CsGy3G021050 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G021050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	plastid movement impaired 2
Location	Chr3 : 18902725 .. 18903321 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGCAATAGGGAGAGGATCAAGAAGAAAAAAGAGAACAACAAAAGTCATGAAAATCAATGGAGAAACCATCAAAATAACACTTCCAACCACAGCATACGAAGTCACAAGCCATTATCCAAGTCACCTTCTTTATGAATCCAAATCCCTAAAACTGTTTGGCCTCCGAGCAAAGCCTTTGGACCCTCACTGTCACCTCGAACCTAAAACCCTTTACTTCCTCCTCCAATTGCCAGCACTCCCTCGCGACCATTGTTCGCTTCGTCGCACTTGTTCCGACCTTCATAATTTGTCTGCATCTGACCGCCTTGAGTGCCTTTTGCTCTCTCGTCGTTCGCTTTCCGACCTCCAAACTCTTCGATTCGATCCTCAGAGGTCATCAACCGACGATGGTGCTGCTAAGCCTGTGCAGGTCAAATTTCAATTGCCGAGGGCAGAATTCGAGAGATTGATGAAGGAGTGTAAGAACAAGGTGGAGGTCACAAAGAGGATTGTTGATTATTGTGCAAGAAGTAGAGATAATGTCTATGGCAACCAAGATGATGAGTTATTTTGGAAGATGGGTGGAGCATATAGCGGTAAAGCGTGCTAG

mRNA sequence

ATGGGAAATGCAATAGGGAGAGGATCAAGAAGAAAAAAGAGAACAACAAAAGTCATGAAAATCAATGGAGAAACCATCAAAATAACACTTCCAACCACAGCATACGAAGTCACAAGCCATTATCCAAGTCACCTTCTTTATGAATCCAAATCCCTAAAACTGTTTGGCCTCCGAGCAAAGCCTTTGGACCCTCACTGTCACCTCGAACCTAAAACCCTTTACTTCCTCCTCCAATTGCCAGCACTCCCTCGCGACCATTGTTCGCTTCGTCGCACTTGTTCCGACCTTCATAATTTGTCTGCATCTGACCGCCTTGAGTGCCTTTTGCTCTCTCGTCGTTCGCTTTCCGACCTCCAAACTCTTCGATTCGATCCTCAGAGGTCATCAACCGACGATGGTGCTGCTAAGCCTGTGCAGGTCAAATTTCAATTGCCGAGGGCAGAATTCGAGAGATTGATGAAGGAGTGTAAGAACAAGGTGGAGGTCACAAAGAGGATTGTTGATTATTGTGCAAGAAGTAGAGATAATGTCTATGGCAACCAAGATGATGAGTTATTTTGGAAGATGGGTGGAGCATATAGCGGTAAAGCGTGCTAG

Coding sequence (CDS)

ATGGGAAATGCAATAGGGAGAGGATCAAGAAGAAAAAAGAGAACAACAAAAGTCATGAAAATCAATGGAGAAACCATCAAAATAACACTTCCAACCACAGCATACGAAGTCACAAGCCATTATCCAAGTCACCTTCTTTATGAATCCAAATCCCTAAAACTGTTTGGCCTCCGAGCAAAGCCTTTGGACCCTCACTGTCACCTCGAACCTAAAACCCTTTACTTCCTCCTCCAATTGCCAGCACTCCCTCGCGACCATTGTTCGCTTCGTCGCACTTGTTCCGACCTTCATAATTTGTCTGCATCTGACCGCCTTGAGTGCCTTTTGCTCTCTCGTCGTTCGCTTTCCGACCTCCAAACTCTTCGATTCGATCCTCAGAGGTCATCAACCGACGATGGTGCTGCTAAGCCTGTGCAGGTCAAATTTCAATTGCCGAGGGCAGAATTCGAGAGATTGATGAAGGAGTGTAAGAACAAGGTGGAGGTCACAAAGAGGATTGTTGATTATTGTGCAAGAAGTAGAGATAATGTCTATGGCAACCAAGATGATGAGTTATTTTGGAAGATGGGTGGAGCATATAGCGGTAAAGCGTGCTAG

