CmoCh01G003710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G003710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plastid movement impaired 2
Location	Cmo_Chr01 : 1807324 .. 1809460 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGCAATGGGAGGAGGATCAAGAAGAAGCAAGAGAACAGCAAAGGTGATGAAAATCAACGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCGTTGTCTCGTGTGCGCTCCGACCTTTGCTCGTCAGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCAGTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTGTCGCCCTACTGGACCCGTGCAAATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTCGATTTGTGGAAAACAGGCGGCATGTGTAGTGGTCAAGCGCGTGAGGTGCGTTCTTTAGCCGTTCTTTAGCTTTTTGAATTTACGTTTTAGTGAAGTGATCAAGCGGGTTGGGTTTAAGAATTCTTTTAAACTAACTTTAGTTAGGTTGATGACCGGAACAACTCCAATTGAGTTCACAAATTAATCTTCCATTTTTGGGTTTTTTTTTTTAATCATTTAAAAATATTTTACTTATCCACCGTACATGTTAGGTAATCTTGGTTAGTCGACCTGAAAATATTTTGAGCTAGTTAAGTTGATGACTTGAACCGACTGGAATTTTTCAGCTCAAAAAATTGAATCGAACCCGACCTTTATGATAGGTAATCTGGATTGGTCATATTCTCGAATCATTTAAACATCCCTAAAGATTCATATTCTTTTGGCGTATTCTCTACTCTTCCGAAGAAATTTTTTTTCATTAAAATAATAATAATAATACACTTTATCAAGGAAAAGAAAAATATTTTAAAGTACTTTGAGTTGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTGTATTTTGAAGTACTTTTTATATCTTAATTAAATTTCAAGAAAATAGTTAATTTATTTTCTTAGATTACATTAATTTAAAAATAATTTATAAAGCATGCGTATATATTTATATATAAAAGATTAAAGTAAATAAAAGATAATTTAAATAAATTAATTAAAAATAAATAAAAATAAAAATAAAAAGAGTGGGGTGGGTATGAGTTTATATTTGACTTACAAAATAAATATATATTTATTGACTTTGATTATAAAAAAAACTTAATAAAAGGGTTTTAGTAAATAATAAATATAATTGAAAAAAAAAAGTCAAAAGTAAATAAACAACACATAAATCTAAAGTGCTTAGTTGGGGACACATCTTTTATAATTTAAAATATTTATTATTATTATTATTTCGGGAAATGAATAGGGAAAATGTTGATGAGGCAATAATATATATATTTTTTGAGATAATATAGTATGGAGAGCTTAAGTTCCACTTGATATATATATATATATATGTAGCATTTGTAAATTTATTTTTAAAAAATAAAATAATTAATCCTTTTGAAATATAAACTAATAATTGTTTCTTAAACCCTAAATATTTGCAGAAAAGAGTGAGCTTTGTGAAACAATGAAGAGGATGGTTCTGCACAATGGCAATGCATTGACCTTTCATTTTGGCTCTCTCTCTCTCTCTAATGTATAGAATGAGTTCGTGTATCCTCGTTCTAGGAATTGATCGATA

mRNA sequence

ATGGGAAATGCAATGGGAGGAGGATCAAGAAGAAGCAAGAGAACAGCAAAGGTGATGAAAATCAACGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCGTTGTCTCGTGTGCGCTCCGACCTTTGCTCGTCAGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCAGTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTGTCGCCCTACTGGACCCGTGCAAATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTCGATTTGTGGAAAACAGGCGGCATGTGTAGTGGTCAAGCGCGTGAGAAAAGAGTGAGCTTTGTGAAACAATGAAGAGGATGGTTCTGCACAATGGCAATGCATTGACCTTTCATTTTGGCTCTCTCTCTCTCTCTAATGTATAGAATGAGTTCGTGTATCCTCGTTCTAGGAATTGATCGATA

Coding sequence (CDS)

ATGGGAAATGCAATGGGAGGAGGATCAAGAAGAAGCAAGAGAACAGCAAAGGTGATGAAAATCAACGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCGTTGTCTCGTGTGCGCTCCGACCTTTGCTCGTCAGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCAGTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTGTCGCCCTACTGGACCCGTGCAAATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTCGATTTGTGGAAAACAGGCGGCATGTGTAGTGGTCAAGCGCGTGAGAAAAGAGTGAGCTTTGTGAAACAATGA

Homology

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BLAST of CmoCh01G003710 vs. Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 84/209 (40.19%), Postives = 121/209 (57.89%), Query Frame = 1


