSDLQSFRLDPDGMSTASRPTGPV 138
           LP LP  H  L R  SDL + SASDRLECL+LSRRSLSDLQ+ R DP   ST      PV
Sbjct: 61  LPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPV 120

Query: 139 QIKLRVPREEFERLMKESKSKVEAAERIVD-----------------LWKTGGMCSGQA 180
           Q+K ++PR EFERLMKE K+KVE  +RIVD                  WK GG  SG+A
Sbjct: 121 QVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGNQDDELFWKMGGAYSGKA 179

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BLAST of CmaCh01G003550 vs. NCBI nr
Match: gi|659114591|ref|XP_008457131.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 97/149 (65.10%), Postives = 114/149 (76.51%), Query Frame = 1


Query: 19  MKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGETFKI  PTTA++VT+H+PNHLLY+S+S+NQ GLRAKPLDPH QL+PKTLYFLL 
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSFRLDPDGMSTASRPTGPVQ 138
           LP L G  R L R  SDL  SASDRLECL+LSRRS+SDLQ+ R DP            VQ
Sbjct: 61  LPTLYGVDRSLRRTCSDLHLSASDRLECLLLSRRSVSDLQTLRFDPQRSLIHDGAAKSVQ 120

Query: 139 IKLRVPREEFERLMKESKSKVEAAERIVD 168
           +K ++PR EFERLMKE K+ VE  ++IVD
Sbjct: 121 VKFQLPRAEFERLMKECKNNVEVTKKIVD 149

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BLAST of CmaCh01G003550 vs. NCBI nr
Match: gi|629103864|gb|KCW69333.1| (hypothetical protein EUGRSUZ_F02820 [Eucalyptus grandis])

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSLSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

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BLAST of CmaCh01G003550 vs. NCBI nr
Match: gi|702374332|ref|XP_010062234.1| (PREDICTED: uncharacterized protein At1g66480-like [Eucalyptus grandis])

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSLSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

The following BLAST results are available for this feature:

BLAST of CmaCh01G003550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	7.8e-28	39.71	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of CmaCh01G003550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7W0_CUCSA	7.5e-54	60.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G368690 PE=4 SV=1	[more]
A0A059BSU6_EUCGR	8.3e-37	51.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1	[more]
A0A059BT95_EUCGR	8.3e-37	51.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1	[more]
A0A067JIK5_JATCU	2.0e-35	45.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02495 PE=4 SV=1	[more]
B9HJA1_POPTR	1.3e-34	44.98	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1	[more]

BLAST of CmaCh01G003550 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01340.1	3.3e-29	43.79	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT1G66480.1	4.4e-29	39.71	plastid movement impaired 2	[more]
AT5G37840.1	1.2e-26	37.93	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]
AT1G71015.1	1.3e-25	40.48	unknown protein	[more]

BLAST of CmaCh01G003550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202755\|gb\|KGN57888.1\|	1.1e-53	60.91	hypothetical protein Csa_3G368690 [Cucumis sativus]	[more]
gi\|449467677\|ref\|XP_004151549.1\|	1.4e-45	58.66	PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]	[more]
gi\|659114591\|ref\|XP_008457131.1\|	1.2e-44	65.10	PREDICTED: uncharacterized protein At1g66480-like [Cucumis melo]	[more]
gi\|629103864\|gb\|KCW69333.1\|	1.2e-36	51.18	hypothetical protein EUGRSUZ_F02820 [Eucalyptus grandis]	[more]
gi\|702374332\|ref\|XP_010062234.1\|	1.2e-36	51.18	PREDICTED: uncharacterized protein At1g66480-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009624	response to nematode
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003550.1	CmaCh01G003550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..115 score: 2.6
None	No IPR available	unknown	Coil	Coil	coord: 145..165 scor
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 2..168 score: 6.8
None	No IPR available	PANTHER	PTHR33148:SF6	SUBFAMILY NOT NAMED	coord: 2..168 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G003550	Cucsa.012710	Cucumber (Gy14) v1	cgycmaB0551
CmaCh01G003550	Cla013167	Watermelon (97103) v1	cmawmB434
CmaCh01G003550	ClCG05G010920	Watermelon (Charleston Gray)	cmawcgB407
CmaCh01G003550	CmoCh01G003710	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G003550	Lsi05G003030	Bottle gourd (USVL1VR-Ls)	cmalsiB440
CmaCh01G003550	Cp4.1LG02g16700	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003550	CsaV3_3G021660	Cucumber (Chinese Long) v3	cmacucB0547
CmaCh01G003550	Cla97C05G093220	Watermelon (97103) v2	cmawmbB473
CmaCh01G003550	Bhi01G001346	Wax gourd	cmawgoB0559
CmaCh01G003550	CsGy3G021050	Cucumber (Gy14) v2	cgybcmaB368
CmaCh01G003550	Carg07442	Silver-seed gourd	carcmaB1059

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G003550	Cucurbita maxima (Rimu)	cmacmaB255
CmaCh01G003550	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003550	Melon (DHL92) v3.5.1	cmameB431
CmaCh01G003550	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003550	Melon (DHL92) v3.6.1	cmamedB496
CmaCh01G003550	Silver-seed gourd	carcmaB0241