MELO3C020291.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020291.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Little protein 1
Location	chr06 : 14808017 .. 14808238 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGGCTGTGGAACCCTCAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCCGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

mRNA sequence

ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGGCTGTGGAACCCTCAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCCGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Coding sequence (CDS)

ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGGCTGTGGAACCCTCAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCCGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Protein sequence

MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPVTVVYPSVSNAIPI

Homology

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BLAST of MELO3C020291.2 vs. NCBI nr
Match: XP_008457075.1 (PREDICTED: uncharacterized protein LOC103496843 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV 60
          MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV
Sbjct: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV 60

Query: 61 TVVYPSVSNAIPI 74
          TVVYPSVSNAIPI
Sbjct: 61 TVVYPSVSNAIPI 73

[Close]

BLAST of MELO3C020291.2 vs. NCBI nr
Match: XP_004150936.1 (PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus] >KGN57845.1 hypothetical protein Csa_3G346920 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 5.3e-29
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGV LGVP CI CGT RNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRH    RIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020291.2 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          M VG+GVP C+ CGT RNPCRC+VVGP+LGFLA  V AVVEWPVGALVY FRH    RIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020291.2 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          M VG+GVP C+ CGT RNPCRC+VVGP+LGFLA  V AVVEWPVGALVY FRH    RIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020291.2 vs. NCBI nr
Match: XP_004150937.1 (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hypothetical protein Csa_3G346910 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 7.9e-25
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGVG+GVP CI CGT  NPCRC+VVGP+LGFLA  V AVVEWPVGALV+ FRH    RIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020291.2 vs. TAIR10
Match: AT3G03341.1 (unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-22
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 7  VPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIMGHPVTV 66
          +P C+ CGT  NPCRC+VVGP+LG +A V   +VEWPVGALVY+F+H    RIMGHP T 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAIPI 74
          VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72

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BLAST of MELO3C020291.2 vs. TrEMBL
Match: tr|A0A1S3C5Z5|A0A1S3C5Z5_CUCME (uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV 60
          MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV
Sbjct: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHRIMGHPV 60

Query: 61 TVVYPSVSNAIPI 74
          TVVYPSVSNAIPI
Sbjct: 61 TVVYPSVSNAIPI 73

[Close]

BLAST of MELO3C020291.2 vs. TrEMBL
Match: tr|A0A0A0L786|A0A0A0L786_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-29
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGV LGVP CI CGT RNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRH    RIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020291.2 vs. TrEMBL
Match: tr|A0A0A0LA45|A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-25
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          MGVG+GVP CI CGT  NPCRC+VVGP+LGFLA  V AVVEWPVGALV+ FRH    RIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020291.2 vs. TrEMBL
Match: tr|A0A1S3C5C8|A0A1S3C5C8_CUCME (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 58/77 (75.32%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
          M VG+GVP CI CGT  NPCRC+VVGP+LGFLA  V AVVEWPVGALV+ FRH    RIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 74
           HP TVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020291.2 vs. TrEMBL
Match: tr|A0A2N9J3H0|A0A2N9J3H0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 4  GLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIMGHP 63
          G+G+P C+ CGT  NPCRC+VVGP+LGFLA  V A+VEWPVGALVY FRH    RIM HP
Sbjct: 4  GIGIPVCVQCGTPSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIMAHP 63

Query: 64 VTVVYPSVSNAIPI 74
           TVVYPSVSNAIPI
Sbjct: 64 ATVVYPSVSNAIPI 77

The following BLAST results are available for this feature:

BLAST of MELO3C020291.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457075.1	1.9e-34	100.00	PREDICTED: uncharacterized protein LOC103496843 [Cucumis melo]	[more]
XP_004150936.1	5.3e-29	88.31	PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus] >KGN57845.1 hy...	[more]
XP_023528466.1	1.2e-25	76.62	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
XP_022935253.1	1.6e-25	76.62	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]
XP_004150937.1	7.9e-25	75.32	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hy...	[more]

BLAST of MELO3C020291.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	3.4e-22	63.38	unknown protein	[more]

BLAST of MELO3C020291.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020291.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5Z5\|A0A1S3C5Z5_CUCME	1.2e-34	100.00	uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=...	[more]
tr\|A0A0A0L786\|A0A0A0L786_CUCSA	3.5e-29	88.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1	[more]
tr\|A0A0A0LA45\|A0A0A0LA45_CUCSA	5.2e-25	75.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
tr\|A0A1S3C5C8\|A0A1S3C5C8_CUCME	2.6e-24	75.32	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
tr\|A0A2N9J3H0\|A0A2N9J3H0_FAGSY	2.2e-23	72.97	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020291.2.1	MELO3C020291.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020291.2	Csa3G346910	Cucumber (Chinese Long) v2	cumedB239
MELO3C020291.2	CSPI03G21860	Wild cucumber (PI 183967)	cpimedB240
MELO3C020291.2	Cucsa.012680	Cucumber (Gy14) v1	cgymedB338
MELO3C020291.2	CmoCh14G008670	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020291.2	Cla013169	Watermelon (97103) v1	medwmB448
MELO3C020291.2	ClCG05G010950	Watermelon (Charleston Gray)	medwcgB417
MELO3C020291.2	Cla97C05G093240	Watermelon (97103) v2	medwmbB424
MELO3C020291.2	CsaV3_3G021640	Cucumber (Chinese Long) v3	cucmedB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020291.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C020291.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020291.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020291.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020291.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020291.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020291.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020291.2	Silver-seed gourd	carmedB0185
MELO3C020291.2	Silver-seed gourd	carmedB0771
MELO3C020291.2	Wax gourd	medwgoB531