MELO3C020291 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020291
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative cold-regulated protein
Location	chr6 : 13730870 .. 13731091 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGGCTGTGGAACCCTCAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCCGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

mRNA sequence

ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGGCTGTGGAACCCTCAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCCGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Coding sequence (CDS)

ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGGCTGTGGAACCCTCAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCCGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Protein sequence

MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPVTVVYPSVSNAIPI*

Homology

[Close]

BLAST of MELO3C020291 vs. TrEMBL
Match: A0A0A0L786_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346920 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.0e-30
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGV LGVP CI CGT RNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRH    RIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020291 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.5e-26
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGVG+GVP CI CGT  NPCRC+VVGP+LGFLA  V AVVEWPVGALV+ FRH    RIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020291 vs. TrEMBL
Match: K7LRJ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G218400 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-24
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 3  VGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIMGH 62
          VG+GVP C+ CG   NPCRC+VVGP+LGFLA    AVVEWPVGALVY FRH    +IMGH
Sbjct: 2  VGIGVPICVQCGNTSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHSKGRKIMGH 61

Query: 63 PVTVVYPSVSNAIPI 74
          P TV+YPSV+NAIPI
Sbjct: 62 PATVIYPSVTNAIPI 76

[Close]

BLAST of MELO3C020291 vs. TrEMBL
Match: A0A072UZW1_MEDTR (Cold-regulated protein, putative OS=Medicago truncatula GN=MTR_3g067715 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.0e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 3  VGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIMGH 62
          VG+GVP C+ CGT  NPCRC+VVGP+LGF+A V  AVVEWPVGALVY+F+H    RIMGH
Sbjct: 2  VGVGVPICVQCGTRSNPCRCKVVGPTLGFVAFVAAAVVEWPVGALVYIFKHKKGRRIMGH 61

Query: 63 PVTVVYPSVSNAIPI 74
          P TVVYP V+ AIPI
Sbjct: 62 PATVVYPKVNRAIPI 76

[Close]

BLAST of MELO3C020291 vs. TrEMBL
Match: A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.0e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          M +G+G+P C+ CGT  NPCRC+VVGP++GFLA    AVVEWPVGALVY FRH    RIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HP TVVYPSV NAIPI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of MELO3C020291 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-22
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 7  VPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIMGHPVTV 66
          +P C+ CGT  NPCRC+VVGP+LG +A V   +VEWPVGALVY+F+H    RIMGHP T 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAIPI 74
          VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72

[Close]

BLAST of MELO3C020291 vs. NCBI nr
Match: gi|659114485|ref|XP_008457075.1| (PREDICTED: uncharacterized protein LOC103496843 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV 60
          MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV
Sbjct: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV 60

Query: 61 TVVYPSVSNAIPI 74
          TVVYPSVSNAIPI
Sbjct: 61 TVVYPSVSNAIPI 73

[Close]

BLAST of MELO3C020291 vs. NCBI nr
Match: gi|449466444|ref|XP_004150936.1| (PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 7.2e-30
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGV LGVP CI CGT RNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRH    RIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020291 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGVG+GVP CI CGT  NPCRC+VVGP+LGFLA  V AVVEWPVGALV+ FRH    RIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020291 vs. NCBI nr
Match: gi|769814026|ref|XP_011622765.1| (PREDICTED: uncharacterized protein LOC105420519 [Amborella trichopoda])

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-25
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 1   MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
           + VG+GVP C+ CGT  NPCRC+VVGP+LGFLA    AVVEWPVGA+VYLFRH    RIM
Sbjct: 37  IAVGVGVPICVQCGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGAVVYLFRHMTGRRIM 96

Query: 61  GHPVTVVYPSVSNAIPI 74
            HPVTVVYPSVSNAIPI
Sbjct: 97  AHPVTVVYPSVSNAIPI 113

[Close]

BLAST of MELO3C020291 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-25
Identity = 58/77 (75.32%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          M VG+GVP CI CGT  NPCRC+VVGP+LGFLA  V AVVEWPVGALV+ FRH    RIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HP TVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

The following BLAST results are available for this feature:

BLAST of MELO3C020291 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L786_CUCSA	5.0e-30	88.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346920 PE=4 SV=1	[more]
A0A0A0LA45_CUCSA	7.5e-26	75.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1	[more]
K7LRJ2_SOYBN	4.1e-24	70.67	Uncharacterized protein OS=Glycine max GN=GLYMA_11G218400 PE=4 SV=1	[more]
A0A072UZW1_MEDTR	7.0e-24	70.67	Cold-regulated protein, putative OS=Medicago truncatula GN=MTR_3g067715 PE=4 SV=...	[more]
A0A059BUM2_EUCGR	7.0e-24	68.83	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1	[more]

BLAST of MELO3C020291 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	1.2e-22	63.38	unknown protein	[more]

BLAST of MELO3C020291 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114485\|ref\|XP_008457075.1\|	2.6e-35	100.00	PREDICTED: uncharacterized protein LOC103496843 [Cucumis melo]	[more]
gi\|449466444\|ref\|XP_004150936.1\|	7.2e-30	88.31	PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus]	[more]
gi\|449466446\|ref\|XP_004150937.1\|	1.1e-25	75.32	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus]	[more]
gi\|769814026\|ref\|XP_011622765.1\|	4.1e-25	74.03	PREDICTED: uncharacterized protein LOC105420519 [Amborella trichopoda]	[more]
gi\|659114483\|ref\|XP_008457074.1\|	5.4e-25	75.32	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020291T1	MELO3C020291T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..73 score: 1.8
None	No IPR available	PANTHER	PTHR34673:SF1	SUBFAMILY NOT NAMED	coord: 1..73 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020291	Csa3G346910	Cucumber (Chinese Long) v2	cumeB246
MELO3C020291	Cla013169	Watermelon (97103) v1	mewmB461
MELO3C020291	ClCG05G010950	Watermelon (Charleston Gray)	mewcgB427
MELO3C020291	Cla97C05G093240	Watermelon (97103) v2	mewmbB434
MELO3C020291	CSPI03G21860	Wild cucumber (PI 183967)	cpimeB243
MELO3C020291	Cucsa.012680	Cucumber (Gy14) v1	cgymeB343
MELO3C020291	CmoCh14G008670	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020291	CsaV3_3G021640	Cucumber (Chinese Long) v3	cucmeB249

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020291	Cucurbita maxima (Rimu)	cmameB243
MELO3C020291	Cucurbita maxima (Rimu)	cmameB431
MELO3C020291	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020291	Wild cucumber (PI 183967)	cpimeB241
MELO3C020291	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020291	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020291	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020291	Cucumber (Gy14) v2	cgybmeB212
MELO3C020291	Silver-seed gourd	carmeB0181
MELO3C020291	Silver-seed gourd	carmeB0756
MELO3C020291	Wax gourd	mewgoB530