Protein sequence

MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGNQDDELFWKMGGAYSGKAC

Homology

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BLAST of CsGy3G021050 vs. NCBI nr
Match: KGN57888.1 (hypothetical protein Csa_3G368690 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 2.4e-108
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PLDPHCHLEPKTLYFLLQLP LPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180
           LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

Query: 181 QDDELFWKMGGAYSGKAC 199
           QDDELFWKMGGAYSGKAC
Sbjct: 181 QDDELFWKMGGAYSGKAC 198

[Close]

BLAST of CsGy3G021050 vs. NCBI nr
Match: XP_004151549.1 (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 1.7e-98
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 19  MKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQ 78
           MKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQ
Sbjct: 1   MKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQ 60

Query: 79  LPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPV 138
           LP LPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPV
Sbjct: 61  LPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPV 120

Query: 139 QVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGNQDDELFWKMGGAYSGKAC 198
           QVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGNQDDELFWKMGGAYSGKAC
Sbjct: 121 QVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGNQDDELFWKMGGAYSGKAC 180

[Close]

BLAST of CsGy3G021050 vs. NCBI nr
Match: XP_008457131.1 (PREDICTED: uncharacterized protein At1g66480 [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 140/161 (86.96%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 19  MKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQ 78
           MKINGET KITLPTTAYEVTSHYP+HLLYESKSL  FGLRAKPLDPHC L PKTLYFLLQ
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPV 138
           LP L     SLRRTCSDLH LSASDRLECLLLSRRS+SDLQTLRFDPQRS   DGAAK V
Sbjct: 61  LPTLYGVDRSLRRTCSDLH-LSASDRLECLLLSRRSVSDLQTLRFDPQRSLIHDGAAKSV 120

Query: 139 QVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYG 180
           QVKFQLPRAEFERLMKECKN VEVTK+IVD+CARSRDNVYG
Sbjct: 121 QVKFQLPRAEFERLMKECKNNVEVTKKIVDFCARSRDNVYG 160

[Close]

BLAST of CsGy3G021050 vs. NCBI nr
Match: XP_022998216.1 (uncharacterized protein At1g66480-like [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 5.8e-54
Identity = 120/197 (60.91%), Postives = 139/197 (70.56%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGNA+GRGSRR KRT KVMKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRSLSDLQ+
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSLSDLQS 120

Query: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVD------------ 179

Query: 181 QDDELFWKMGGAYSGKA 198
                 WK GG  SG+A
Sbjct: 181 -----LWKTGGMCSGQA 179

[Close]

BLAST of CsGy3G021050 vs. NCBI nr
Match: XP_023524596.1 (uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53
Identity = 120/197 (60.91%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGNA+GRGSRR KRT KVMKINGET KI  PTTA +VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRSLSDLQ+
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSLSDLQS 120

Query: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 FRLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVD------------ 179

Query: 181 QDDELFWKMGGAYSGKA 198
                 WK GG  SG+A
Sbjct: 181 -----LWKTGGMCSGQA 179

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BLAST of CsGy3G021050 vs. TAIR10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-26
Identity = 73/167 (43.71%), Postives = 105/167 (62.87%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN++G      K+TTKVMKI+GET K+  P TA EV   +P H+L +S+S+K +G RAK
Sbjct: 1   MGNSLG-----GKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PL+    LE K LYF+++    P   C  RR  S +H +SA +RLE L+L+RRS SDL  
Sbjct: 61  PLEAKQRLEAKRLYFVVE----PVKECPPRRVRSGIH-VSAKERLESLMLARRSSSDLSI 120

Query: 121 LR-FDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRI 167
           L+          +GA +  +VK ++P+AE E+L+KE   + E T++I
Sbjct: 121 LKPXXXXXXXXXEGAVR--RVKVRIPKAELEKLVKEGATEAEATQKI 155

[Close]

