CmoCh14G008670 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G008670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cold-regulated protein, putative
Location	Cmo_Chr14 : 4581688 .. 4581921 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTCGGAATCGGCGTTCCGGTCTGCGTCGAATGTGGAACCCACCGCAATCCGTGCAGGTGCAAGGTGGTGGGGCCGACCCTGGGGTTCTTGGCGTTCGCGGTGGCGGCGGTTGTAGAGTGGCCAGTGGGAGCTCTGGTTTATTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGTCACCGTCGTTTACCCGTCGGTGTCTAATGCGGTTCCTATTTGA

mRNA sequence

ATGGCTGTCGGAATCGGCGTTCCGGTCTGCGTCGAATGTGGAACCCACCGCAATCCGTGCAGGTGCAAGGTGGTGGGGCCGACCCTGGGGTTCTTGGCGTTCGCGGTGGCGGCGGTTGTAGAGTGGCCAGTGGGAGCTCTGGTTTATTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGTCACCGTCGTTTACCCGTCGGTGTCTAATGCGGTTCCTATTTGA

Coding sequence (CDS)

ATGGCTGTCGGAATCGGCGTTCCGGTCTGCGTCGAATGTGGAACCCACCGCAATCCGTGCAGGTGCAAGGTGGTGGGGCCGACCCTGGGGTTCTTGGCGTTCGCGGTGGCGGCGGTTGTAGAGTGGCCAGTGGGAGCTCTGGTTTATTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGTCACCGTCGTTTACCCGTCGGTGTCTAATGCGGTTCCTATTTGA

Homology

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BLAST of CmoCh14G008670 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-36
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
          AHP TVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

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BLAST of CmoCh14G008670 vs. TrEMBL
Match: A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-32
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          MA+GIG+P+CV+CGT  NPCRCKVVGPT+GFLAFA AAVVEWPVGALVYCFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
          AHP TVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of CmoCh14G008670 vs. TrEMBL
Match: D7TSS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-32
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          M  G+ +P+CV+CGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
          AHP  VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

[Close]

BLAST of CmoCh14G008670 vs. TrEMBL
Match: A0A0A0L786_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346920 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-32
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          M V +GVP+C+ECGTHRNPCRC++VGP+LGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
           HPVTVVYPSVSNA+PI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of CmoCh14G008670 vs. TrEMBL
Match: I3SB72_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-32
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 3  VGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIMAH 62
          VGIG+P+CV+CGTH NPCRCKVVGPT+GFLAFA AAVVEWPVGALVYCFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PVTVVYPSVSNAVPI 78
          P TVVYPSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

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BLAST of CmoCh14G008670 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-27
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 7  VPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIMAHPVTV 66
          +P+CV+CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALVY F+H KGRRIM HP T 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAVPI 78
          VYP VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

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BLAST of CmoCh14G008670 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          MAVG+GVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
          AHP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of CmoCh14G008670 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-36
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
          AHP TVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CmoCh14G008670 vs. NCBI nr
Match: gi|769814026|ref|XP_011622765.1| (PREDICTED: uncharacterized protein LOC105420519 [Amborella trichopoda])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1   MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
           +AVG+GVP+CV+CGTH NPCRCKVVGPTLGFLAFA AAVVEWPVGA+VY FRH  GRRIM
Sbjct: 37  IAVGVGVPICVQCGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGAVVYLFRHMTGRRIM 96

Query: 61  AHPVTVVYPSVSNAVPI 78
           AHPVTVVYPSVSNA+PI
Sbjct: 97  AHPVTVVYPSVSNAIPI 113

[Close]

BLAST of CmoCh14G008670 vs. NCBI nr
Match: gi|702374339|ref|XP_010062235.1| (PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis])

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-32
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          MA+GIG+P+CV+CGT  NPCRCKVVGPT+GFLAFA AAVVEWPVGALVYCFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
          AHP TVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of CmoCh14G008670 vs. NCBI nr
Match: gi|225453138|ref|XP_002273470.1| (PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera])

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-32
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
          M  G+ +P+CV+CGTH NPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPVTVVYPSVSNAVPI 78
          AHP  VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

The following BLAST results are available for this feature:

BLAST of CmoCh14G008670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G008670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA45_CUCSA	3.7e-36	92.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1	[more]
A0A059BUM2_EUCGR	1.9e-32	84.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1	[more]
D7TSS2_VITVI	4.3e-32	83.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=...	[more]
A0A0A0L786_CUCSA	4.3e-32	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346920 PE=4 SV=1	[more]
I3SB72_LOTJA	5.6e-32	84.00	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CmoCh14G008670 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	3.7e-27	70.42	unknown protein	[more]

BLAST of CmoCh14G008670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114483\|ref\|XP_008457074.1\|	3.2e-36	90.91	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
gi\|449466446\|ref\|XP_004150937.1\|	5.4e-36	92.21	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus]	[more]
gi\|769814026\|ref\|XP_011622765.1\|	1.2e-32	85.71	PREDICTED: uncharacterized protein LOC105420519 [Amborella trichopoda]	[more]
gi\|702374339\|ref\|XP_010062235.1\|	2.8e-32	84.42	PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis]	[more]
gi\|225453138\|ref\|XP_002273470.1\|	6.2e-32	83.12	PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G008670.1	CmoCh14G008670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77 score: 2.1
None	No IPR available	PANTHER	PTHR34673:SF1	SUBFAMILY NOT NAMED	coord: 1..77 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G008670	Cucsa.012680	Cucumber (Gy14) v1	cgycmoB0549
CmoCh14G008670	Cla013169	Watermelon (97103) v1	cmowmB232
CmoCh14G008670	Csa3G346910	Cucumber (Chinese Long) v2	cmocuB229
CmoCh14G008670	MELO3C020291	Melon (DHL92) v3.5.1	cmomeB231
CmoCh14G008670	ClCG05G010950	Watermelon (Charleston Gray)	cmowcgB220
CmoCh14G008670	CSPI03G21860	Wild cucumber (PI 183967)	cmocpiB232
CmoCh14G008670	MELO3C020291.2	Melon (DHL92) v3.6.1	cmomedB261
CmoCh14G008670	CsaV3_3G021640	Cucumber (Chinese Long) v3	cmocucB0272
CmoCh14G008670	Cla97C05G093240	Watermelon (97103) v2	cmowmbB244

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G008670	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G008670	Cucurbita maxima (Rimu)	cmacmoB462
CmoCh14G008670	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G008670	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G008670	Bottle gourd (USVL1VR-Ls)	cmolsiB237
CmoCh14G008670	Cucumber (Gy14) v2	cgybcmoB281
CmoCh14G008670	Silver-seed gourd	carcmoB0248
CmoCh14G008670	Silver-seed gourd	carcmoB1031
CmoCh14G008670	Wax gourd	cmowgoB0322
CmoCh14G008670	Cucurbita moschata (Rifu)	cmocmoB203