Csa3G346910 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G346910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLittle protein 1
LocationChr3 : 18133991 .. 18134401 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCCTCCTCCTACTCCTCCTATTGCTCGTTATACGCTCCGTTGTGCTCCGGCGAATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCGATTTGAGATAATACGCAAGAATGCTGTTCCTTTACATGCTTTTTTTCCCCAAGTCCAATAATGTATATTAATAATGGATCTCAATTTAAGAGTAAAATTAATAGGCTAAATATACCCTATGTCTCTT

mRNA sequence

ATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCGATTTGA

Coding sequence (CDS)

ATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCGATTTGA

Protein sequence

MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI*
Homology
[Close]
BLAST of Csa3G346910 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]
BLAST of Csa3G346910 vs. TrEMBL
Match: I3SB72_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.7e-33
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATVVYPSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

[Close]
BLAST of Csa3G346910 vs. TrEMBL
Match: A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.8e-33
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1 

Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]
BLAST of Csa3G346910 vs. TrEMBL
Match: D7TSS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPA VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

[Close]
BLAST of Csa3G346910 vs. TrEMBL
Match: K7LRJ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G218400 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-32
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIGVPIC++CG  SNPCRCKVVGPTLGFLAFA AAVVEWPVGALV+CFRH KGR+IM H
Sbjct: 2  VGIGVPICVQCGNTSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHSKGRKIMGH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATV+YPSV+NA+PI
Sbjct: 62 PATVIYPSVTNAIPI 76

[Close]
BLAST of Csa3G346910 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 119.4 bits (298), Expect = 9.9e-28
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALV+ F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAVPI 78
          VYP VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

[Close]
BLAST of Csa3G346910 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]
BLAST of Csa3G346910 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M VG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]
BLAST of Csa3G346910 vs. NCBI nr
Match: gi|388498896|gb|AFK37514.1| (unknown [Lotus japonicus])

HSP 1 Score: 147.5 bits (371), Expect = 9.6e-33
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATVVYPSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

[Close]
BLAST of Csa3G346910 vs. NCBI nr
Match: gi|702374339|ref|XP_010062235.1| (PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1 

Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]
BLAST of Csa3G346910 vs. NCBI nr
Match: gi|225453138|ref|XP_002273470.1| (PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPA VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

The following BLAST results are available for this feature:
BLAST of Csa3G346910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA45_CUCSA1.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1[more]
I3SB72_LOTJA6.7e-3385.33Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A059BUM2_EUCGR8.8e-3384.42Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1[more]
D7TSS2_VITVI1.1e-3283.12Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=... [more]
K7LRJ2_SOYBN5.7e-3284.00Uncharacterized protein OS=Glycine max GN=GLYMA_11G218400 PE=4 SV=1[more]
BLAST of Csa3G346910 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03341.19.9e-2870.42 unknown protein[more]
BLAST of Csa3G346910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466446|ref|XP_004150937.1|1.5e-38100.00PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus][more]
gi|659114483|ref|XP_008457074.1|1.3e-3796.10PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo][more]
gi|388498896|gb|AFK37514.1|9.6e-3385.33unknown [Lotus japonicus][more]
gi|702374339|ref|XP_010062235.1|1.3e-3284.42PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis][more]
gi|225453138|ref|XP_002273470.1|1.6e-3283.12PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU164613cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G346910.1Csa3G346910.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU164613CU164613transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34673FAMILY NOT NAMEDcoord: 1..77
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G346910Cla013169Watermelon (97103) v1cuwmB245
Csa3G346910MELO3C020291Melon (DHL92) v3.5.1cumeB246
Csa3G346910ClCG05G010950Watermelon (Charleston Gray)cuwcgB233
Csa3G346910MELO3C020291.2Melon (DHL92) v3.6.1cumedB239
Csa3G346910Cla97C05G093240Watermelon (97103) v2cuwmbB218
Csa3G346910CSPI03G21860Wild cucumber (PI 183967)cpicuB120
Csa3G346910Cucsa.012680Cucumber (Gy14) v1cgycuB290
Csa3G346910CmoCh14G008670Cucurbita moschata (Rifu)cmocuB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G346910Cucurbita maxima (Rimu)cmacuB455
Csa3G346910Cucurbita moschata (Rifu)cmocuB442
Csa3G346910Cucurbita pepo (Zucchini)cpecuB547
Csa3G346910Cucumber (Gy14) v2cgybcuB109
Csa3G346910Silver-seed gourdcarcuB0780
Csa3G346910Wax gourdcuwgoB299