BLAST of CsGy3G021050 vs. TAIR10
Match: AT1G71015.1 (unknown protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-24
Identity = 64/170 (37.65%), Postives = 104/170 (61.18%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN++G      K+T  +M INGE+ K+  P  A  V   +P H+L ES+++K  G+RAK
Sbjct: 1   MGNSLG-----TKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PL+PH +LE K +YF+++LP   ++  + RR  S +  +SA +RLE L LSRRS SDL  
Sbjct: 61  PLEPHQNLESKRIYFMVELPRTWKER-TPRRVRSGI-QMSAKERLENLKLSRRSSSDLSV 120

Query: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYC 171
           ++   +++  +D   +   VK +LP+ + E+L KE ++  + + +I   C
Sbjct: 121 MK---KKTEVNDEEREVSSVKLKLPKWKIEKLRKESESGSDFSNKITQLC 160

[Close]

BLAST of CsGy3G021050 vs. TAIR10
Match: AT1G66480.1 (plastid movement impaired 2)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-24
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN+I      K++  KVMKI+GET +I  P TA EVT+ YP ++L +S+++K FG+R+K
Sbjct: 1   MGNSI----TVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSL--------RRTCSDLHNLSASDRLECLLLSR 120
           PL+P+  L+PK  YFL++LP LP +  ++        RR  S +H + A +RL+ L+LSR
Sbjct: 61  PLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIH-VGAKERLDMLMLSR 120

Query: 121 RSLSDLQTLRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKN 159
           R++SD+   R D       +       V+ +LPR++  +LM+E  N
Sbjct: 121 RTVSDVTIGRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNN 161

[Close]

BLAST of CsGy3G021050 vs. TAIR10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-23
Identity = 64/185 (34.59%), Postives = 105/185 (56.76%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN I      ++   KVMKI+G+  ++  P TA + T  YP  +L +S+++K  G+RAK
Sbjct: 1   MGNTI----MVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPAL-PRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQ 120
           PL+P+  L+P   YFL+ LP +  R+    RR  S   ++ A +RLE L+LSRR++SD+ 
Sbjct: 61  PLEPNQILKPNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVG 120

Query: 121 TLRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYG 180
             R D      + G  +   V+ +LPR++  +LM+E  +  EV  +I+     S   + G
Sbjct: 121 AARSDVVGDGPELGHTR---VRLRLPRSQITKLMEESHDASEVAAKIISAYMESSGGIQG 178

Query: 181 NQDDE 185
            +D++
Sbjct: 181 GRDND 178

[Close]

BLAST of CsGy3G021050 vs. Swiss-Prot
Match: sp|Q6NLC8|Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-23
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN+I      K++  KVMKI+GET +I  P TA EVT+ YP ++L +S+++K FG+R+K
Sbjct: 1   MGNSI----TVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSL--------RRTCSDLHNLSASDRLECLLLSR 120
           PL+P+  L+PK  YFL++LP LP +  ++        RR  S +H + A +RL+ L+LSR
Sbjct: 61  PLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIH-VGAKERLDMLMLSR 120

Query: 121 RSLSDLQTLRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKN 159
           R++SD+   R D       +       V+ +LPR++  +LM+E  N
Sbjct: 121 RTVSDVTIGRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNN 161

[Close]

BLAST of CsGy3G021050 vs. TrEMBL
Match: tr|A0A0A0L7W0|A0A0A0L7W0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.6e-108
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PLDPHCHLEPKTLYFLLQLP LPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180
           LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

Query: 181 QDDELFWKMGGAYSGKAC 199
           QDDELFWKMGGAYSGKAC
Sbjct: 181 QDDELFWKMGGAYSGKAC 198

[Close]

BLAST of CsGy3G021050 vs. TrEMBL
Match: tr|A0A1S3C4W5|A0A1S3C4W5_CUCME (uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.1e-69
Identity = 140/161 (86.96%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 19  MKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQ 78
           MKINGET KITLPTTAYEVTSHYP+HLLYESKSL  FGLRAKPLDPHC L PKTLYFLLQ
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPV 138
           LP L     SLRRTCSDLH LSASDRLECLLLSRRS+SDLQTLRFDPQRS   DGAAK V
Sbjct: 61  LPTLYGVDRSLRRTCSDLH-LSASDRLECLLLSRRSVSDLQTLRFDPQRSLIHDGAAKSV 120