Query: 5   MGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSVSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR+VSD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEA-AERIVDLW----- 184
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A AE+I+ ++     
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSG 180

Query: 185 KTGGMCSG------------QAREKRVSF 187
           + GG   G            +AREK+VSF
Sbjct: 181 ELGGGRGGVDGRRELGSGEIKAREKQVSF 208

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BLAST of CmoCh01G003710 vs. TrEMBL
Match: A0A0A0L7W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G368690 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 118/197 (59.90%), Postives = 138/197 (70.05%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNA+G GSRR KRT KVMKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSVSDLQS 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRS+SDLQ+
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 FRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVD------------ 180
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

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BLAST of CmoCh01G003710 vs. TrEMBL
Match: A0A059BT95_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-37
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSVSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

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BLAST of CmoCh01G003710 vs. TrEMBL
Match: A0A059BSU6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-37
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSVSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

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BLAST of CmoCh01G003710 vs. TrEMBL
Match: V4UVZ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012690mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 88/177 (49.72%), Postives = 121/177 (68.36%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN +GG     +R AKVMKI+GET K++TP  A +V   +P ++L DS+++   G+RAK
Sbjct: 1   MGNTIGG-----RRKAKVMKIDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PL+P  QLKPK +YFL+ LP LP   +   RVRS +  SA DRLECLMLSRR+VSDL + 
Sbjct: 61  PLEPRQQLKPKKVYFLVELPKLPDEEKITRRVRSGIQMSAKDRLECLMLSRRAVSDLTAV 120

Query: 121 RL-DPDGMSTACRP-TGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW--KTGG 174
            +    G   A  P TG +++K+R+PR + E+LM+ES +  E AE+IVDL+  K+GG
Sbjct: 121 NVRSSHGSEVAPGPGTGQMRVKMRLPRAQVEKLMEESANDEEVAEKIVDLYVEKSGG 172

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BLAST of CmoCh01G003710 vs. TrEMBL
Match: B9HJA1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.0e-35
Identity = 95/209 (45.45%), Postives = 126/209 (60.29%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN +GG     K+TAKVMKINGETFK +TP  A  V   +P H+L +S+++   G+RAK
Sbjct: 1   MGNTLGG-----KKTAKVMKINGETFKFKTPVKAGDVVKDYPGHVLLESEAVKHYGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PL+ H  L PK LYFL+ LP  P    P  RVRS +  SA DRLE LMLSRRS SDL   
Sbjct: 61  PLEAHQDLVPKRLYFLVELPETPTERVP-RRVRSGINMSAKDRLESLMLSRRSTSDLSIM 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDL------------ 180
           +  P  + +     G +++K+R+P+E+ E+LM+ESK + EAA +I+DL            
Sbjct: 121 K--PSSIVSEEAKRGAMRVKMRLPKEQVEKLMQESKDEAEAAAKILDLCMANTAGESGLS 180

Query: 181 ----WKTGG------MCSGQAREKRVSFV 188
               WK+GG          +AREKRVSF+
Sbjct: 181 QQVHWKSGGHGRVGNQGIIKAREKRVSFL 201

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BLAST of CmoCh01G003710 vs. TAIR10
Match: AT1G66480.1 (AT1G66480.1 plastid movement impaired 2)

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-30
Identity = 84/209 (40.19%), Postives = 121/209 (57.89%), Query Frame = 1


Query: 5   MGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSVSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR+VSD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEA-AERIVDLW----- 184
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A AE+I+ ++     
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSG 180

Query: 185 KTGGMCSG------------QAREKRVSF 187
           + GG   G            +AREK+VSF
Sbjct: 181 ELGGGRGGVDGRRELGSGEIKAREKQVSF 208

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BLAST of CmoCh01G003710 vs. TAIR10
Match: AT2G01340.1 (AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-29
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++GG     K+T KVMKI+GETFK++TP TA +V    P H+L DS+S+   G RAK
Sbjct: 1   MGNSLGG-----KKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PL+   +L+ K LYF++     P    P  RVRS +  SA +RLE LML+RRS SDL S 
Sbjct: 61  PLEAKQRLEAKRLYFVVE----PVKECPPRRVRSGIHVSAKERLESLMLARRSSSDL-SI 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
              P G +T        ++K+R+P+ E E+L+KE  ++ EA ++I  L+
Sbjct: 121 LKPPGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALF 159

