Cla97C05G093240 (gene) Watermelon (97103) v2

Overview
NameCla97C05G093240
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionCold-regulated protein, putative
LocationCla97Chr05 : 11965379 .. 11965612 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

mRNA sequence

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

Coding sequence (CDS)

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

Protein sequence

MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI
Homology
[Close]
BLAST of Cla97C05G093240 vs. NCBI nr
Match: XP_008457074.1 (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]
BLAST of Cla97C05G093240 vs. NCBI nr
Match: XP_004150937.1 (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hypothetical protein Csa_3G346910 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]
BLAST of Cla97C05G093240 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 4.7e-36
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVPIC+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]
BLAST of Cla97C05G093240 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 6.1e-36
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]
BLAST of Cla97C05G093240 vs. NCBI nr
Match: XP_022143411.1 (uncharacterized protein LOC111013291 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFA AA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]
BLAST of Cla97C05G093240 vs. TrEMBL
Match: tr|A0A1S3C5C8|A0A1S3C5C8_CUCME (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]
BLAST of Cla97C05G093240 vs. TrEMBL
Match: tr|A0A0A0LA45|A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]
BLAST of Cla97C05G093240 vs. TrEMBL
Match: tr|A0A2N9J3H0|A0A2N9J3H0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.5e-33
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M  GIG+P+C++CGT SNPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MTGGIGIPVCVQCGTPSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]
BLAST of Cla97C05G093240 vs. TrEMBL
Match: tr|A0A218XJX3|A0A218XJX3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-33
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MA+G+GVPIC+ECGT SNPCRCKVVGPTLGFLAF  AA+VEWP+GALVYCFRH KGRRIM
Sbjct: 1  MALGVGVPICVECGTTSNPCRCKVVGPTLGFLAFTAAAVVEWPLGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSV+NA+PI
Sbjct: 61 AHPATVVYPSVTNAIPI 77

[Close]
BLAST of Cla97C05G093240 vs. TrEMBL
Match: tr|A0A059BUM2|A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MA+GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]
BLAST of Cla97C05G093240 vs. TAIR10
Match: AT3G03341.1 (unknown protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-27
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0 

Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALVY F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VFPSVSNAVPI 78
          V+P VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

The following BLAST results are available for this feature:
BLAST of Cla97C05G093240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008457074.11.6e-3693.51PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo][more]
XP_004150937.12.8e-3694.81PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hy... [more]
XP_023528466.14.7e-3693.51uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo][more]
XP_022935253.16.1e-3692.21uncharacterized protein LOC111442190 [Cucurbita moschata][more]
XP_022143411.11.4e-3594.81uncharacterized protein LOC111013291 [Momordica charantia][more]
BLAST of Cla97C05G093240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C5C8|A0A1S3C5C8_CUCME1.1e-3693.51uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=... [more]
tr|A0A0A0LA45|A0A0A0LA45_CUCSA1.8e-3694.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1[more]
tr|A0A2N9J3H0|A0A2N9J3H0_FAGSY5.5e-3385.71Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1[more]
tr|A0A218XJX3|A0A218XJX3_PUNGR9.4e-3384.42Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1[more]
tr|A0A059BUM2|A0A059BUM2_EUCGR1.6e-3284.42Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02822 PE=4 SV... [more]
BLAST of Cla97C05G093240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G093240 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03341.12.2e-2770.42unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G093240.1Cla97C05G093240.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34673FAMILY NOT NAMEDcoord: 1..77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G093240Cla013169Watermelon (97103) v1wmwmbB206
Cla97C05G093240Csa3G346910Cucumber (Chinese Long) v2cuwmbB218
Cla97C05G093240MELO3C020291Melon (DHL92) v3.5.1mewmbB434
Cla97C05G093240ClCG05G010950Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G093240CSPI03G21860Wild cucumber (PI 183967)cpiwmbB224
Cla97C05G093240Cucsa.012680Cucumber (Gy14) v1cgywmbB351
Cla97C05G093240CmoCh14G008670Cucurbita moschata (Rifu)cmowmbB244
Cla97C05G093240MELO3C020291.2Melon (DHL92) v3.6.1medwmbB424
Cla97C05G093240CsaV3_3G021640Cucumber (Chinese Long) v3cucwmbB220
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G093240Silver-seed gourdcarwmbB0181
Cla97C05G093240Silver-seed gourdcarwmbB0795
Cla97C05G093240Cucumber (Gy14) v2cgybwmbB209
Cla97C05G093240Cucurbita maxima (Rimu)cmawmbB264
Cla97C05G093240Cucurbita maxima (Rimu)cmawmbB473
Cla97C05G093240Cucurbita moschata (Rifu)cmowmbB454
Cla97C05G093240Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G093240Wax gourdwgowmbB179