Query: 139 QVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYG 180
           QVKFQLPRAEFERLMKECKN VEVTK+IVD+CARSRDNVYG
Sbjct: 121 QVKFQLPRAEFERLMKECKNNVEVTKKIVDFCARSRDNVYG 160

[Close]

BLAST of CsGy3G021050 vs. TrEMBL
Match: tr|A0A061E984|A0A061E984_THECC (Encodes a protein whose expression is responsive to nematode infection, putative OS=Theobroma cacao OX=3641 GN=TCM_047008 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 87/179 (48.60%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN++G      K+TTKVMKINGET K+  P  A EV   YP H+L ES+S+K FG+RAK
Sbjct: 1   MGNSLG-----GKKTTKVMKINGETFKLKTPVKAEEVVKDYPGHVLLESESVKHFGIRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PL  H  LEPK LYFL++LP  P++  + RR  S + N+SA DRLE L+LSRRS+SDL  
Sbjct: 61  PLQSHQSLEPKRLYFLVELPEAPKEIVT-RRVRSGI-NMSAKDRLESLMLSRRSVSDLTL 120

Query: 121 LR---FDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDN 177
           ++     P+ S  +   +  ++VK +LPRAE ERLMKE  N+ E  ++I+  C  +  N
Sbjct: 121 MKPKCVIPEESEEEGSESGAMRVKMRLPRAEVERLMKESNNEAEAAEKIMQLCVANTRN 172

[Close]

BLAST of CsGy3G021050 vs. TrEMBL
Match: tr|A0A1R3GR43|A0A1R3GR43_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24037 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.4e-32
Identity = 92/201 (45.77%), Postives = 123/201 (61.19%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN +G      K+ TK+MKINGETIK+  P  A EV   YP H+L ES+S+K +G+RAK
Sbjct: 1   MGNTLG-----GKKFTKIMKINGETIKMKTPVKAEEVVKDYPGHVLLESESVKHYGIRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
           PL  H +LEPK LYFL++LP  P++    RR  S + N+SA DRLE L+LSRRS+SDL  
Sbjct: 61  PLLGHQNLEPKRLYFLVELPEAPKEIKVPRRVRSGI-NMSAKDRLESLMLSRRSVSDLTL 120

Query: 121 LRFDPQRSSTDDGAAKPVQ--------VKFQLPRAEFERLMKECKNKVEVTKRIVDYC-- 180
           ++  P+     +  A+ V+        VK +LP+AE ERLMKE  N+ E  ++I+  C  
Sbjct: 121 MK--PKSCVIPEETAEEVERSENGATRVKLRLPKAEVERLMKESANEAEAAEKIMQLCIA 180

Query: 181 ---ARSRDNVYGNQDDELFWK 189
              A S DN      DE+ WK
Sbjct: 181 NANATSNDNSPRGGVDEMHWK 193

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BLAST of CsGy3G021050 vs. TrEMBL
Match: tr|A0A2P4J882|A0A2P4J882_QUESU (Isoform 2 of uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_34240 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 87/202 (43.07%), Postives = 126/202 (62.38%), Query Frame = 0


Query: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60
           MGN++G      K++ KVMKINGET+K+  P  A  V   YP H+L ES+++K FG+RAK
Sbjct: 1   MGNSLG-----AKKSAKVMKINGETLKLKTPVKAGAVVKDYPGHVLLESEAVKHFGVRAK 60

Query: 61  PLDPHCHLEPKTLYFLLQLPALPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120
            L+PH  L+PK LYFL++LP  P+++   RR  S + N+SA DRLE L+LSRRS+SDL  
Sbjct: 61  ALEPHQELQPKRLYFLVELPNAPKENVP-RRVRSGI-NMSAKDRLESLMLSRRSVSDLTI 120