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BLAST of CmoCh01G003710 vs. TAIR10
Match: AT5G37840.1 (AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 118.6 bits (296), Expect = 4.1e-27
Identity = 78/203 (38.42%), Postives = 118/203 (58.13%), Query Frame = 1


Query: 10  RRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLK 69
           RR+K   KVMKI+G+ F+++TP TA   T  +P  +L DS+++ +LG+RAKPL+P+  LK
Sbjct: 8   RRNK--VKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEPNQILK 67

Query: 70  PKTLYFLLHLPPLPGSHR-PLSRVRS-DLCSSASDRLECLMLSRRSVSDLQSFRLDPDGM 129
           P   YFL+ LPP+   ++ P  RV S ++   A +RLE LMLSRR+VSD+ + R D  G 
Sbjct: 68  PNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARSDVVGD 127

Query: 130 STACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW--KTGGMCSG-------- 189
                  G  +++LR+PR +  +LM+ES    E A +I+  +   +GG+  G        
Sbjct: 128 GP---ELGHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYMESSGGIQGGRDNDGLRQ 187

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BLAST of CmoCh01G003710 vs. TAIR10
Match: AT1G71015.1 (AT1G71015.1 unknown protein)

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 68/168 (40.48%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G     +K+TA +M INGE+FK++TP  A  V    P H+L +S+++ +LG+RAK
Sbjct: 1   MGNSLG-----TKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PL+PH  L+ K +YF++ LP       P  RVRS +  SA +RLE L LSRRS SDL   
Sbjct: 61  PLEPHQNLESKRIYFMVELPRTWKERTP-RRVRSGIQMSAKERLENLKLSRRSSSDLSVM 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDL 169
           +   + ++   R      +KL++P+ + E+L KES+S  + + +I  L
Sbjct: 121 KKKTE-VNDEEREVS--SVKLKLPKWKIEKLRKESESGSDFSNKITQL 159

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BLAST of CmoCh01G003710 vs. NCBI nr
Match: gi|700202755|gb|KGN57888.1| (hypothetical protein Csa_3G368690 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.0e-52
Identity = 118/197 (59.90%), Postives = 138/197 (70.05%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNA+G GSRR KRT KVMKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSVSDLQS 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRS+SDLQ+
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 FRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVD------------ 180
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: gi|449467677|ref|XP_004151549.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 4.1e-45
Identity = 104/179 (58.10%), Postives = 123/179 (68.72%), Query Frame = 1


Query: 19  MKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAKPLDPH  L+PKTLYFLL 
Sbjct: 1   MKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAKPLDPHCHLEPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSVSDLQSFRLDPDGMSTACRPTGPV 138
           LP LP  H  L R  SDL + SASDRLECL+LSRRS+SDLQ+ R DP   ST      PV
Sbjct: 61  LPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQTLRFDPQRSSTDDGAAKPV 120

Query: 139 QIKLRVPREEFERLMKESKSKVEAAERIVD-----------------LWKTGGMCSGQA 180
           Q+K ++PR EFERLMKE K+KVE  +RIVD                  WK GG  SG+A
Sbjct: 121 QVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGNQDDELFWKMGGAYSGKA 179

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: gi|659114591|ref|XP_008457131.1| (PREDICTED: uncharacterized protein At1g66480-like [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 2.7e-44
Identity = 97/149 (65.10%), Postives = 113/149 (75.84%), Query Frame = 1


Query: 19  MKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGETFKI  PTTA++VT+H+PNHLLY+S+S+ Q GLRAKPLDPH QL+PKTLYFLL 
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSFRLDPDGMSTACRPTGPVQ 138
           LP L G  R L R  SDL  SASDRLECL+LSRRSVSDLQ+ R DP            VQ
Sbjct: 61  LPTLYGVDRSLRRTCSDLHLSASDRLECLLLSRRSVSDLQTLRFDPQRSLIHDGAAKSVQ 120

Query: 139 IKLRVPREEFERLMKESKSKVEAAERIVD 168
           +K ++PR EFERLMKE K+ VE  ++IVD
Sbjct: 121 VKFQLPRAEFERLMKECKNNVEVTKKIVD 149

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: gi|629103864|gb|KCW69333.1| (hypothetical protein EUGRSUZ_F02820 [Eucalyptus grandis])

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSVSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: gi|702374332|ref|XP_010062234.1| (PREDICTED: uncharacterized protein At1g66480-like [Eucalyptus grandis])

