ClCG05G010950 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G010950
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Little protein 1
Location	CG_Chr05 : 12628835 .. 12629068 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

mRNA sequence

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

Coding sequence (CDS)

ATGGCTGTTGGAATCGGCGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGGTGCAAGGTGGTGGGACCGACCTTGGGGTTCTTGGCTTTCGCTGTGGCGGCGATGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCCACCGTCGTTTTCCCGTCGGTGTCTAACGCGGTTCCTATTTGA

Protein sequence

MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATVVFPSVSNAVPI

Homology

[Close]

BLAST of ClCG05G010950 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.6e-37
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. TrEMBL
Match: A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-33
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MA+GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of ClCG05G010950 vs. TrEMBL
Match: D7TSS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPA VV+PSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

[Close]

BLAST of ClCG05G010950 vs. TrEMBL
Match: I3SB72_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-32
Identity = 63/75 (84.00%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AA+VEWPVGALVYCFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVFPSVSNAVPI 78
          PATVV+PSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

[Close]

BLAST of ClCG05G010950 vs. TrEMBL
Match: A0A068U365_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040181001 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVG  +PIC++CGT  NPCRCKVVGPT+GFLAFA AA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGAPIPICVQCGTAGNPCRCKVVGPTIGFLAFAAAALVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVVFPSVSN++PI
Sbjct: 61 AHPATVVFPSVSNSIPI 77

[Close]

BLAST of ClCG05G010950 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-27
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALVY F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VFPSVSNAVPI 78
          V+P VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-37
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: gi|702374339|ref|XP_010062235.1| (PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis])

HSP 1 Score: 147.5 bits (371), Expect = 9.5e-33
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          MA+GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: gi|225453138|ref|XP_002273470.1| (PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPA VV+PSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

[Close]

BLAST of ClCG05G010950 vs. NCBI nr
Match: gi|388498896|gb|AFK37514.1| (unknown [Lotus japonicus])

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-32
Identity = 63/75 (84.00%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAMVEWPVGALVYCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AA+VEWPVGALVYCFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVFPSVSNAVPI 78
          PATVV+PSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

The following BLAST results are available for this feature:

BLAST of ClCG05G010950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA45_CUCSA	7.6e-37	94.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1	[more]
A0A059BUM2_EUCGR	6.6e-33	84.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1	[more]
D7TSS2_VITVI	1.1e-32	83.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=...	[more]
I3SB72_LOTJA	1.5e-32	84.00	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A068U365_COFCA	3.3e-32	83.12	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040181001 PE=4 SV=1	[more]

BLAST of ClCG05G010950 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	1.7e-27	70.42	unknown protein	[more]

BLAST of ClCG05G010950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114483\|ref\|XP_008457074.1\|	6.4e-37	93.51	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
gi\|449466446\|ref\|XP_004150937.1\|	1.1e-36	94.81	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus]	[more]
gi\|702374339\|ref\|XP_010062235.1\|	9.5e-33	84.42	PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis]	[more]
gi\|225453138\|ref\|XP_002273470.1\|	1.6e-32	83.12	PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera]	[more]
gi\|388498896\|gb\|AFK37514.1\|	2.1e-32	84.00	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G010950.1	ClCG05G010950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G010950	Csa3G346910	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G010950	MELO3C020291	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G010950	Cla013169	Watermelon (97103) v1	wcgwmB286
ClCG05G010950	Cla97C05G093240	Watermelon (97103) v2	wcgwmbB229
ClCG05G010950	CSPI03G21860	Wild cucumber (PI 183967)	cpiwcgB240
ClCG05G010950	Cucsa.012680	Cucumber (Gy14) v1	cgywcgB345
ClCG05G010950	CmoCh14G008670	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G010950	MELO3C020291.2	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G010950	CsaV3_3G021640	Cucumber (Chinese Long) v3	cucwcgB241

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G010950	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G010950	Silver-seed gourd	carwcgB0168
ClCG05G010950	Silver-seed gourd	carwcgB0739
ClCG05G010950	Wax gourd	wcgwgoB427
ClCG05G010950	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G010950	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G010950	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G010950	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G010950	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G010950	Bottle gourd (USVL1VR-Ls)	lsiwcgB332