Cucsa.012680 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.012680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Little protein 1
Location	scaffold00164 : 362265 .. 362448 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCAGTGTCTAATGCGGTTCCGATTTGA

mRNA sequence

CAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCAGTGTCTAATGCGGTTCCGATTTGA

Coding sequence (CDS)

CAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCAGTGTCTAATGCGGTTCCGATTTGA

Protein sequence

NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI*

Homology

[Close]

BLAST of Cucsa.012680 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI
Sbjct: 18 NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 77

[Close]

BLAST of Cucsa.012680 vs. TrEMBL
Match: D7TSS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-25
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIMAHPA VVYPSVSNA PI
Sbjct: 18 NPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIMAHPAAVVYPSVSNAFPI 77

[Close]

BLAST of Cucsa.012680 vs. TrEMBL
Match: B4UWC1_ARAHY (Little protein 1 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAHPATVVYPSV+NA+PI
Sbjct: 17 NPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHMKGRKIMAHPATVVYPSVTNAIPI 76

[Close]

BLAST of Cucsa.012680 vs. TrEMBL
Match: A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIMAHPATVVYPSV NA+PI
Sbjct: 18 NPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIMAHPATVVYPSVINAIPI 77

[Close]

BLAST of Cucsa.012680 vs. TrEMBL
Match: A0A022RMM9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b021644mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLGFLAFA AA+VEWPVGALV+CFRH KGRRIMAHPATVVYP+VSN++PI
Sbjct: 8  NPCRCKVVGPTLGFLAFAAAALVEWPVGALVYCFRHMKGRRIMAHPATVVYPAVSNSIPI 67

[Close]

BLAST of Cucsa.012680 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-22
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLG +AF  A +VEWPVGALV+ F+H KGRRIM HPAT VYP VS ++PI
Sbjct: 13 NPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATHVYPKVSRSIPI 72

[Close]

BLAST of Cucsa.012680 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI
Sbjct: 18 NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 77

[Close]

BLAST of Cucsa.012680 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNA+PI
Sbjct: 18 NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAIPI 77

[Close]

BLAST of Cucsa.012680 vs. NCBI nr
Match: gi|225453138|ref|XP_002273470.1| (PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera])

HSP 1 Score: 120.6 bits (301), Expect = 9.8e-25
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIMAHPA VVYPSVSNA PI
Sbjct: 18 NPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIMAHPAAVVYPSVSNAFPI 77

[Close]

BLAST of Cucsa.012680 vs. NCBI nr
Match: gi|1012204356|ref|XP_015931480.1| (PREDICTED: uncharacterized protein LOC107457816 [Arachis duranensis])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-24
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAHPATVVYPSV+NA+PI
Sbjct: 17 NPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHMKGRKIMAHPATVVYPSVTNAIPI 76

[Close]

BLAST of Cucsa.012680 vs. NCBI nr
Match: gi|604342265|gb|EYU41329.1| (hypothetical protein MIMGU_mgv11b021644mg [Erythranthe guttata])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-24
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1  NPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI 60
          NPCRCKVVGPTLGFLAFA AA+VEWPVGALV+CFRH KGRRIMAHPATVVYP+VSN++PI
Sbjct: 8  NPCRCKVVGPTLGFLAFAAAALVEWPVGALVYCFRHMKGRRIMAHPATVVYPAVSNSIPI 67

The following BLAST results are available for this feature:

BLAST of Cucsa.012680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA45_CUCSA	1.1e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1	[more]
D7TSS2_VITVI	6.9e-25	91.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=...	[more]
B4UWC1_ARAHY	1.5e-24	88.33	Little protein 1 OS=Arachis hypogaea PE=2 SV=1	[more]
A0A059BUM2_EUCGR	1.5e-24	90.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1	[more]
A0A022RMM9_ERYGU	1.5e-24	88.33	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b021644mg PE=4 SV=1	[more]

BLAST of Cucsa.012680 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	1.7e-22	73.33	unknown protein	[more]

BLAST of Cucsa.012680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466446\|ref\|XP_004150937.1\|	1.6e-27	100.00	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus]	[more]
gi\|659114483\|ref\|XP_008457074.1\|	2.1e-27	98.33	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
gi\|225453138\|ref\|XP_002273470.1\|	9.8e-25	91.67	PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera]	[more]
gi\|1012204356\|ref\|XP_015931480.1\|	2.2e-24	88.33	PREDICTED: uncharacterized protein LOC107457816 [Arachis duranensis]	[more]
gi\|604342265\|gb\|EYU41329.1\|	2.2e-24	88.33	hypothetical protein MIMGU_mgv11b021644mg [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.012680.1	Cucsa.012680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..60 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.012680	Cla013169	Watermelon (97103) v1	cgywmB367
Cucsa.012680	Csa3G346910	Cucumber (Chinese Long) v2	cgycuB290
Cucsa.012680	MELO3C020291	Melon (DHL92) v3.5.1	cgymeB343
Cucsa.012680	ClCG05G010950	Watermelon (Charleston Gray)	cgywcgB345
Cucsa.012680	CSPI03G21860	Wild cucumber (PI 183967)	cgycpiB299
Cucsa.012680	CmoCh14G008670	Cucurbita moschata (Rifu)	cgycmoB0549
Cucsa.012680	MELO3C020291.2	Melon (DHL92) v3.6.1	cgymedB338
Cucsa.012680	CsaV3_3G021640	Cucumber (Chinese Long) v3	cgycucB303
Cucsa.012680	Cla97C05G093240	Watermelon (97103) v2	cgywmbB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.012680	Wax gourd	cgywgoB393
Cucsa.012680	Cucurbita maxima (Rimu)	cgycmaB0548
Cucsa.012680	Cucurbita maxima (Rimu)	cgycmaB0551
Cucsa.012680	Cucurbita moschata (Rifu)	cgycmoB0552
Cucsa.012680	Cucurbita pepo (Zucchini)	cgycpeB0531
Cucsa.012680	Cucurbita pepo (Zucchini)	cgycpeB0532
Cucsa.012680	Bottle gourd (USVL1VR-Ls)	cgylsiB322
Cucsa.012680	Silver-seed gourd	carcgyB0859