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 87/170 (51.18%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G G  R    AKVMKI GET K+RTP  A QV   HP H+L DS+S+   G+RA+
Sbjct: 1   MGNSVGSGRNRR---AKVMKITGETLKLRTPVRACQVVDGHPGHVLLDSESVKHFGIRAR 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSH-RPLSRVRSDLCSSASDRLECLMLSRRSVSDLQS 120
           PL+PHH+LKPK +YFL+ LP  P  H +   RVRS L   A DRLECLMLSRR+ SD+  
Sbjct: 61  PLEPHHELKPKKIYFLVELPKFPDGHEKAFRRVRSGLQMGAKDRLECLMLSRRAASDM-- 120

Query: 121 FRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
             + P   S       PVQ+K+R+PR + ++LM+ES    E A RIVDL+
Sbjct: 121 --VRPTEASFQPESAAPVQMKMRIPRAQLDKLMEESSDDAEVARRIVDLY 163

The following BLAST results are available for this feature:

BLAST of CmoCh01G003710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1648_ARATH	1.6e-28	40.19	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1	[more]

BLAST of CmoCh01G003710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7W0_CUCSA	1.4e-52	59.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G368690 PE=4 SV=1	[more]
A0A059BT95_EUCGR	4.9e-37	51.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1	[more]
A0A059BSU6_EUCGR	4.9e-37	51.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02820 PE=4 SV=1	[more]
V4UVZ8_9ROSI	2.0e-35	49.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012690mg PE=4 SV=1	[more]
B9HJA1_POPTR	6.0e-35	45.45	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12770g PE=4 SV=1	[more]

BLAST of CmoCh01G003710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66480.1	8.8e-30	40.19	plastid movement impaired 2	[more]
AT2G01340.1	1.5e-29	44.38	Encodes a protein whose expression is responsive to nematode infecti...	[more]
AT5G37840.1	4.1e-27	38.42	BEST Arabidopsis thaliana protein match is: plastid movement impaire...	[more]
AT1G71015.1	2.2e-25	40.48	unknown protein	[more]

BLAST of CmoCh01G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202755\|gb\|KGN57888.1\|	2.0e-52	59.90	hypothetical protein Csa_3G368690 [Cucumis sativus]	[more]
gi\|449467677\|ref\|XP_004151549.1\|	4.1e-45	58.10	PREDICTED: uncharacterized protein At1g66480-like [Cucumis sativus]	[more]
gi\|659114591\|ref\|XP_008457131.1\|	2.7e-44	65.10	PREDICTED: uncharacterized protein At1g66480-like [Cucumis melo]	[more]
gi\|629103864\|gb\|KCW69333.1\|	7.0e-37	51.18	hypothetical protein EUGRSUZ_F02820 [Eucalyptus grandis]	[more]
gi\|702374332\|ref\|XP_010062234.1\|	7.0e-37	51.18	PREDICTED: uncharacterized protein At1g66480-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009624	response to nematode
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003710.1	CmoCh01G003710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..119 score: 1.1
None	No IPR available	unknown	Coil	Coil	coord: 145..165 scor
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 2..168 score: 2.6
None	No IPR available	PANTHER	PTHR33148:SF6	SUBFAMILY NOT NAMED	coord: 2..168 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G003710	Cucsa.012710	Cucumber (Gy14) v1	cgycmoB0552
CmoCh01G003710	CmaCh01G003550	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G003710	Cla013167	Watermelon (97103) v1	cmowmB427
CmoCh01G003710	ClCG05G010920	Watermelon (Charleston Gray)	cmowcgB406
CmoCh01G003710	Lsi05G003030	Bottle gourd (USVL1VR-Ls)	cmolsiB430
CmoCh01G003710	Cp4.1LG02g16700	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G003710	CsaV3_3G021660	Cucumber (Chinese Long) v3	cmocucB0532
CmoCh01G003710	Cla97C05G093220	Watermelon (97103) v2	cmowmbB454
CmoCh01G003710	Bhi01G001346	Wax gourd	cmowgoB0556
CmoCh01G003710	CsGy3G021050	Cucumber (Gy14) v2	cgybcmoB339
CmoCh01G003710	Carg07442	Silver-seed gourd	carcmoB1033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G003710	Cucurbita maxima (Rimu)	cmacmoB257
CmoCh01G003710	Melon (DHL92) v3.5.1	cmomeB421
CmoCh01G003710	Cucurbita pepo (Zucchini)	cmocpeB453
CmoCh01G003710	Melon (DHL92) v3.6.1	cmomedB483
CmoCh01G003710	Silver-seed gourd	carcmoB0249
CmoCh01G003710	Cucurbita moschata (Rifu)	cmocmoB203