Query: 121 LR---FDPQRSSTDDGA--AKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRD 180
           ++     P+     +G+     ++VK +LPRAE E+LMKE ++K EV ++I+D C  +  
Sbjct: 121 MKPTSILPEECYNKEGSQHGGALRVKMRLPRAEVEKLMKEGRDKAEVAEKIMDLCRANTG 180

Query: 181 NVYGNQ---------DDELFWK 189
           N  G           D ++ WK
Sbjct: 181 NNNGGHEIAHEGMALDQQVHWK 195

The following BLAST results are available for this feature:

BLAST of CsGy3G021050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57888.1	2.4e-108	99.49	hypothetical protein Csa_3G368690 [Cucumis sativus]	[more]
XP_004151549.1	1.7e-98	99.44	PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]	[more]
XP_008457131.1	1.7e-69	86.96	PREDICTED: uncharacterized protein At1g66480 [Cucumis melo]	[more]
XP_022998216.1	5.8e-54	60.91	uncharacterized protein At1g66480-like [Cucurbita maxima]	[more]
XP_023524596.1	2.9e-53	60.91	uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G021050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01340.1	1.2e-26	43.71	Encodes a protein whose expression is responsive to nematode infection.	[more]
AT1G71015.1	2.6e-24	37.65	unknown protein	[more]
AT1G66480.1	2.6e-24	39.76	plastid movement impaired 2	[more]
AT5G37840.1	2.9e-23	34.59	BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT...	[more]

BLAST of CsGy3G021050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NLC8\|Y1648_ARATH	4.7e-23	39.76	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 P...	[more]

BLAST of CsGy3G021050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7W0\|A0A0A0L7W0_CUCSA	1.6e-108	99.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1	[more]
tr\|A0A1S3C4W5\|A0A1S3C4W5_CUCME	1.1e-69	86.96	uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 S...	[more]
tr\|A0A061E984\|A0A061E984_THECC	1.7e-33	48.60	Encodes a protein whose expression is responsive to nematode infection, putative...	[more]
tr\|A0A1R3GR43\|A0A1R3GR43_COCAP	2.4e-32	45.77	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24037 PE=4 ...	[more]
tr\|A0A2P4J882\|A0A2P4J882_QUESU	1.2e-31	43.07	Isoform 2 of uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_34240 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009624	response to nematode
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021050.1	CsGy3G021050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..117 e-value: 2.7E-16 score: 60.4
None	No IPR available	PANTHER	PTHR33148:SF6	SUBFAMILY NOT NAMED	coord: 1..183
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 1..183

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G021050	Cla013167	Watermelon (97103) v1	cgybwmB232
CsGy3G021050	Csa3G368690	Cucumber (Chinese Long) v2	cgybcuB118
CsGy3G021050	ClCG05G010920	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G021050	CSPI03G22310	Wild cucumber (PI 183967)	cgybcpiB119
CsGy3G021050	CmaCh01G003550	Cucurbita maxima (Rimu)	cgybcmaB368
CsGy3G021050	CmoCh01G003710	Cucurbita moschata (Rifu)	cgybcmoB339
CsGy3G021050	Lsi05G003030	Bottle gourd (USVL1VR-Ls)	cgyblsiB199
CsGy3G021050	Cp4.1LG02g16700	Cucurbita pepo (Zucchini)	cgybcpeB380
CsGy3G021050	CsaV3_3G021660	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G021050	Cla97C05G093220	Watermelon (97103) v2	cgybwmbB209
CsGy3G021050	Bhi01G001346	Wax gourd	cgybwgoB281
CsGy3G021050	Carg07442	Silver-seed gourd	carcgybB0757

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G021050	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G021050	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G021050	Cucurbita pepo (Zucchini)	cgybcpeB397
CsGy3G021050	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G021050	Bottle gourd (USVL1VR-Ls)	cgyblsiB192
CsGy3G021050	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G021050	Melon (DHL92) v3.6.1	cgybmedB216
CsGy3G021050	Wild cucumber (PI 183967)	cgybcpiB110